Spaces:
Sleeping
Sleeping
Commit
·
86c44a0
1
Parent(s):
52c40ac
Update code/pdb_featureVector.py
Browse files
code/pdb_featureVector.py
CHANGED
|
@@ -265,21 +265,26 @@ def pdb(input_set, mode, impute):
|
|
| 265 |
# st.write('ERROR')
|
| 266 |
|
| 267 |
|
| 268 |
-
|
| 269 |
-
from huggingface_hub import
|
| 270 |
api = HfApi()
|
| 271 |
-
st.write('api',
|
|
|
|
| 272 |
api.upload_file(
|
| 273 |
path_or_fileobj=response.content,
|
| 274 |
path_in_repo="out_files/pdb/pdb_structures/",
|
| 275 |
repo_id="HUBioDataLab/ASCARIS",
|
| 276 |
repo_type="space")
|
| 277 |
st.write(f"PDB file {search}.pdb downloaded successfully.")
|
| 278 |
-
|
| 279 |
|
| 280 |
# Aug 23
|
| 281 |
content = response.content.decode("utf-8") # Decode the content if it's not already a string
|
|
|
|
|
|
|
| 282 |
parsed_records = list(SeqIO.parse(content, "fasta"))
|
|
|
|
|
|
|
| 283 |
for rec in parsed_records:
|
| 284 |
st.write(rec)
|
| 285 |
st.write(rec.id)
|
|
|
|
| 265 |
# st.write('ERROR')
|
| 266 |
|
| 267 |
|
| 268 |
+
"""
|
| 269 |
+
from huggingface_hub import Hf
|
| 270 |
api = HfApi()
|
| 271 |
+
st.write('api', API)
|
| 272 |
+
|
| 273 |
api.upload_file(
|
| 274 |
path_or_fileobj=response.content,
|
| 275 |
path_in_repo="out_files/pdb/pdb_structures/",
|
| 276 |
repo_id="HUBioDataLab/ASCARIS",
|
| 277 |
repo_type="space")
|
| 278 |
st.write(f"PDB file {search}.pdb downloaded successfully.")
|
| 279 |
+
"""
|
| 280 |
|
| 281 |
# Aug 23
|
| 282 |
content = response.content.decode("utf-8") # Decode the content if it's not already a string
|
| 283 |
+
st.write('Content')
|
| 284 |
+
st.write(content)
|
| 285 |
parsed_records = list(SeqIO.parse(content, "fasta"))
|
| 286 |
+
st.write('parsed_records')
|
| 287 |
+
st.write(parsed_records)
|
| 288 |
for rec in parsed_records:
|
| 289 |
st.write(rec)
|
| 290 |
st.write(rec.id)
|