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Update app.py
Browse files
app.py
CHANGED
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@@ -321,16 +321,55 @@ For more details, see our [paper on arXiv](https://arxiv.org/abs/2302.07868).
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info="Choose which protein target or general model to use for molecule generation"
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# Create container for generation mode inputs
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with gr.
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num_molecules = gr.Slider(
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minimum=10,
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maximum=250,
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@@ -339,27 +378,37 @@ For more details, see our [paper on arXiv](https://arxiv.org/abs/2302.07868).
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label="Number of Molecules to Generate",
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info="This space runs on a CPU, which may result in slower performance. Generating 200 molecules takes approximately 6 minutes. Therefore, We set a 250-molecule cap. On a GPU, the model can generate 10,000 molecules in the same amount of time. Please check our GitHub repo for running our models on GPU."
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# Create container for SMILES input mode
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with gr.
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smiles_input = gr.Textbox(
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label="Input SMILES",
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info="Enter up to 100 SMILES strings, one per line",
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lines=10,
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placeholder="CC(=O)OC1=CC=CC=C1C(=O)O\nCCO\nC1=CC=C(C=C1)C(=O)O\n...",
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)
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# Handle visibility toggling between the two input modes
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outputs=[generate_group, smiles_group]
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)
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@@ -368,6 +417,12 @@ For more details, see our [paper on arXiv](https://arxiv.org/abs/2302.07868).
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variant="primary",
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size="lg"
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with gr.Column(scale=2):
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basic_metrics_df = gr.Dataframe(
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@@ -393,8 +448,14 @@ For more details, see our [paper on arXiv](https://arxiv.org/abs/2302.07868).
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gr.Markdown("### Created by the HUBioDataLab | [GitHub](https://github.com/HUBioDataLab/DrugGEN) | [Paper](https://arxiv.org/abs/2302.07868)")
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submit_button.click(
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outputs=[
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image_output,
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file_download,
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info="Choose which protein target or general model to use for molecule generation"
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)
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# Add a separator between model selection and input mode
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gr.Markdown("---")
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gr.Markdown("## Input Settings")
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# Replace radio with switch using a better layout
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with gr.Row(equal_height=True):
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with gr.Column(scale=1, min_width=150):
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gr.Markdown("### Classic Generation", elem_id="generate-mode-label")
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with gr.Column(scale=1, min_width=150):
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input_mode_switch = gr.Switch(
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value=False,
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label="Custom SMILES Input",
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elem_id="input-mode-switch"
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)
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with gr.Column(scale=1, min_width=150):
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gr.Markdown("### Custom SMILES Input", elem_id="smiles-mode-label")
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# Add custom CSS for the switch styling
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gr.HTML("""
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<style>
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#input-mode-switch {
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margin: 0 auto;
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display: flex;
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justify-content: center;
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transform: scale(1.5);
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}
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#generate-mode-label, #smiles-mode-label {
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text-align: center;
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margin-top: 10px;
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}
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.input-box {
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border: 2px solid rgba(128, 128, 228, 0.3);
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border-radius: 10px;
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padding: 15px;
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margin-top: 15px;
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background-color: rgba(32, 36, 45, 0.7);
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box-shadow: 0 4px 6px rgba(0, 0, 0, 0.1);
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}
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.input-box:hover {
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border-color: rgba(128, 128, 228, 0.6);
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box-shadow: 0 6px 8px rgba(0, 0, 0, 0.15);
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}
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</style>
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""")
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# Create container for generation mode inputs
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with gr.Box(visible=True, elem_id="generate-box", elem_classes="input-box") as generate_group:
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num_molecules = gr.Slider(
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minimum=10,
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maximum=250,
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label="Number of Molecules to Generate",
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info="This space runs on a CPU, which may result in slower performance. Generating 200 molecules takes approximately 6 minutes. Therefore, We set a 250-molecule cap. On a GPU, the model can generate 10,000 molecules in the same amount of time. Please check our GitHub repo for running our models on GPU."
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# Seed input used in generate mode
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seed_num_generate = gr.Textbox(
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label="Random Seed (Optional)",
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value="",
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info="Set a specific seed for reproducible results, or leave empty for random generation"
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)
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# Create container for SMILES input mode
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with gr.Box(visible=False, elem_id="smiles-box", elem_classes="input-box") as smiles_group:
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smiles_input = gr.Textbox(
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label="Input SMILES",
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info="Enter up to 100 SMILES strings, one per line",
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lines=10,
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placeholder="CC(=O)OC1=CC=CC=C1C(=O)O\nCCO\nC1=CC=C(C=C1)C(=O)O\n...",
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)
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# Seed input used in SMILES mode
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seed_num_smiles = gr.Textbox(
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label="Random Seed (Optional)",
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value="",
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info="Set a specific seed for reproducible results, or leave empty for random generation"
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)
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# Handle visibility toggling between the two input modes
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def toggle_visibility(checkbox_value):
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return not checkbox_value, checkbox_value
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input_mode_switch.change(
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fn=toggle_visibility,
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inputs=[input_mode_switch],
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outputs=[generate_group, smiles_group]
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)
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variant="primary",
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size="lg"
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)
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# Helper function to determine which mode is active and which seed to use
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def get_inputs(checkbox_value, num_mols, seed_gen, seed_smiles, smiles):
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mode = "smiles" if checkbox_value else "generate"
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seed = seed_smiles if checkbox_value else seed_gen
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return [mode, num_mols, seed, smiles]
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with gr.Column(scale=2):
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basic_metrics_df = gr.Dataframe(
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gr.Markdown("### Created by the HUBioDataLab | [GitHub](https://github.com/HUBioDataLab/DrugGEN) | [Paper](https://arxiv.org/abs/2302.07868)")
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submit_button.click(
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fn=lambda model, checkbox, num_mols, seed_gen, seed_smiles, smiles: function(
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model,
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"smiles" if checkbox else "generate",
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num_mols,
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seed_smiles if checkbox else seed_gen,
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smiles
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),
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inputs=[model_name, input_mode_switch, num_molecules, seed_num_generate, seed_num_smiles, smiles_input],
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outputs=[
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image_output,
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file_download,
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