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Update app.py
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app.py
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@@ -1,13 +1,12 @@
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import gradio as gr
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import cv2
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import numpy as np
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import pandas as pd
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import pydicom
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class DicomAnalyzer:
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def __init__(self):
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self.circle_diameter = 9
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self.results = []
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self.current_image = None
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self.image_display = None
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self.dicom_data = None
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@@ -17,10 +16,11 @@ class DicomAnalyzer:
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if file is None:
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return None, "No file selected"
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dicom_data = pydicom.dcmread(file.name)
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image = dicom_data.pixel_array.astype(np.float32)
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# Apply rescale slope and intercept
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rescale_slope = getattr(dicom_data, 'RescaleSlope', 1)
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rescale_intercept = getattr(dicom_data, 'RescaleIntercept', 0)
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image = (image * rescale_slope) + rescale_intercept
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@@ -29,42 +29,54 @@ class DicomAnalyzer:
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image_display = cv2.normalize(image, None, 0, 255, cv2.NORM_MINMAX).astype(np.uint8)
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image_display = cv2.cvtColor(image_display, cv2.COLOR_GRAY2BGR)
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#
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self.current_image = image
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self.image_display = image_display
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self.dicom_data = dicom_data
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return image_display, "File loaded successfully"
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except Exception as e:
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return None, f"Error loading file: {str(e)}"
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def update_circle_diameter(self, value):
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self.circle_diameter = value
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return f"Circle diameter updated to {value}"
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def create_interface():
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analyzer = DicomAnalyzer()
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with gr.Blocks() as interface:
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gr.Markdown("# CT DICOM Image Analyzer")
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with gr.Row():
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file_input = gr.File(label="Upload DICOM File")
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image_output = gr.Image(label="DICOM Image", interactive=False, type="numpy")
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status_output = gr.Textbox(label="Status", interactive=False)
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with gr.Row():
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circle_diameter_slider = gr.Slider(
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minimum=1, maximum=20, value=9, step=1, label="Circle Diameter"
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)
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circle_status = gr.Textbox(label="Circle Diameter Status", interactive=False)
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# Link
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file_input.change(
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return interface
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if __name__ == "__main__":
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interface = create_interface()
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interface.launch()
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import gradio as gr
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import cv2
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import numpy as np
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import pydicom
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class DicomAnalyzer:
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def __init__(self):
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self.circle_diameter = 9
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self.current_image = None
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self.image_display = None
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self.dicom_data = None
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if file is None:
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return None, "No file selected"
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# Load DICOM file
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dicom_data = pydicom.dcmread(file.name)
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image = dicom_data.pixel_array.astype(np.float32)
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# Apply rescale slope and intercept if available
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rescale_slope = getattr(dicom_data, 'RescaleSlope', 1)
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rescale_intercept = getattr(dicom_data, 'RescaleIntercept', 0)
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image = (image * rescale_slope) + rescale_intercept
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image_display = cv2.normalize(image, None, 0, 255, cv2.NORM_MINMAX).astype(np.uint8)
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image_display = cv2.cvtColor(image_display, cv2.COLOR_GRAY2BGR)
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# Store state
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self.current_image = image
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self.image_display = image_display
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self.dicom_data = dicom_data
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return image_display, "File loaded successfully"
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except Exception as e:
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return None, f"Error loading DICOM file: {str(e)}"
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def update_circle_diameter(self, value):
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self.circle_diameter = value
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return f"Circle diameter updated to {value}"
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def create_interface():
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analyzer = DicomAnalyzer()
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with gr.Blocks() as interface:
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gr.Markdown("# CT DICOM Image Analyzer")
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# File Upload and Image Display
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with gr.Row():
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file_input = gr.File(label="Upload DICOM File")
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image_output = gr.Image(label="DICOM Image", interactive=False, type="numpy")
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status_output = gr.Textbox(label="Status", interactive=False)
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# Circle Diameter Slider
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with gr.Row():
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circle_diameter_slider = gr.Slider(
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minimum=1, maximum=20, value=9, step=1, label="Circle Diameter"
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)
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circle_status = gr.Textbox(label="Circle Diameter Status", interactive=False)
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# Link Events
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file_input.change(
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fn=analyzer.load_dicom,
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inputs=file_input,
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outputs=[image_output, status_output],
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)
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circle_diameter_slider.change(
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fn=analyzer.update_circle_diameter,
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inputs=circle_diameter_slider,
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outputs=circle_status,
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)
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return interface
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if __name__ == "__main__":
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interface = create_interface()
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interface.launch()
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