Spaces:
Sleeping
Sleeping
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README.md
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```
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2. **Run the application:**
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```bash
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python app.py
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```
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3. **Open your browser:**
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The app will automatically open at `http://localhost:7860`
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## π Input File Format
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Your input file should be structured as follows:
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| Sample_ID (or Unnamed: 0) | Gene_1 | Gene_2 | Gene_3 | ... |
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|---------------------------|--------|--------|--------|-----|
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| Sample_001 | 0.234 | 1.567 | 0.891 | ... |
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| Sample_002 | 0.456 | 1.234 | 0.678 | ... |
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| Sample_003 | 0.789 | 1.890 | 0.345 | ... |
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- **First column:** Sample identifiers (can be named or unnamed)
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- **Remaining columns:** Numeric gene expression values
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Supported formats: `.csv`, `.xlsx`
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## π Output
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The application returns a DataFrame with:
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- **Sample_ID:** Original sample identifier
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- **Age:** Predicted age (20-90 years)
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- **Heart_Failure_Risk:** Risk score (0-1, where 1 indicates highest risk)
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## π§ Customization
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### Adding Your Model
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Replace the placeholder prediction logic in `app.py`:
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```python
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# Current placeholder (lines ~35-40):
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Age = np.random.randint(20, 91, size=num_samples)
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Heart_Failure_Risk = np.random.uniform(0, 1, size=num_samples)
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# Replace with your model:
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from transformers import AutoModel, AutoTokenizer
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# or
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import joblib
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model = joblib.load('your_model.pkl')
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# Then use:
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predictions = model.predict(Model_Features)
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```
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## π Deploy to Hugging Face Spaces
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1. **Create a new Space:**
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- Go to https://huggingface.co/spaces
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- Click "Create new Space"
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- Choose "Gradio" as the SDK
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- Name your Space
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2. **Upload files:**
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- Upload `app.py`
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- Upload `requirements.txt`
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- Upload your model files (if any)
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3. **Your Space will automatically build and deploy!**
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## π¦ Project Structure
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```
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bioinformatics-space/
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βββ app.py # Main Gradio application
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βββ requirements.txt # Python dependencies
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βββ README.md # This file
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```
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## π οΈ Technologies Used
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- **Gradio:** Web interface framework
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- **Pandas:** Data manipulation
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- **NumPy:** Numerical operations
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- **OpenPyXL:** Excel file support
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## π Notes
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- Current predictions are **placeholder values** for demonstration
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- Replace the prediction logic with your trained model
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- Ensure your model accepts the same feature format as your input data
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- Consider adding data preprocessing steps if needed
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## π€ Contributing
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Feel free to customize this application for your specific bioinformatics use case!
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## π License
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MIT License - Feel free to use and modify as needed.
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---
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title: Heart Failure Predictor
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emoji: π«
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colorFrom: blue
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colorTo: green
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sdk: gradio
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sdk_version: 5.6.0
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app_file: app.py
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pinned: false
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license: mit
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---
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