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Update app.py
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app.py
CHANGED
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@@ -8,11 +8,10 @@ from transformers import (
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TrainingArguments,
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Trainer
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)
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from datasets import load_dataset,
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import numpy as np
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from huggingface_hub import HfApi
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import os
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import json
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from PIL import Image as PILImage
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# Configuration
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@@ -22,73 +21,136 @@ BASE_MODEL = "Falconsai/nsfw_image_detection"
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DEVICE = torch.device("cuda" if torch.cuda.is_available() else "cpu")
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def train_and_save_model():
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"""Train the model
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try:
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print("Loading Ultralytics/Brain-tumor dataset
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#
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dataset =
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if 'valid' not in dataset or 'test' not in dataset:
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return "❌ Error: Dataset must contain 'valid' and 'test' splits"
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print("
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#
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# Let's examine the structure
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if len(train_split) > 0:
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sample = train_split[0]
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print(f"Sample keys: {list(sample.keys())}")
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if '
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#
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return {
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'image': image,
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'label':
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}
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test_classification = test_split.map(yolo_to_classification)
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# Count
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tumor_count = sum(1 for item in train_classification if item['label'] == 1)
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no_tumor_count = sum(1 for item in train_classification if item['label'] == 0)
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print(f"
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#
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class_names = ["no_tumor", "tumor"]
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num_classes = 2
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print(f"Using
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# Define transforms
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transform = transforms.Compose([
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transforms.Resize((224, 224)),
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transforms.Grayscale(num_output_channels=3),
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@@ -111,21 +173,17 @@ def train_and_save_model():
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label = item['label']
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if self.transform:
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# Ensure image is PIL Image
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if not isinstance(image, PILImage.Image):
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image = PILImage.fromarray(image)
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image = self.transform(image)
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return image, label
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# Create
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train_dataset = MRIDataset(train_classification, transform=transform)
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test_dataset = MRIDataset(test_classification, transform=transform)
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print(f"Test samples: {len(test_dataset)}")
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# Load base model
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print("Loading base model...")
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model = AutoModelForImageClassification.from_pretrained(
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BASE_MODEL,
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# Training arguments
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training_args = TrainingArguments(
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output_dir="./results",
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num_train_epochs=
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per_device_train_batch_size=8,
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per_device_eval_batch_size=8,
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warmup_steps=
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weight_decay=0.01,
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logging_dir="./logs",
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logging_steps=10,
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@@ -155,7 +213,7 @@ def train_and_save_model():
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remove_unused_columns=False,
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)
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# Metrics
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def compute_metrics(eval_pred):
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predictions, labels = eval_pred
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predictions = np.argmax(predictions, axis=1)
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print("Starting training...")
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train_result = trainer.train()
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# Save model
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trainer.save_model(f"./{CUSTOM_MODEL_NAME}")
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processor.save_pretrained(f"./{CUSTOM_MODEL_NAME}")
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# Push to
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trainer.push_to_hub(commit_message="Train Brain Tumor classifier (YOLO to Classification)")
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#
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train_accuracy = train_result.metrics.get('train_accuracy', 'N/A')
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eval_accuracy = train_result.metrics.get('eval_accuracy', 'N/A')
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result_message = f"""
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✅ Training completed
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Model: {CUSTOM_MODEL_NAME}
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Dataset: {HF_DATASET}
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Classes: {', '.join(class_names)}
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Training Samples: {len(train_dataset)}
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Test Samples: {len(test_dataset)}
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Training Accuracy: {train_accuracy}
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Validation Accuracy: {eval_accuracy}
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Tumor/No-Tumor Ratio: {tumor_count}/{no_tumor_count}
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Model has been saved and pushed to Hugging Face Hub.
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"""
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return result_message
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except Exception as e:
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import traceback
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error_message = f"""
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❌ Error during training:
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Error Type: {type(e).__name__}
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Error Message: {str(e)}
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Detailed Traceback:
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{error_details}
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"""
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return error_message
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def classify_mri(image):
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"""Classify
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try:
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# Load your custom model
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model = AutoModelForImageClassification.from_pretrained(CUSTOM_MODEL_NAME)
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processor = AutoImageProcessor.from_pretrained(CUSTOM_MODEL_NAME)
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model.to(DEVICE)
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model.eval()
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# Preprocess image
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inputs = processor(image, return_tensors="pt").to(DEVICE)
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# Predict
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with torch.no_grad():
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outputs = model(**inputs)
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predictions = torch.nn.functional.softmax(outputs.logits, dim=-1)
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# Binary classification results
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class_names = ["No Tumor", "Tumor Detected"]
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results = {
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class_names[0]: float(predictions[0][0]), # No tumor probability
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class_names[1]: float(predictions[0][1]) # Tumor probability
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}
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# Add diagnostic information
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tumor_prob = float(predictions[0][1])
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if tumor_prob > 0.7:
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diagnosis = "🟢 Likely no tumor"
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elif tumor_prob > 0.3:
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diagnosis = "🟡 Uncertain - consult specialist"
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else:
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diagnosis = "🔴 Possible tumor detected"
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return
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"classification": results,
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"diagnosis": diagnosis,
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"tumor_probability": tumor_prob
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}
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except Exception as e:
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return f"⚠️
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# Gradio
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with gr.Blocks(
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gr.Markdown("#
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gr.Markdown(f"**Dataset**: {HF_DATASET} (YOLO Format) | **Base Model**: {BASE_MODEL}")
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with gr.Tab("🚀 Train Model"):
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gr.Markdown("### Train GoGenix_MRI_Brain Model")
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gr.Markdown(f"Using YOLO format dataset: `{HF_DATASET}`")
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gr.Markdown("**Note**: Converting object detection labels to binary classification")
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train_btn = gr.Button("Start Training", variant="primary", size="lg")
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output_text = gr.Textbox(
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label="Training Status",
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lines=20,
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placeholder="Click 'Start Training' to begin..."
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)
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train_btn.click(
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fn=train_and_save_model,
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outputs=output_text
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)
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with gr.Tab("
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gr.
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gr.
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image_input = gr.Image(
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type="pil",
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label="Brain MRI Scan",
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height=300
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)
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classify_btn = gr.Button("Analyze Scan", variant="secondary")
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with gr.Row():
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result_label = gr.Label(
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label="Classification Results",
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num_top_classes=2
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)
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diagnosis_text = gr.Textbox(
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label="Diagnostic Suggestion",
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interactive=False
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)
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def process_classification(image):
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result = classify_mri(image)
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if isinstance(result, dict) and 'classification' in result:
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return result['classification'], result.get('diagnosis', '')
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else:
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return {"Error": 1.0}, result
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classify_btn.click(
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fn=process_classification,
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inputs=image_input,
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outputs=[result_label, diagnosis_text]
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)
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with gr.Tab("
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gr.
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gr.
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**Original Structure**:
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- `images/` folder: Contains MRI scans
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- `labels/` folder: Contains bounding box annotations
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**Converted to**: Binary Classification
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- **No Tumor**: No bounding boxes in labels
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- **Tumor**: One or more bounding boxes present
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**Splits**: test, valid
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""")
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if __name__ == "__main__":
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demo.launch()
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TrainingArguments,
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Trainer
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)
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from datasets import load_dataset, DatasetDict
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import numpy as np
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from huggingface_hub import HfApi
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import os
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from PIL import Image as PILImage
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# Configuration
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DEVICE = torch.device("cuda" if torch.cuda.is_available() else "cpu")
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def train_and_save_model():
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"""Train the model with explicit dataset format handling"""
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try:
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print("Loading Ultralytics/Brain-tumor dataset with explicit format...")
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# Try multiple loading methods to handle format detection issues
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dataset = None
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# Method 1: Try loading with explicit imagefolder format for all splits
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try:
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dataset = load_dataset(HF_DATASET, "imagefolder")
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print("✅ Loaded with 'imagefolder' format")
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except Exception as e1:
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print(f"❌ Method 1 failed: {e1}")
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# Method 2: Try loading without specific format
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try:
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dataset = load_dataset(HF_DATASET)
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print("✅ Loaded without specific format")
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except Exception as e2:
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print(f"❌ Method 2 failed: {e2}")
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# Method 3: Try loading with data_files specification
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try:
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dataset = load_dataset(
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HF_DATASET,
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data_files={
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'train': ['**/train/**/*.jpg', '**/train/**/*.png', '**/train/**/*.jpeg'],
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'validation': ['**/valid/**/*.jpg', '**/valid/**/*.png', '**/valid/**/*.jpeg'],
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'test': ['**/test/**/*.jpg', '**/test/**/*.png', '**/test/**/*.jpeg']
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}
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)
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print("✅ Loaded with data_files specification")
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except Exception as e3:
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print(f"❌ Method 3 failed: {e3}")
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return f"All loading methods failed:\n1. {e1}\n2. {e2}\n3. {e3}"
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if dataset is None:
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return "❌ Could not load dataset with any method"
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print(f"Dataset splits available: {list(dataset.keys())}")
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# Check which splits we have and map them appropriately
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if 'train' in dataset and 'validation' in dataset:
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train_split = dataset['train']
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test_split = dataset['validation']
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print("Using 'train' and 'validation' splits")
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elif 'valid' in dataset and 'test' in dataset:
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train_split = dataset['valid']
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test_split = dataset['test']
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print("Using 'valid' and 'test' splits")
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elif 'train' in dataset and 'test' in dataset:
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train_split = dataset['train']
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test_split = dataset['test']
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print("Using 'train' and 'test' splits")
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else:
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available_splits = list(dataset.keys())
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return f"❌ Cannot determine train/test splits. Available splits: {available_splits}"
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print(f"Training samples: {len(train_split)}")
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print(f"Test samples: {len(test_split)}")
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# Analyze dataset structure
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if len(train_split) > 0:
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sample = train_split[0]
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print(f"Sample keys: {list(sample.keys())}")
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for key in sample.keys():
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print(f" {key}: {type(sample[key])}")
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# Determine if this is a classification or object detection dataset
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# For Ultralytics datasets, check if it has object detection format
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def detect_dataset_type(split):
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if len(split) == 0:
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return "empty"
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sample = split[0]
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if 'objects' in sample or 'bbox' in sample or 'labels' in sample and isinstance(sample.get('labels'), list):
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return "object_detection"
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elif 'label' in sample and isinstance(sample['label'], (int, float)):
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return "classification"
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elif 'image' in sample:
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return "image_only"
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else:
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return "unknown"
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train_type = detect_dataset_type(train_split)
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test_type = detect_dataset_type(test_split)
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print(f"Train dataset type: {train_type}")
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print(f"Test dataset type: {test_type}")
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# Convert to classification format
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def convert_to_classification(item):
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"""Convert various formats to classification format"""
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image = item.get('image')
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# Handle different label formats
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if 'label' in item and isinstance(item['label'], (int, float)):
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label = int(item['label'])
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elif 'objects' in item or 'bbox' in item:
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# Object detection format - convert to binary classification
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# If there are objects/bboxes, it's tumor (1), else no tumor (0)
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label = 1 if (item.get('objects') or item.get('bbox')) else 0
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elif 'labels' in item and isinstance(item['labels'], list) and len(item['labels']) > 0:
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label = 1 # Has labels = tumor
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else:
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label = 0 # No labels = no tumor
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return {
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'image': image,
|
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+
'label': label
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}
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print("Converting dataset to classification format...")
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train_classification = train_split.map(convert_to_classification)
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test_classification = test_split.map(convert_to_classification)
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+
# Count classes
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tumor_count = sum(1 for item in train_classification if item['label'] == 1)
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no_tumor_count = sum(1 for item in train_classification if item['label'] == 0)
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| 145 |
+
print(f"Tumor samples: {tumor_count}, No tumor samples: {no_tumor_count}")
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# Use binary classification
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class_names = ["no_tumor", "tumor"]
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num_classes = 2
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+
print(f"Using {num_classes} classes: {class_names}")
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+
# Define transforms
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transform = transforms.Compose([
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transforms.Resize((224, 224)),
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transforms.Grayscale(num_output_channels=3),
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label = item['label']
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if self.transform:
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if not isinstance(image, PILImage.Image):
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image = PILImage.fromarray(image)
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image = self.transform(image)
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return image, label
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| 182 |
+
# Create datasets
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train_dataset = MRIDataset(train_classification, transform=transform)
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test_dataset = MRIDataset(test_classification, transform=transform)
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| 185 |
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| 186 |
+
# Load model
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print("Loading base model...")
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| 188 |
model = AutoModelForImageClassification.from_pretrained(
|
| 189 |
BASE_MODEL,
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|
| 198 |
# Training arguments
|
| 199 |
training_args = TrainingArguments(
|
| 200 |
output_dir="./results",
|
| 201 |
+
num_train_epochs=5, # Reduced for testing
|
| 202 |
per_device_train_batch_size=8,
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| 203 |
per_device_eval_batch_size=8,
|
| 204 |
+
warmup_steps=100,
|
| 205 |
weight_decay=0.01,
|
| 206 |
logging_dir="./logs",
|
| 207 |
logging_steps=10,
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| 213 |
remove_unused_columns=False,
|
| 214 |
)
|
| 215 |
|
| 216 |
+
# Metrics
|
| 217 |
def compute_metrics(eval_pred):
|
| 218 |
predictions, labels = eval_pred
|
| 219 |
predictions = np.argmax(predictions, axis=1)
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| 233 |
print("Starting training...")
|
| 234 |
train_result = trainer.train()
|
| 235 |
|
| 236 |
+
# Save model
|
| 237 |
trainer.save_model(f"./{CUSTOM_MODEL_NAME}")
|
| 238 |
processor.save_pretrained(f"./{CUSTOM_MODEL_NAME}")
|
| 239 |
|
| 240 |
+
# Push to hub
|
| 241 |
+
trainer.push_to_hub(commit_message="Train Brain Tumor classifier")
|
|
|
|
| 242 |
|
| 243 |
+
# Results
|
| 244 |
train_accuracy = train_result.metrics.get('train_accuracy', 'N/A')
|
| 245 |
eval_accuracy = train_result.metrics.get('eval_accuracy', 'N/A')
|
| 246 |
|
| 247 |
result_message = f"""
|
| 248 |
+
✅ Training completed!
|
| 249 |
|
| 250 |
Model: {CUSTOM_MODEL_NAME}
|
| 251 |
+
Dataset: {HF_DATASET}
|
| 252 |
+
Classes: {class_names}
|
|
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|
| 253 |
Training Accuracy: {train_accuracy}
|
| 254 |
Validation Accuracy: {eval_accuracy}
|
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|
| 255 |
"""
|
| 256 |
|
| 257 |
return result_message
|
| 258 |
|
| 259 |
except Exception as e:
|
| 260 |
import traceback
|
| 261 |
+
return f"❌ Error: {str(e)}\n\n{traceback.format_exc()}"
|
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|
| 262 |
|
| 263 |
def classify_mri(image):
|
| 264 |
+
"""Classify MRI image"""
|
| 265 |
try:
|
|
|
|
| 266 |
model = AutoModelForImageClassification.from_pretrained(CUSTOM_MODEL_NAME)
|
| 267 |
processor = AutoImageProcessor.from_pretrained(CUSTOM_MODEL_NAME)
|
| 268 |
|
| 269 |
model.to(DEVICE)
|
| 270 |
model.eval()
|
| 271 |
|
|
|
|
| 272 |
inputs = processor(image, return_tensors="pt").to(DEVICE)
|
| 273 |
|
|
|
|
| 274 |
with torch.no_grad():
|
| 275 |
outputs = model(**inputs)
|
| 276 |
predictions = torch.nn.functional.softmax(outputs.logits, dim=-1)
|
| 277 |
|
|
|
|
| 278 |
class_names = ["No Tumor", "Tumor Detected"]
|
| 279 |
+
results = {class_names[i]: float(predictions[0][i]) for i in range(2)}
|
|
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|
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|
| 280 |
|
| 281 |
+
return results
|
|
|
|
|
|
|
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|
|
|
|
|
| 282 |
|
| 283 |
except Exception as e:
|
| 284 |
+
return f"⚠️ Error: {str(e)}"
|
| 285 |
|
| 286 |
+
# Simple Gradio interface
|
| 287 |
+
with gr.Blocks() as demo:
|
| 288 |
+
gr.Markdown("# Brain Tumor Classification")
|
|
|
|
|
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|
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|
|
| 289 |
|
| 290 |
+
with gr.Tab("Train"):
|
| 291 |
+
train_btn = gr.Button("Train Model")
|
| 292 |
+
output = gr.Textbox(lines=10)
|
| 293 |
+
train_btn.click(train_and_save_model, outputs=output)
|
|
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|
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|
|
|
|
| 294 |
|
| 295 |
+
with gr.Tab("Classify"):
|
| 296 |
+
image = gr.Image(type="pil")
|
| 297 |
+
classify_btn = gr.Button("Classify")
|
| 298 |
+
result = gr.Label()
|
| 299 |
+
classify_btn.click(classify_mri, inputs=image, outputs=result)
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
| 300 |
|
| 301 |
if __name__ == "__main__":
|
| 302 |
demo.launch()
|