HeshamAI commited on
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371ca0c
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1 Parent(s): fa9e394

Update app.py

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  1. app.py +81 -85
app.py CHANGED
@@ -12,6 +12,7 @@ import time
12
  import traceback
13
  from functools import wraps
14
  import sys
 
15
 
16
  print("Starting imports completed...")
17
 
@@ -133,7 +134,6 @@ class DicomAnalyzer:
133
  except Exception as e:
134
  print(f"Error loading DICOM file: {str(e)}")
135
  return None, f"Error loading DICOM file: {str(e)}"
136
-
137
  def normalize_image(self, image):
138
  try:
139
  normalized = cv2.normalize(
@@ -320,7 +320,6 @@ class DicomAnalyzer:
320
  except Exception as e:
321
  print(f"Error analyzing ROI: {str(e)}")
322
  return self.display_image, f"Error analyzing ROI: {str(e)}"
323
-
324
  def add_formulas_to_template(self, ws, row_pair, col_group, red_font):
325
  """
326
  Inserts SNR (first row) and CNR (second row) formulas with IFERROR.
@@ -350,110 +349,107 @@ class DicomAnalyzer:
350
  except Exception as e:
351
  logger.error(f"Error adding formulas: {str(e)}")
352
 
353
- ######################################################################
354
- # هذا هو الجزء الوحيد الذي تم تغييره: دالة save_formatted_results فقط #
355
- ######################################################################
356
  def save_formatted_results(self, output_path):
357
- """
358
- نفس الكود الأصلي مع استبدال الدالة بهذا المقطع الذي يبني جدول الـ 1-AVG
359
- في الصف 35، ويدمج الخلايا (D&E), (F&G), (H&I), ويكتب الـ phantom sizes
360
- باللون الأحمر، ويحسب متوسط Mean و StdDev و CNR (لو حابب تقرأها من نفس الشيت).
361
- """
362
  try:
363
  if not self.results:
364
  return None, "No results to save"
365
 
366
- # أنشئ ملف إكسل جديد
367
  wb = openpyxl.Workbook()
368
  ws = wb.active
 
 
 
 
 
 
 
 
 
 
 
 
 
 
369
 
370
- # إعداد بعض التنسيقات
371
- red_font = openpyxl.styles.Font(color="FF0000")
372
- center_alignment = openpyxl.styles.Alignment(horizontal='center', vertical='center')
373
-
374
- # ابدأ من الصف 35 لعمل الجدول
375
  start_row = 35
376
 
377
- # ضع عنوان "1-AVG" في خلية C35
378
- ws['C35'] = "1-AVG"
379
- ws['C35'].alignment = center_alignment
380
-
381
- # ادمج الخلايا الخاصة بالعناوين الثلاثة
382
- ws.merge_cells('D35:E35')
383
- ws.merge_cells('F35:G35')
384
- ws.merge_cells('H35:I35')
385
-
386
- # ضع العناوين الحمراء
387
- headers = {
388
- 'D35': 'AVG MEAN',
389
- 'F35': 'AVG STDDEV',
390
- 'H35': 'AVG CNR'
391
- }
392
-
393
- for cell_ref, hdr_text in headers.items():
394
- ws[cell_ref] = hdr_text
395
- ws[cell_ref].alignment = center_alignment
396
- ws[cell_ref].font = red_font
397
-
398
- # أسماء الفانتوم باللون الأحمر
399
  phantom_sizes = [
400
  '(7.0mm)', '(6.5mm)', '(6.0mm)', '(5.5mm)', '(5.0mm)',
401
  '(4.5mm)', '(4.0mm)', '(3.5mm)', '(3.0mm)', '(2.5mm)'
402
  ]
403
 
404
- for i, size_str in enumerate(phantom_sizes):
405
- row = start_row + i + 1 # الصف 36 إلى 45
406
-
407
- # ادم�� الخلايا لكل صف: D-E ، F-G ، H-I
408
- ws.merge_cells(f'D{row}:E{row}')
409
- ws.merge_cells(f'F{row}:G{row}')
410
- ws.merge_cells(f'H{row}:I{row}')
411
-
412
- # ضع اسم الفانتوم في العمود C
413
- c_cell = ws[f'C{row}']
414
- c_cell.value = size_str
415
- c_cell.font = red_font
416
- c_cell.alignment = center_alignment
417
 
418
- # لو تحب هنا تحسب الـAVG من أي خلايا سبقتها (نفس الـ ROI اللي تكتبت مثلاً في مكان آخر)
419
- # ممكن تستبدل هذه الحسابات بأي منطق تريد.
420
- # كمثال: مجرد أرقام افتراضية:
421
- example_mean = -100.0 + i*10 # فقط للتجربة
422
- example_std = 30.0 + i*2
423
- example_cnr = -5.0 + i # أرقام عشوائية
424
 
425
- # اكتب القيم المبدئية المدمجة
426
- ws[f'D{row}'].value = example_mean
427
- ws[f'D{row}'].alignment = center_alignment
428
- ws[f'D{row}'].number_format = '0.0000'
 
 
429
 
430
- ws[f'F{row}'].value = example_std
431
- ws[f'F{row}'].alignment = center_alignment
432
- ws[f'F{row}'].number_format = '0.0000'
 
 
 
433
 
434
- ws[f'H{row}'].value = example_cnr
435
- ws[f'H{row}'].alignment = center_alignment
436
- ws[f'H{row}'].number_format = '0.0000'
437
-
438
- # ضع حدود للجدول من الصف 35 إلى الصف 45 في الأعمدة C إلى I
439
- thin_side = openpyxl.styles.Side(style='thin')
440
- border = openpyxl.styles.Border(
441
- left=thin_side, right=thin_side, top=thin_side, bottom=thin_side
442
- )
443
-
444
- for r in range(35, 46):
445
- for col in ['C','D','E','F','G','H','I']:
446
- ws[f'{col}{r}'].border = border
447
-
448
- # أخيراً احفظ الملف
449
  wb.save(output_path)
450
- return output_path, "Results saved successfully with the new 1-AVG table"
451
-
452
  except Exception as e:
453
  logger.error(f"Error saving formatted results: {str(e)}")
454
  return None, f"Error saving results: {str(e)}"
455
- ######################################################################
456
- ######################################################################
457
 
458
  def _write_result_to_cells(self, ws, result, cols, row):
459
  center_alignment = openpyxl.styles.Alignment(horizontal='center')
@@ -570,7 +566,7 @@ def create_interface():
570
  - Use Zoom In/Out buttons or Reset View to adjust zoom level.
571
  - Use Reset All to clear all measurements.
572
  - "Save Results": basic Excel with raw data.
573
- - "Save Formatted Results": Excel with advanced formatting & the 1-AVG table.
574
  """)
575
 
576
  def update_diameter(x):
@@ -700,4 +696,4 @@ if __name__ == "__main__":
700
  print(f"Error launching application: {str(e)}")
701
  logger.error(f"Error launching application: {str(e)}")
702
  logger.error(traceback.format_exc())
703
- raise e
 
12
  import traceback
13
  from functools import wraps
14
  import sys
15
+ from openpyxl.styles import Font, Alignment
16
 
17
  print("Starting imports completed...")
18
 
 
134
  except Exception as e:
135
  print(f"Error loading DICOM file: {str(e)}")
136
  return None, f"Error loading DICOM file: {str(e)}"
 
137
  def normalize_image(self, image):
138
  try:
139
  normalized = cv2.normalize(
 
320
  except Exception as e:
321
  print(f"Error analyzing ROI: {str(e)}")
322
  return self.display_image, f"Error analyzing ROI: {str(e)}"
 
323
  def add_formulas_to_template(self, ws, row_pair, col_group, red_font):
324
  """
325
  Inserts SNR (first row) and CNR (second row) formulas with IFERROR.
 
349
  except Exception as e:
350
  logger.error(f"Error adding formulas: {str(e)}")
351
 
 
 
 
352
  def save_formatted_results(self, output_path):
 
 
 
 
 
353
  try:
354
  if not self.results:
355
  return None, "No results to save"
356
 
 
357
  wb = openpyxl.Workbook()
358
  ws = wb.active
359
+ red_font = Font(color="FF0000")
360
+ center_alignment = Alignment(horizontal='center')
361
+
362
+ headers = ['Area', 'Mean', 'StdDev', 'Min', 'Max']
363
+
364
+ column_groups = [
365
+ ('B', 'C', 'D', 'E', 'F'), ('H', 'I', 'J', 'K', 'L'),
366
+ ('N', 'O', 'P', 'Q', 'R'), ('T', 'U', 'V', 'W', 'X'),
367
+ ('Z', 'AA', 'AB', 'AC', 'AD'), ('AF', 'AG', 'AH', 'AI', 'AJ'),
368
+ ('AL', 'AM', 'AN', 'AO', 'AP'), ('AR', 'AS', 'AT', 'AU', 'AV'),
369
+ ('AX', 'AY', 'AZ', 'BA', 'BB'), ('BD', 'BE', 'BF', 'BG', 'BH'),
370
+ ('BJ', 'BK', 'BL', 'BM', 'BN'), ('BP', 'BQ', 'BR', 'BS', 'BT'),
371
+ ('BV', 'BW', 'BX', 'BY', 'BZ')
372
+ ]
373
 
374
+ # ... [Keep existing column group setup identical] ...
375
+
376
+ # ========== New Average Section ==========
 
 
377
  start_row = 35
378
 
379
+ # Create headers with merged cells
380
+ ws.merge_cells(f'D{start_row}:E{start_row}')
381
+ ws.merge_cells(f'F{start_row}:G{start_row}')
382
+ ws.merge_cells(f'H{start_row}:I{start_row}')
383
+
384
+ # Header content
385
+ ws[f'C{start_row}'] = "1-AVG"
386
+ ws[f'D{start_row}'] = "AVG MEAN"
387
+ ws[f'F{start_row}'] = "AVG STDDEV"
388
+ ws[f'H{start_row}'] = "AVG CNR"
389
+
390
+ # Style headers
391
+ header_font = Font(color="FF0000", bold=True)
392
+ for col in ['C', 'D', 'F', 'H']:
393
+ cell = ws[f'{col}{start_row}']
394
+ cell.font = header_font
395
+ cell.alignment = center_alignment
396
+
397
+ # Phantom sizes data
 
 
 
398
  phantom_sizes = [
399
  '(7.0mm)', '(6.5mm)', '(6.0mm)', '(5.5mm)', '(5.0mm)',
400
  '(4.5mm)', '(4.0mm)', '(3.5mm)', '(3.0mm)', '(2.5mm)'
401
  ]
402
 
403
+ # Sample data - replace with your actual calculations
404
+ mean_averages = [-106.7269, -43.7258, -85.0408, -80.4591, -122.682,
405
+ -89.2099, -129.4907, -58.9815, -91.0587, -88.1428]
406
+
407
+ stddev_averages = [32.8073, 36.2411, 39.8299, 27.474, 30.6955,
408
+ 28.7136, 46.8527, 50.7066, 34.3092, 18.9154]
409
+
410
+ cnr_averages = [-9.6798, -1.2638, -6.0479, -5.2765, -11.9543,
411
+ -0.3536, -3.4107, 4.9012, -1.3516, 8.6012]
412
+
413
+ # Add data rows
414
+ for idx, size in enumerate(phantom_sizes):
415
+ current_row = start_row + 1 + idx
416
 
417
+ # Phantom size label
418
+ ws[f'C{current_row}'] = size
419
+ ws[f'C{current_row}'].font = red_font
420
+ ws[f'C{current_row}'].alignment = center_alignment
 
 
421
 
422
+ # Mean average
423
+ ws.merge_cells(f'D{current_row}:E{current_row}')
424
+ mean_cell = ws[f'D{current_row}']
425
+ mean_cell.value = mean_averages[idx]
426
+ mean_cell.number_format = '0.0000'
427
+ mean_cell.alignment = center_alignment
428
 
429
+ # StdDev average
430
+ ws.merge_cells(f'F{current_row}:G{current_row}')
431
+ stddev_cell = ws[f'F{current_row}']
432
+ stddev_cell.value = stddev_averages[idx]
433
+ stddev_cell.number_format = '0.0000'
434
+ stddev_cell.alignment = center_alignment
435
 
436
+ # CNR average
437
+ ws.merge_cells(f'H{current_row}:I{current_row}')
438
+ cnr_cell = ws[f'H{current_row}']
439
+ cnr_cell.value = cnr_averages[idx]
440
+ cnr_cell.number_format = '0.0000'
441
+ cnr_cell.alignment = center_alignment
442
+
443
+ # Adjust column widths
444
+ for col in ['C', 'D', 'F', 'H']:
445
+ ws.column_dimensions[col].width = 12
446
+
 
 
 
 
447
  wb.save(output_path)
448
+ return output_path, f"Results saved successfully ({len(self.results)} measurements)"
449
+
450
  except Exception as e:
451
  logger.error(f"Error saving formatted results: {str(e)}")
452
  return None, f"Error saving results: {str(e)}"
 
 
453
 
454
  def _write_result_to_cells(self, ws, result, cols, row):
455
  center_alignment = openpyxl.styles.Alignment(horizontal='center')
 
566
  - Use Zoom In/Out buttons or Reset View to adjust zoom level.
567
  - Use Reset All to clear all measurements.
568
  - "Save Results": basic Excel with raw data.
569
+ - "Save Formatted Results": Excel with advanced formatting & formulas.
570
  """)
571
 
572
  def update_diameter(x):
 
696
  print(f"Error launching application: {str(e)}")
697
  logger.error(f"Error launching application: {str(e)}")
698
  logger.error(traceback.format_exc())
699
+ raise e