Update code/pdb_featureVector.py

code/pdb_featureVector.py

@@ -409,6 +409,8 @@ def pdb(input_set, mode, impute):
         dfNM = dfNM.drop_duplicates(['uniprotID', 'wt', 'mut', 'pos', 'pdbSequence'], keep='first')
         dfNM.rename(columns={'isoformSequence': 'uniprotSequence'}, inplace=True)
         st.write('4')
+        st.write(dfM)
+        st.write(dfNM)
         dfM = dfM.astype(str)
         dfNM = dfNM.astype(str)
 
@@ -430,8 +432,12 @@ def pdb(input_set, mode, impute):
     
         print('Aligning sequences...\n')
         aligned_m = final_stage(dfM, annotation_list, Path(path_to_output_files / 'alignment_files'))
+        st.write('aligned_m')
+        st.write(aligned_m)
         aligned_nm = final_stage(dfNM, annotation_list, Path(path_to_output_files / 'alignment_files'))
+        st.write(aligned_nm)
 
+        st.write('WOTE')