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- # 🧬 Bioinformatics AI Agent - Heart Failure Risk Prediction
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-
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- A Gradio-based web interface for predicting heart failure risk from gene expression data.
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-
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- ## πŸš€ Quick Start
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-
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- ### Local Development
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-
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- 1. **Install dependencies:**
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- ```bash
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- pip install -r requirements.txt
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- ```
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-
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- 2. **Run the application:**
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- ```bash
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- python app.py
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- ```
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-
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- 3. **Open your browser:**
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- The app will automatically open at `http://localhost:7860`
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-
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- ## πŸ“ Input File Format
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-
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- Your input file should be structured as follows:
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-
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- | Sample_ID (or Unnamed: 0) | Gene_1 | Gene_2 | Gene_3 | ... |
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- |---------------------------|--------|--------|--------|-----|
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- | Sample_001 | 0.234 | 1.567 | 0.891 | ... |
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- | Sample_002 | 0.456 | 1.234 | 0.678 | ... |
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- | Sample_003 | 0.789 | 1.890 | 0.345 | ... |
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-
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- - **First column:** Sample identifiers (can be named or unnamed)
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- - **Remaining columns:** Numeric gene expression values
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-
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- Supported formats: `.csv`, `.xlsx`
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-
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- ## πŸ“Š Output
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-
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- The application returns a DataFrame with:
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- - **Sample_ID:** Original sample identifier
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- - **Age:** Predicted age (20-90 years)
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- - **Heart_Failure_Risk:** Risk score (0-1, where 1 indicates highest risk)
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-
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- ## πŸ”§ Customization
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-
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- ### Adding Your Model
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-
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- Replace the placeholder prediction logic in `app.py`:
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-
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- ```python
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- # Current placeholder (lines ~35-40):
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- Age = np.random.randint(20, 91, size=num_samples)
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- Heart_Failure_Risk = np.random.uniform(0, 1, size=num_samples)
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-
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- # Replace with your model:
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- from transformers import AutoModel, AutoTokenizer
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- # or
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- import joblib
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- model = joblib.load('your_model.pkl')
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-
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- # Then use:
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- predictions = model.predict(Model_Features)
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- ```
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-
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- ## 🌐 Deploy to Hugging Face Spaces
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-
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- 1. **Create a new Space:**
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- - Go to https://huggingface.co/spaces
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- - Click "Create new Space"
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- - Choose "Gradio" as the SDK
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- - Name your Space
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-
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- 2. **Upload files:**
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- - Upload `app.py`
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- - Upload `requirements.txt`
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- - Upload your model files (if any)
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-
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- 3. **Your Space will automatically build and deploy!**
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-
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- ## πŸ“¦ Project Structure
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-
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- ```
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- bioinformatics-space/
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- β”œβ”€β”€ app.py # Main Gradio application
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- β”œβ”€β”€ requirements.txt # Python dependencies
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- └── README.md # This file
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- ```
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-
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- ## πŸ› οΈ Technologies Used
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-
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- - **Gradio:** Web interface framework
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- - **Pandas:** Data manipulation
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- - **NumPy:** Numerical operations
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- - **OpenPyXL:** Excel file support
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-
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- ## πŸ“ Notes
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-
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- - Current predictions are **placeholder values** for demonstration
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- - Replace the prediction logic with your trained model
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- - Ensure your model accepts the same feature format as your input data
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- - Consider adding data preprocessing steps if needed
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-
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- ## 🀝 Contributing
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-
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- Feel free to customize this application for your specific bioinformatics use case!
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-
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- ## πŸ“„ License
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-
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- MIT License - Feel free to use and modify as needed.
 
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+ ---
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+ title: Heart Failure Predictor
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+ emoji: πŸ«€
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+ colorFrom: blue
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+ colorTo: green
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+ sdk: gradio
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+ sdk_version: 5.6.0
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+ app_file: app.py
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+ pinned: false
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+ license: mit
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+ ---