Spaces:
Running
Running
Update app.py
Browse files
app.py
CHANGED
|
@@ -8,9 +8,57 @@ class DrugGENConfig:
|
|
| 8 |
act='relu'
|
| 9 |
z_dim=16
|
| 10 |
max_atom=45
|
| 11 |
-
|
| 12 |
-
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 13 |
|
|
|
|
| 14 |
with st.spinner('Setting up the trainer class...'):
|
| 15 |
trainer = Trainer(DrugGENConfig())
|
| 16 |
|
|
|
|
| 8 |
act='relu'
|
| 9 |
z_dim=16
|
| 10 |
max_atom=45
|
| 11 |
+
lambda_gp=1
|
| 12 |
+
dim=128
|
| 13 |
+
depth=1
|
| 14 |
+
heads=8
|
| 15 |
+
dec_depth=1
|
| 16 |
+
dec_heads=8
|
| 17 |
+
dec_dim=128
|
| 18 |
+
mlp_ratio=3
|
| 19 |
+
warm_up_steps=0
|
| 20 |
+
dis_select='mlp'
|
| 21 |
+
init_type='normal'
|
| 22 |
+
batch_size=128
|
| 23 |
+
epoch=50
|
| 24 |
+
g_lr=0.00001
|
| 25 |
+
d_lr=0.00001
|
| 26 |
+
g2_lr=0.00001
|
| 27 |
+
d2_lr0.00001
|
| 28 |
+
dropout=0.
|
| 29 |
+
dec_dropout=0.
|
| 30 |
+
n_critic=1
|
| 31 |
+
beta1=0.9
|
| 32 |
+
beta2=0.999
|
| 33 |
+
resume_iters=None
|
| 34 |
+
clipping_value=2
|
| 35 |
+
features=False
|
| 36 |
+
test_iters=10_000
|
| 37 |
+
num_test_epoch=30_000
|
| 38 |
+
inference_sample_num=1000
|
| 39 |
+
num_workers=1
|
| 40 |
+
mode="inference"
|
| 41 |
+
inference_iterations=100
|
| 42 |
+
inf_batch_size=1
|
| 43 |
+
protein_data_dir='DrugGEN/data/akt'
|
| 44 |
+
drug_index='DrugGEN/data/drug_smiles.index'
|
| 45 |
+
drug_data_dir='DrugGEN/data/akt'
|
| 46 |
+
mol_data_dir='DrugGEN/data'
|
| 47 |
+
log_dir='DrugGEN/experiments/logs'
|
| 48 |
+
model_save_dir='DrugGEN/experiments/models'
|
| 49 |
+
inference_model=""
|
| 50 |
+
sample_dir='DrugGEN/experiments/samples'
|
| 51 |
+
result_dir="DrugGEN/experiments/tboard_output"
|
| 52 |
+
dataset_file="chembl45_train.pt"
|
| 53 |
+
drug_dataset_file="akt_train.pt"
|
| 54 |
+
raw_file='DrugGEN/data/chembl_train.smi'
|
| 55 |
+
drug_raw_file="DrugGEN/data/akt_train.smi"
|
| 56 |
+
inf_dataset_file="chembl45_test.pt"
|
| 57 |
+
inf_drug_dataset_file='akt_test.pt'
|
| 58 |
+
inf_raw_file='DrugGEN/data/chembl_test.smi'
|
| 59 |
+
inf_drug_raw_file="DrugGEN/data/akt_test.smi"
|
| 60 |
|
| 61 |
+
|
| 62 |
with st.spinner('Setting up the trainer class...'):
|
| 63 |
trainer = Trainer(DrugGENConfig())
|
| 64 |
|