Update app.py
Browse files
app.py
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# filename: app.py
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import os
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import cv2
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import numpy as np
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@@ -7,30 +8,31 @@ import torch
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from ultralytics import YOLO # pip install ultralytics
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import gradio as gr
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import matplotlib.pyplot as plt
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import spaces # ZeroGPU 装饰器
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# === GPU 可用性检查 &
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use_cuda = torch.cuda.is_available()
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print(f"CUDA available: {use_cuda}")
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if use_cuda:
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print(f"GPU Device: {torch.cuda.get_device_name(torch.cuda.current_device())}")
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#
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if use_cuda:
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# ONNX 推理时可通过 .model(PyTorch)迁移,或在推理调用时指定 device="cuda"
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try:
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model.model.to("cuda")
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except Exception:
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pass
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@spaces.GPU(duration=600) # 调用时分配 GPU
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def analyze_video(video_path, num_mice, window_size_sec=1, fps=30):
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"""
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返回:标注后的视频路径 &
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"""
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#
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cap = cv2.VideoCapture(video_path)
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fourcc = cv2.VideoWriter_fourcc(*"mp4v")
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out_path = "output.mp4"
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@@ -38,7 +40,7 @@ def analyze_video(video_path, num_mice, window_size_sec=1, fps=30):
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height = int(cap.get(cv2.CAP_PROP_FRAME_HEIGHT))
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out = cv2.VideoWriter(out_path, fourcc, fps, (width, height))
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#
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prev_centroids = [None] * num_mice
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prev_masks = [None] * num_mice
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struggle_records = [[] for _ in range(num_mice)]
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@@ -46,15 +48,16 @@ def analyze_video(video_path, num_mice, window_size_sec=1, fps=30):
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while True:
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ret, frame = cap.read()
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if not ret:
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#
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device = "cuda" if use_cuda else "cpu"
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results = model(frame, stream=True, device=device)
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res = next(results)
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masks = res.masks.data.cpu().numpy() # [N, H, W]
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#
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curr_centroids = []
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for m in masks:
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ys, xs = np.where(m > 0)
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@@ -76,20 +79,20 @@ def analyze_video(video_path, num_mice, window_size_sec=1, fps=30):
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assignments[i] = best_j
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unused_ids.remove(best_j)
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for i in range(len(curr_centroids)):
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if assignments[i]<0 and unused_ids:
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assignments[i] = unused_ids.pop()
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#
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for i, m in enumerate(masks):
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mid = assignments[i]
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if mid
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prev_m = prev_masks[mid]
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if prev_m is None:
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struggle_records[mid].append(None)
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else:
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diff = int(np.logical_xor(prev_m, m).sum())
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struggle_records[mid].append(diff)
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#
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mask_rgb = np.stack([m*255 if c==1 else 0 for c in range(3)], axis=-1).astype(np.uint8)
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frame = cv2.addWeighted(frame, 1, mask_rgb, 0.5, 0)
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if curr_centroids[i]:
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cap.release()
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out.release()
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#
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win = int(window_size_sec * fps)
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fig, ax = plt.subplots(figsize=(8,4))
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times = np.arange(0, frame_idx, win) / fps
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for i in range(len(times))]
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ax.plot(times, sums, label=f"Mouse {mid}")
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first = next((i for i,v in enumerate(rec) if v is not None), None)
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if first:
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ax.axvspan(0, first/fps, alpha=0.3, color='gray')
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ax.set_xlabel("Time (s)")
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ax.set_ylabel("Struggle Intensity")
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return out_path, fig
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#
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with gr.Blocks(title="Mice Struggle Analysis") as demo:
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gr.Markdown("上传视频,输入鼠标数量,点击 Run。")
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with gr.Row():
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@@ -136,6 +139,5 @@ with gr.Blocks(title="Mice Struggle Analysis") as demo:
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outputs=[output_video, output_plot])
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if __name__ == "__main__":
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api_config={"timeout":600}) # 保持 600s 超时 :contentReference[oaicite:5]{index=5}
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# filename: app.py
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import spaces # 必须最先 import
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import os
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import cv2
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import numpy as np
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from ultralytics import YOLO # pip install ultralytics
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import gradio as gr
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import matplotlib.pyplot as plt
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# === 1. GPU 可用性检查 & 日志 ===
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use_cuda = torch.cuda.is_available()
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print(f"CUDA available: {use_cuda}")
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if use_cuda:
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print(f"GPU Device: {torch.cuda.get_device_name(torch.cuda.current_device())}")
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# === 2. 加载模型并显式指定 task ===
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# 避免无法猜测任务类型的警告,明确使用分割 (segment) 模式
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model = YOLO("fst-v1.2-n.onnx", task="segment") # ONNX 模型需上传至空间
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# 若 CUDA 可用,迁移模型至 GPU
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if use_cuda:
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try:
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model.model.to("cuda")
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except Exception:
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pass
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@spaces.GPU(duration=600) # 调用时分配 GPU,超时 600s :contentReference[oaicite:3]{index=3}
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def analyze_video(video_path, num_mice, window_size_sec=1, fps=30):
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"""
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核心分析:分割 → 跟踪 → 计算“挣扎强度”
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返回:标注后的视频路径 & 绘制好的挣扎曲线 (matplotlib Figure)
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"""
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# 视频读写设置
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cap = cv2.VideoCapture(video_path)
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fourcc = cv2.VideoWriter_fourcc(*"mp4v")
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out_path = "output.mp4"
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height = int(cap.get(cv2.CAP_PROP_FRAME_HEIGHT))
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out = cv2.VideoWriter(out_path, fourcc, fps, (width, height))
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# 跟踪初始化
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prev_centroids = [None] * num_mice
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prev_masks = [None] * num_mice
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struggle_records = [[] for _ in range(num_mice)]
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while True:
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ret, frame = cap.read()
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if not ret:
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break
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# 分割推理(stream=True 加速),指定 device
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device = "cuda" if use_cuda else "cpu"
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results = model(frame, stream=True, device=device)
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res = next(results)
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masks = res.masks.data.cpu().numpy() # [N, H, W]
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# 计算质心 & 分配 ID(nearest-centroid)
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curr_centroids = []
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for m in masks:
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ys, xs = np.where(m > 0)
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assignments[i] = best_j
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unused_ids.remove(best_j)
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for i in range(len(curr_centroids)):
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if assignments[i] < 0 and unused_ids:
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assignments[i] = unused_ids.pop()
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# 计算挣扎强度 & 可视化
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for i, m in enumerate(masks):
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mid = assignments[i]
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if mid < 0: continue
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prev_m = prev_masks[mid]
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if prev_m is None:
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struggle_records[mid].append(None)
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else:
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diff = int(np.logical_xor(prev_m, m).sum())
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struggle_records[mid].append(diff)
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# 叠加掩膜 & ID
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mask_rgb = np.stack([m*255 if c==1 else 0 for c in range(3)], axis=-1).astype(np.uint8)
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frame = cv2.addWeighted(frame, 1, mask_rgb, 0.5, 0)
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if curr_centroids[i]:
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cap.release()
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out.release()
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# 汇总 & 绘图
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win = int(window_size_sec * fps)
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fig, ax = plt.subplots(figsize=(8,4))
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times = np.arange(0, frame_idx, win) / fps
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for i in range(len(times))]
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ax.plot(times, sums, label=f"Mouse {mid}")
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first = next((i for i,v in enumerate(rec) if v is not None), None)
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if first is not None:
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ax.axvspan(0, first/fps, alpha=0.3, color='gray')
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ax.set_xlabel("Time (s)")
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ax.set_ylabel("Struggle Intensity")
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return out_path, fig
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# Gradio 前端
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with gr.Blocks(title="Mice Struggle Analysis") as demo:
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gr.Markdown("上传视频,输入鼠标数量,点击 Run。")
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with gr.Row():
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outputs=[output_video, output_plot])
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if __name__ == "__main__":
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# 去除不支持的 api_config 参数
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demo.launch(server_name="0.0.0.0", server_port=7860, share=False) # ⚠️ 删除 api_config :contentReference[oaicite:4]{index=4}
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