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<!DOCTYPE html>
<html lang="en">
<head>
<meta charset="UTF-8"/>
<meta name="viewport" content="width=device-width, initial-scale=1.0"/>
<title>PhdScout β€” Documentation</title>
<style>
  :root {
    --bg: #000000;
    --surface: #1c1c1e;
    --sidebar-bg: rgba(28,28,30,0.88);
    --border: rgba(255,255,255,0.10);
    --text: #f5f5f7;
    --text-secondary: #98989d;
    --accent: #2997ff;
    --accent-hover: #47aaff;
    --code-bg: #111113;
    --code-text: #e8e8ed;
    --tag-bg: #0a2540;
    --tag-text: #4da6ff;
    --radius: 12px;
    --radius-sm: 8px;
    --shadow: 0 2px 20px rgba(0,0,0,0.40);
    --shadow-lg: 0 8px 40px rgba(0,0,0,0.60);
    --sidebar-w: 240px;
    --font: -apple-system, BlinkMacSystemFont, "SF Pro Text", "Helvetica Neue", Arial, sans-serif;
    --font-mono: "SF Mono", "Fira Code", "Cascadia Code", Menlo, monospace;
  }

  * { box-sizing: border-box; margin: 0; padding: 0; }

  body {
    font-family: var(--font);
    background: var(--bg);
    color: var(--text);
    line-height: 1.6;
    font-size: 15px;
    -webkit-font-smoothing: antialiased;
  }

  /* ── Sidebar ────────────────────────────────────────── */
  .sidebar {
    position: fixed;
    top: 0; left: 0; bottom: 0;
    width: var(--sidebar-w);
    background: var(--sidebar-bg);
    backdrop-filter: blur(20px) saturate(180%);
    -webkit-backdrop-filter: blur(20px) saturate(180%);
    border-right: 1px solid var(--border);
    overflow-y: auto;
    z-index: 100;
    padding: 24px 0 40px;
    display: flex;
    flex-direction: column;
    gap: 0;
  }

  .sidebar-logo {
    padding: 0 20px 20px;
    border-bottom: 1px solid var(--border);
    margin-bottom: 12px;
  }

  .sidebar-logo h1 {
    font-size: 18px;
    font-weight: 700;
    letter-spacing: -0.5px;
    color: var(--text);
  }

  .sidebar-logo span {
    font-size: 12px;
    color: var(--text-secondary);
    display: block;
    margin-top: 2px;
  }

  .nav-section {
    padding: 6px 12px 2px;
    font-size: 11px;
    font-weight: 600;
    letter-spacing: 0.06em;
    text-transform: uppercase;
    color: var(--text-secondary);
    margin-top: 10px;
  }

  .nav-link {
    display: flex;
    align-items: center;
    gap: 8px;
    padding: 7px 20px;
    font-size: 14px;
    color: var(--text-secondary);
    text-decoration: none;
    border-radius: 0;
    transition: color 0.15s, background 0.15s;
    cursor: pointer;
    border: none;
    background: none;
    width: 100%;
    text-align: left;
  }

  .nav-link:hover { background: rgba(0,0,0,0.04); color: var(--text); }
  .nav-link.active { color: var(--accent); font-weight: 500; background: rgba(0,113,227,0.07); }
  .nav-link .icon { font-size: 15px; width: 18px; text-align: center; }

  /* ── Main content ────────────────────────────────────── */
  .main {
    margin-left: var(--sidebar-w);
    min-height: 100vh;
    padding: 48px 64px;
    max-width: calc(var(--sidebar-w) + 820px);
  }

  /* ── Sections ────────────────────────────────────────── */
  .section { display: none; }
  .section.active { display: block; }

  /* ── Typography ──────────────────────────────────────── */
  h1 {
    font-size: 36px;
    font-weight: 700;
    letter-spacing: -1px;
    line-height: 1.15;
    color: var(--text);
    margin-bottom: 12px;
  }

  h2 {
    font-size: 22px;
    font-weight: 600;
    letter-spacing: -0.4px;
    margin: 40px 0 14px;
    color: var(--text);
    padding-top: 8px;
  }

  h3 {
    font-size: 17px;
    font-weight: 600;
    margin: 24px 0 10px;
    color: var(--text);
  }

  p { margin-bottom: 14px; color: var(--text); }

  a { color: var(--accent); text-decoration: none; }
  a:hover { text-decoration: underline; }

  ul, ol { padding-left: 22px; margin-bottom: 14px; }
  li { margin-bottom: 5px; }

  /* ── Hero ────────────────────────────────────────────── */
  .hero {
    background: linear-gradient(135deg, #0071e3 0%, #0a84ff 50%, #34aadc 100%);
    border-radius: var(--radius);
    padding: 40px 44px;
    color: white;
    margin-bottom: 40px;
    position: relative;
    overflow: hidden;
  }

  .hero::before {
    content: "πŸŽ“";
    position: absolute;
    right: 36px; top: 50%;
    transform: translateY(-50%);
    font-size: 80px;
    opacity: 0.25;
  }

  .hero h1 { color: white; font-size: 32px; margin-bottom: 8px; }
  .hero p { color: rgba(255,255,255,0.88); font-size: 16px; margin: 0; }

  .hero-badges {
    display: flex; gap: 8px; flex-wrap: wrap;
    margin-top: 20px;
  }

  .badge {
    background: rgba(255,255,255,0.2);
    border: 1px solid rgba(255,255,255,0.3);
    color: white;
    padding: 4px 12px;
    border-radius: 100px;
    font-size: 12px;
    font-weight: 500;
  }

  /* ── Cards ───────────────────────────────────────────── */
  .card {
    background: var(--surface);
    border-radius: var(--radius);
    padding: 24px;
    margin-bottom: 20px;
    box-shadow: var(--shadow);
    border: 1px solid var(--border);
  }

  .card h3 { margin-top: 0; }

  .card-grid {
    display: grid;
    grid-template-columns: repeat(auto-fit, minmax(200px, 1fr));
    gap: 16px;
    margin-bottom: 24px;
  }

  .card-sm {
    background: var(--surface);
    border-radius: var(--radius-sm);
    padding: 20px;
    box-shadow: var(--shadow);
    border: 1px solid var(--border);
    text-align: center;
  }

  .card-sm .icon-big { font-size: 28px; display: block; margin-bottom: 8px; }
  .card-sm h4 { font-size: 14px; font-weight: 600; margin-bottom: 4px; }
  .card-sm p { font-size: 13px; color: var(--text-secondary); margin: 0; }

  /* ── Code ────────────────────────────────────────────── */
  pre {
    background: var(--code-bg);
    color: var(--code-text);
    border-radius: var(--radius-sm);
    padding: 20px 22px;
    overflow-x: auto;
    font-family: var(--font-mono);
    font-size: 13px;
    line-height: 1.7;
    margin: 16px 0;
  }

  code {
    font-family: var(--font-mono);
    font-size: 13px;
    background: rgba(255,255,255,0.08);
    padding: 2px 6px;
    border-radius: 4px;
    color: #ff6b6b;
  }

  pre code {
    background: none;
    padding: 0;
    color: inherit;
    font-size: inherit;
  }

  /* Syntax highlight colours */
  .kw { color: #ff7ab2; }    /* keywords */
  .cm { color: #7f9f7f; }    /* comments */
  .st { color: #fc6a5d; }    /* strings */
  .nb { color: #67b7a4; }    /* builtins */
  .cn { color: #ffd66b; }    /* constants */

  /* ── Steps ───────────────────────────────────────────── */
  .steps { counter-reset: step; }

  .step {
    display: flex; gap: 18px;
    margin-bottom: 20px;
    align-items: flex-start;
  }

  .step-num {
    counter-increment: step;
    min-width: 32px; height: 32px;
    background: var(--accent);
    color: white;
    border-radius: 50%;
    display: flex; align-items: center; justify-content: center;
    font-size: 13px; font-weight: 700;
    flex-shrink: 0;
    margin-top: 2px;
  }

  .step-num::before { content: counter(step); }

  .step-body { flex: 1; }
  .step-body strong { display: block; font-size: 15px; margin-bottom: 4px; }
  .step-body p { margin: 0; color: var(--text-secondary); font-size: 14px; }

  /* ── Table ───────────────────────────────────────────── */
  table {
    width: 100%;
    border-collapse: collapse;
    margin: 16px 0 24px;
    font-size: 14px;
  }

  th {
    text-align: left;
    padding: 10px 14px;
    background: var(--bg);
    font-weight: 600;
    font-size: 12px;
    letter-spacing: 0.04em;
    text-transform: uppercase;
    color: var(--text-secondary);
    border-bottom: 1px solid var(--border);
  }

  td {
    padding: 11px 14px;
    border-bottom: 1px solid var(--border);
    vertical-align: top;
  }

  tr:last-child td { border-bottom: none; }
  tr:hover td { background: rgba(255,255,255,0.04); }

  /* ── Callout ─────────────────────────────────────────── */
  .callout {
    border-radius: var(--radius-sm);
    padding: 14px 18px;
    margin: 16px 0;
    display: flex; gap: 12px; align-items: flex-start;
    font-size: 14px;
  }

  .callout-icon { font-size: 18px; flex-shrink: 0; margin-top: 1px; }
  .callout.info { background: #0a1f3a; border-left: 3px solid #2997ff; }
  .callout.warn { background: #2a1f00; border-left: 3px solid #f5a623; }
  .callout.tip  { background: #0a2018; border-left: 3px solid #30d158; }
  .callout p { margin: 0; }

  /* ── Tag ─────────────────────────────────────────────── */
  .tag {
    display: inline-block;
    background: var(--tag-bg);
    color: var(--tag-text);
    padding: 2px 8px;
    border-radius: 4px;
    font-size: 12px;
    font-weight: 500;
    font-family: var(--font-mono);
  }

  /* ── Architecture tree ───────────────────────────────── */
  .tree {
    background: var(--code-bg);
    color: var(--code-text);
    border-radius: var(--radius-sm);
    padding: 20px 22px;
    font-family: var(--font-mono);
    font-size: 13px;
    line-height: 1.9;
  }

  .tree .dir { color: #67b7a4; font-weight: 600; }
  .tree .file { color: #e8e8ed; }
  .tree .note { color: #7f9f7f; }

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<!-- ═══ SIDEBAR ═══════════════════════════════════════════════════════ -->
<nav class="sidebar" id="sidebar">
  <div class="sidebar-logo">
    <h1>PhdScout πŸŽ“</h1>
    <span>Documentation</span>
  </div>

  <span class="nav-section">Getting Started</span>
  <button class="nav-link active" onclick="show('overview', this)">
    <span class="icon">🏠</span> Overview
  </button>
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    <span class="icon">βš™οΈ</span> Installation
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    <span class="icon">πŸš€</span> Quickstart
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    <span class="icon">πŸ–₯️</span> Web Interface
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    <span class="icon">πŸ’»</span> CLI
  </button>
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    <span class="icon">πŸ”</span> Job Sources
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    <span class="icon">πŸ”§</span> Configuration
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    <span class="icon">✏️</span> Prompts
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    <span class="icon">πŸ—οΈ</span> Architecture
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<main class="main">

  <!-- ── Overview ───────────────────────────────────────────────────── -->
  <section class="section active" id="overview">
    <div class="hero">
      <h1>PhdScout</h1>
      <p>AI-powered search agent for PhD positions, postdocs, research fellowships, and academic staff roles. Powered by the Groq free API β€” no subscriptions required.</p>
      <div class="hero-badges">
        <span class="badge">100% Free</span>
        <span class="badge">Groq API</span>
        <span class="badge">Gradio UI</span>
        <span class="badge">Python 3.10+</span>
      </div>
    </div>

    <div class="card-grid">
      <div class="card-sm">
        <span class="icon-big">πŸ”</span>
        <h4>Multi-source Search</h4>
        <p>5 job boards searched simultaneously β€” Europe, worldwide, and country-specific</p>
      </div>
      <div class="card-sm">
        <span class="icon-big">πŸ€–</span>
        <h4>AI Scoring</h4>
        <p>Each position scored 0–100 against your CV profile</p>
      </div>
      <div class="card-sm">
        <span class="icon-big">βœ‰οΈ</span>
        <h4>Cover Letters</h4>
        <p>Personalised draft generated for every position</p>
      </div>
      <div class="card-sm">
        <span class="icon-big">πŸ“¦</span>
        <h4>ZIP Export</h4>
        <p>Download all approved applications in one click</p>
      </div>
    </div>

    <h2>How it works</h2>
    <div class="card">
      <div class="steps">
        <div class="step">
          <div class="step-num"></div>
          <div class="step-body">
            <strong>Upload your CV</strong>
            <p>PDF, DOCX, or TXT. The LLM extracts a structured profile: education, publications, skills, research interests.</p>
          </div>
        </div>
        <div class="step">
          <div class="step-num"></div>
          <div class="step-body">
            <strong>Search job boards</strong>
            <p>PhdScout queries Euraxess, mlscientist.com, jobs.ac.uk, scholarshipdb.net, and nature.com/careers in parallel, then deduplicates and filters by recency (expired listings discarded).</p>
          </div>
        </div>
        <div class="step">
          <div class="step-num"></div>
          <div class="step-body">
            <strong>Score & rank</strong>
            <p>Each position is scored 0–100 for fit. The LLM reasons semantically β€” "NLP" and "natural language processing" are treated as equivalent. Postdoc and fellowship positions are automatically penalised when the candidate's CV shows no completed or in-progress PhD.</p>
          </div>
        </div>
        <div class="step">
          <div class="step-num"></div>
          <div class="step-body">
            <strong>Review & edit</strong>
            <p>Load any position to see CV tailoring hints and a draft cover letter. Edit freely before approving.</p>
          </div>
        </div>
        <div class="step">
          <div class="step-num"></div>
          <div class="step-body">
            <strong>Export</strong>
            <p>Download all approved applications as a ZIP containing cover letters and position summaries.</p>
          </div>
        </div>
      </div>
    </div>
  </section>

  <!-- ── Installation ───────────────────────────────────────────────── -->
  <section class="section" id="install">
    <h1>Installation</h1>
    <p>PhdScout runs locally with Python 3.10+ or on HuggingFace Spaces.</p>

    <h2>Clone & install</h2>
    <pre><code>git clone https://github.com/Hipsterfil998/PhDScout.git
cd PhDScout
pip install -r requirements.txt</code></pre>

    <h2>Get a Groq API key</h2>
    <div class="callout info">
      <span class="callout-icon">ℹ️</span>
      <p>Groq provides a generous free tier β€” no credit card required. Register at <a href="https://console.groq.com/keys" target="_blank">console.groq.com/keys</a>.</p>
    </div>

    <h2>Configure</h2>
    <p>Create a <code>.env</code> file in the project root:</p>
    <pre><code><span class="cm"># Required</span>
LLM_BACKEND=groq
GROQ_API_KEY=gsk_your_key_here

<span class="cm"># Optional overrides (see Configuration section)</span>
OUTPUT_DIR=./output</code></pre>

    <h2>Run</h2>
    <pre><code>python app.py</code></pre>
    <p>Open <a href="http://localhost:7860">http://localhost:7860</a> in your browser.</p>

    <h2>Dependencies</h2>
    <table>
      <tr><th>Package</th><th>Purpose</th></tr>
      <tr><td><code>openai</code></td><td>Groq and Ollama API client (OpenAI-compatible)</td></tr>
      <tr><td><code>gradio</code></td><td>Web UI</td></tr>
      <tr><td><code>pdfplumber</code></td><td>PDF text extraction</td></tr>
      <tr><td><code>python-docx</code></td><td>DOCX text extraction</td></tr>
      <tr><td><code>beautifulsoup4 + lxml</code></td><td>HTML scraping</td></tr>
      <tr><td><code>requests</code></td><td>HTTP client for scrapers</td></tr>
      <tr><td><code>python-dotenv</code></td><td>.env loading</td></tr>
    </table>
  </section>

  <!-- ── Quickstart ─────────────────────────────────────────────────── -->
  <section class="section" id="quickstart">
    <h1>Quickstart</h1>
    <p>From zero to your first scored job list in under 5 minutes.</p>

    <div class="card">
      <div class="steps">
        <div class="step">
          <div class="step-num"></div>
          <div class="step-body">
            <strong>Upload your CV</strong>
            <p>Click the upload area and select your PDF, DOCX, or TXT file.</p>
          </div>
        </div>
        <div class="step">
          <div class="step-num"></div>
          <div class="step-body">
            <strong>Fill in the search fields</strong>
            <p>Enter a research field (<em>"machine learning"</em>, <em>"computational neuroscience"</em>…), choose a location, and pick a position type.</p>
          </div>
        </div>
        <div class="step">
          <div class="step-num"></div>
          <div class="step-body">
            <strong>Click "Parse CV & Search Positions"</strong>
            <p>Wait ~2–3 minutes. The agent scrapes all sources, parses your CV, and scores every match.</p>
          </div>
        </div>
        <div class="step">
          <div class="step-num"></div>
          <div class="step-body">
            <strong>Review results</strong>
            <p>Switch to the <strong>Results</strong> tab. Positions are sorted by posting date (newest first) and labelled with a freshness indicator.</p>
          </div>
        </div>
        <div class="step">
          <div class="step-num"></div>
          <div class="step-body">
            <strong>Generate & approve cover letters</strong>
            <p>In <strong>Review & Edit</strong>, select a position, read the CV hints, edit the draft, and click <strong>Approve & Save</strong>.</p>
          </div>
        </div>
        <div class="step">
          <div class="step-num"></div>
          <div class="step-body">
            <strong>Export</strong>
            <p>Go to the <strong>Export</strong> tab and download the ZIP.</p>
          </div>
        </div>
      </div>
    </div>

    <div class="callout tip">
      <span class="callout-icon">πŸ’‘</span>
      <p><strong>Tip:</strong> Use comma-separated fields for broader searches: <em>"machine learning, NLP, computer vision"</em>.</p>
    </div>
  </section>

  <!-- ── Web UI ─────────────────────────────────────────────────────── -->
  <section class="section" id="web-ui">
    <h1>Web Interface</h1>
    <p>The Gradio UI is organised into three tabs.</p>

    <h2>Tab 1 β€” Setup &amp; Search</h2>
    <div class="card">
      <table>
        <tr><th>Field</th><th>Description</th></tr>
        <tr><td><strong>CV upload</strong></td><td>PDF, DOCX, or TXT file</td></tr>
        <tr><td><strong>Research field</strong></td><td>Free-text or comma-separated list</td></tr>
        <tr><td><strong>Location</strong></td><td>40+ countries or custom value</td></tr>
        <tr><td><strong>Position type</strong></td><td>PhD, postdoc, predoctoral, fellowship, research staff</td></tr>
        <tr><td><strong>Min. match score</strong></td><td>Threshold for the "above score" count (all positions still visible)</td></tr>
      </table>
    </div>

    <h2>Tab 2 β€” Results</h2>
    <p>Displays a scored table with columns: <strong>#</strong>, <strong>Score</strong>, <strong>Title</strong>, <strong>Institution</strong>, <strong>Type</strong>, <strong>Freshness</strong>, <strong>Rec.</strong>, <strong>Why good fit</strong>.</p>

    <h3>Freshness labels</h3>
    <table>
      <tr><th>Label</th><th>Meaning</th></tr>
      <tr><td><span class="tag">🟒 Recent</span></td><td>Posted within the last 30 days</td></tr>
      <tr><td><span class="tag">🟑 Older</span></td><td>Has a date, posted more than 30 days ago</td></tr>
      <tr><td><span class="tag">πŸ”΄ Closing soon</span></td><td>Deadline within 14 days</td></tr>
      <tr><td><em>empty</em></td><td>No date information available</td></tr>
    </table>

    <div class="callout info">
      <span class="callout-icon">ℹ️</span>
      <p>Expired listings (deadline already passed, or posted in a previous year) are automatically excluded from results.</p>
    </div>

    <h2>Tab 3 β€” Review &amp; Edit</h2>
    <p>Select a position from the dropdown, click <strong>Load Position</strong>, then:</p>
    <ul>
      <li>Read the <strong>Position Details</strong> and match analysis</li>
      <li>Follow the <strong>CV Tailoring Hints</strong> panel</li>
      <li>Edit the <strong>Cover Letter</strong> draft freely</li>
      <li>Click <strong>Regenerate</strong> for a different version</li>
      <li>Download the letter as a <strong>.txt</strong> file</li>
      <li>Click <strong>Approve &amp; Save</strong> to add it to the export queue</li>
    </ul>
  </section>

  <!-- ── CLI ────────────────────────────────────────────────────────── -->
  <section class="section" id="cli">
    <h1>Command-Line Interface</h1>
    <p>For batch use or scripting, PhdScout exposes a CLI via <code>main.py</code>.</p>

    <h2>Basic usage</h2>
    <pre><code>python main.py \
  --cv path/to/cv.pdf \
  --field "machine learning" \
  --location "Germany" \
  --type phd</code></pre>

    <h2>Options</h2>
    <table>
      <tr><th>Flag</th><th>Default</th><th>Description</th></tr>
      <tr><td><code>--cv</code></td><td><em>required</em></td><td>Path to CV file (PDF, DOCX, TXT)</td></tr>
      <tr><td><code>--field</code></td><td><em>required</em></td><td>Research field(s), comma-separated</td></tr>
      <tr><td><code>--location</code></td><td><code>Europe</code></td><td>Location filter</td></tr>
      <tr><td><code>--type</code></td><td><code>phd</code></td><td>Position type</td></tr>
      <tr><td><code>--min-score</code></td><td><code>60</code></td><td>Minimum match score to show</td></tr>
    </table>

    <h2>Python API</h2>
    <pre><code><span class="kw">from</span> agent <span class="kw">import</span> JobAgent

agent = JobAgent(
    model=<span class="st">"llama-3.1-8b-instant"</span>,
    backend=<span class="st">"groq"</span>,
    api_key=<span class="st">"gsk_..."</span>,
)

profile, profile_text = agent.parse_cv(<span class="st">"cv.pdf"</span>)
jobs = agent.search_jobs(field=<span class="st">"NLP"</span>, location=<span class="st">"Europe"</span>, position_type=<span class="st">"phd"</span>)
scored = agent.score_jobs(jobs, profile_text)

<span class="kw">for</span> job <span class="kw">in</span> scored[:5]:
    m = job[<span class="st">"match"</span>]
    <span class="nb">print</span>(m[<span class="st">"match_score"</span>], job[<span class="st">"title"</span>], job.get(<span class="st">"freshness"</span>))</code></pre>
  </section>

  <!-- ── Sources ────────────────────────────────────────────────────── -->
  <section class="section" id="sources">
    <h1>Job Sources</h1>

    <div class="card-grid">
      <div class="card-sm">
        <span class="icon-big">πŸ‡ͺπŸ‡Ί</span>
        <h4>Euraxess</h4>
        <p>EU/worldwide research portal. Country-filtered via API parameters.</p>
      </div>
      <div class="card-sm">
        <span class="icon-big">πŸ€–</span>
        <h4>mlscientist.com</h4>
        <p>ML &amp; AI academic positions. 14 country categories supported.</p>
      </div>
      <div class="card-sm">
        <span class="icon-big">πŸ‡¬πŸ‡§</span>
        <h4>jobs.ac.uk</h4>
        <p>UK academic jobs. Queried only when UK or Worldwide is selected.</p>
      </div>
      <div class="card-sm">
        <span class="icon-big">🌍</span>
        <h4>scholarshipdb.net</h4>
        <p>Worldwide aggregator with 28k+ positions across all disciplines. Country-filtered via URL path.</p>
      </div>
      <div class="card-sm">
        <span class="icon-big">πŸ”¬</span>
        <h4>nature.com/careers</h4>
        <p>Multidisciplinary global board. Keyword search + ISO country code filtering.</p>
      </div>
    </div>

    <h2>Freshness filtering</h2>
    <p>After scraping, PhdScout automatically removes:</p>
    <ul>
      <li>Postings with a <strong>posting date in a previous year</strong></li>
      <li>Postings with a <strong>deadline already passed</strong></li>
      <li>Jobs with no date info are kept (benefit of the doubt)</li>
    </ul>

    <h2>PhD eligibility gate</h2>
    <p>Before scoring, PhdScout checks whether the candidate holds or is pursuing a PhD and enforces two caps on postdoc and fellowship positions:</p>
    <table>
      <tr><th>Candidate status</th><th>Postdoc / Fellowship score cap</th></tr>
      <tr><td>No PhD detected in CV</td><td>≀ 30 β€” set to <em>skip</em></td></tr>
      <tr><td>PhD in progress (candidate / student)</td><td>≀ 65</td></tr>
      <tr><td>PhD completed</td><td>No cap</td></tr>
    </table>
    <div class="callout info">
      <span class="callout-icon">ℹ️</span>
      <p>This gate is enforced at two levels: in the LLM prompt (via <code>JOB_MATCHER_PROMPT</code>) and in code (<code>agent/matching/matcher.py</code>) as a safety net. PhD positions are always open to master's graduates β€” no cap applies.</p>
    </div>

    <h2>Adding a source</h2>
    <p>Create a new file in <code>agent/search/scrapers/</code> that subclasses <code>BaseScraper</code>:</p>
    <pre><code><span class="kw">from</span> agent.search.scrapers.base <span class="kw">import</span> BaseScraper

<span class="kw">class</span> MyScraper(BaseScraper):
    name = <span class="st">"mysource"</span>

    <span class="kw">def</span> scrape(self, field, location, position_type):
        soup = self._fetch(<span class="st">f"https://example.com/jobs?q={field}"</span>)
        <span class="kw">if</span> soup <span class="kw">is</span> <span class="nb">None</span>: <span class="kw">return</span> []
        results = []
        <span class="kw">for</span> card <span class="kw">in</span> soup.select(<span class="st">".job-card"</span>):
            results.append({
                <span class="st">"title"</span>: card.select_one(<span class="st">"h2"</span>).text,
                <span class="st">"url"</span>: card.select_one(<span class="st">"a"</span>)[<span class="st">"href"</span>],
                <span class="st">"posted"</span>: card.select_one(<span class="st">".date"</span>).text,
                <span class="st">"source"</span>: self.name,
                <span class="st">"type"</span>: self._detect_type(card.text, <span class="st">""</span>),
            })
        <span class="kw">return</span> results</code></pre>
    <p>Then register it in <code>agent/search/searcher.py β†’ _build_scrapers()</code>.</p>
  </section>

  <!-- ── Configuration ──────────────────────────────────────────────── -->
  <section class="section" id="config">
    <h1>Configuration</h1>
    <p>All settings live in <code>config.py</code>. Edit the file directly β€” no restart needed if using the CLI, restart the Gradio app after changes.</p>

    <h2>LLM settings</h2>
    <table>
      <tr><th>Parameter</th><th>Default</th><th>Description</th></tr>
      <tr><td><code>default_model</code></td><td><code>llama-3.1-8b-instant</code></td><td>Groq model to use</td></tr>
      <tr><td><code>max_tokens</code></td><td><code>4096</code></td><td>Max tokens per LLM response</td></tr>
      <tr><td><code>llm_backend</code></td><td><code>ollama</code></td><td>Backend: <code>groq</code> | <code>huggingface</code> | <code>ollama</code></td></tr>
    </table>

    <h2>Scraper settings</h2>
    <table>
      <tr><th>Parameter</th><th>Default</th><th>Description</th></tr>
      <tr><td><code>scraper_delay</code></td><td><code>1.5</code> s</td><td>Polite delay between HTTP requests</td></tr>
      <tr><td><code>max_results_per_source</code></td><td><code>20</code></td><td>Max listings fetched per source</td></tr>
    </table>

    <h2>Freshness thresholds</h2>
    <table>
      <tr><th>Parameter</th><th>Default</th><th>Description</th></tr>
      <tr><td><code>recent_days</code></td><td><code>30</code></td><td>Days since posting β†’ 🟒 Recent</td></tr>
      <tr><td><code>deadline_warn_days</code></td><td><code>14</code></td><td>Days until deadline β†’ πŸ”΄ Closing soon</td></tr>
    </table>

    <h2>UI defaults</h2>
    <table>
      <tr><th>Parameter</th><th>Default</th><th>Description</th></tr>
      <tr><td><code>min_score_default</code></td><td><code>60</code></td><td>Default minimum match score slider value</td></tr>
    </table>

    <h2>Environment variables</h2>
    <table>
      <tr><th>Variable</th><th>Description</th></tr>
      <tr><td><code>GROQ_API_KEY</code></td><td>Groq API key (takes priority over HF_TOKEN)</td></tr>
      <tr><td><code>HF_TOKEN</code></td><td>HuggingFace token (fallback backend)</td></tr>
      <tr><td><code>LLM_BACKEND</code></td><td>Override backend: <code>groq</code> | <code>huggingface</code> | <code>ollama</code></td></tr>
      <tr><td><code>OUTPUT_DIR</code></td><td>Output directory for ZIP exports (default: <code>./output</code>)</td></tr>
    </table>
  </section>

  <!-- ── Prompts ────────────────────────────────────────────────────── -->
  <section class="section" id="prompts">
    <h1>Prompts</h1>
    <p>All LLM prompts live in <code>agent/prompts/</code>. Each service has its own file β€” edit the relevant file to tune that part of the agent's behaviour.</p>

    <div class="callout warn">
      <span class="callout-icon">⚠️</span>
      <p>Prompts use Python <code>.format()</code> placeholders like <code>{profile}</code>. Keep all placeholders intact when editing.</p>
    </div>

    <h2>Available prompts</h2>
    <table>
      <tr><th>Constant</th><th>Used by</th><th>Controls</th></tr>
      <tr><th colspan="3" style="background:var(--bg);font-size:12px;color:var(--text-secondary);font-weight:500;">File: <code>agent/prompts/cv_parser.py</code></th></tr>
      <tr><td><code>CV_PARSER_SYSTEM</code><br><code>CV_PARSER_PROMPT</code></td><td><code>CVParser</code></td><td>How the CV is structured into JSON. Tweak to extract custom fields.</td></tr>
      <tr><th colspan="3" style="background:var(--bg);font-size:12px;color:var(--text-secondary);font-weight:500;">File: <code>agent/prompts/job_matcher.py</code></th></tr>
      <tr><td><code>JOB_MATCHER_SYSTEM</code><br><code>JOB_MATCHER_PROMPT</code></td><td><code>JobMatcher</code></td><td>Scoring criteria, eligibility gate, and scoring guide. Edit thresholds here.</td></tr>
      <tr><th colspan="3" style="background:var(--bg);font-size:12px;color:var(--text-secondary);font-weight:500;">File: <code>agent/prompts/cv_tailor.py</code></th></tr>
      <tr><td><code>CV_TAILOR_SYSTEM</code><br><code>CV_TAILOR_PROMPT</code></td><td><code>CVTailor</code></td><td>What tailoring hints to produce and how specific to be.</td></tr>
      <tr><th colspan="3" style="background:var(--bg);font-size:12px;color:var(--text-secondary);font-weight:500;">File: <code>agent/prompts/cover_letter.py</code></th></tr>
      <tr><td><code>COVER_LETTER_SYSTEM</code><br><code>COVER_LETTER_PROMPT</code></td><td><code>CoverLetterWriter</code></td><td>Letter style, length, structure, and language detection.</td></tr>
    </table>

    <h2>Example: changing the letter length</h2>
    <p>In <code>agent/prompts/cover_letter.py</code>, find <code>COVER_LETTER_SYSTEM</code> and change:</p>
    <pre><code><span class="cm"># Before</span>
The letter should be <span class="st">400-600 words (3-4 paragraphs)</span>.

<span class="cm"># After</span>
The letter should be <span class="st">250-350 words (2-3 paragraphs)</span>.</code></pre>

    <h2>Example: stricter scoring</h2>
    <p>In <code>JOB_MATCHER_PROMPT</code>, raise the thresholds in the scoring guide:</p>
    <pre><code>Scoring guide:
  85-100: Excellent β€” perfect research keyword overlap, recent publications
  70-84:  Good β€” strong overlap on primary research area
  50-69:  Partial β€” some overlap, transferable skills
  0-49:   Skip β€” different area or missing key requirements</code></pre>
  </section>

  <!-- ── Architecture ───────────────────────────────────────────────── -->
  <section class="section" id="architecture">
    <h1>Architecture</h1>

    <h2>Project structure</h2>
    <div class="tree">
<span class="dir">PhDScout/</span>
β”œβ”€β”€ <span class="file">app.py</span>              <span class="note"># Gradio web interface</span>
β”œβ”€β”€ <span class="file">config.py</span>           <span class="note"># Runtime settings (model, thresholds, delays)</span>
β”œβ”€β”€ <span class="file">main.py</span>             <span class="note"># CLI entry point</span>
β”œβ”€β”€ <span class="file">requirements.txt</span>
β”œβ”€β”€ <span class="dir">agent/</span>
β”‚   β”œβ”€β”€ <span class="file">__init__.py</span>         <span class="note"># Public API: JobAgent, LLMQuotaError</span>
β”‚   β”œβ”€β”€ <span class="file">pipeline.py</span>         <span class="note"># JobAgent orchestrator</span>
β”‚   β”œβ”€β”€ <span class="file">base_service.py</span>     <span class="note"># BaseLLMService base class</span>
β”‚   β”œβ”€β”€ <span class="file">llm_client.py</span>       <span class="note"># Groq / HuggingFace / Ollama client</span>
β”‚   β”œβ”€β”€ <span class="file">utils.py</span>            <span class="note"># JSON parsing, shared helpers</span>
β”‚   β”œβ”€β”€ <span class="dir">prompts/</span>            <span class="note"># LLM prompts β€” one file per service</span>
β”‚   β”‚   β”œβ”€β”€ <span class="file">cv_parser.py</span>    <span class="note"># CV extraction prompts</span>
β”‚   β”‚   β”œβ”€β”€ <span class="file">job_matcher.py</span>  <span class="note"># Scoring + eligibility gate prompts</span>
β”‚   β”‚   β”œβ”€β”€ <span class="file">cv_tailor.py</span>    <span class="note"># Tailoring hints prompts</span>
β”‚   β”‚   └── <span class="file">cover_letter.py</span> <span class="note"># Cover letter prompts</span>
β”‚   β”œβ”€β”€ <span class="dir">cv/</span>                 <span class="note"># CV-related services</span>
β”‚   β”‚   β”œβ”€β”€ <span class="file">parser.py</span>       <span class="note"># CV extraction + LLM parsing</span>
β”‚   β”‚   β”œβ”€β”€ <span class="file">tailor.py</span>       <span class="note"># Tailoring hints generator</span>
β”‚   β”‚   └── <span class="file">cover_letter.py</span> <span class="note"># Cover letter writer</span>
β”‚   β”œβ”€β”€ <span class="dir">matching/</span>           <span class="note"># Scoring engine</span>
β”‚   β”‚   └── <span class="file">matcher.py</span>      <span class="note"># JobMatcher + PhD eligibility cap</span>
β”‚   └── <span class="dir">search/</span>             <span class="note"># Job search infrastructure</span>
β”‚       β”œβ”€β”€ <span class="file">searcher.py</span>     <span class="note"># JobSearcher (orchestrates scrapers)</span>
β”‚       └── <span class="dir">scrapers/</span>
β”‚           β”œβ”€β”€ <span class="file">base.py</span>           <span class="note"># BaseScraper ABC + shared helpers</span>
β”‚           β”œβ”€β”€ <span class="file">euraxess.py</span>       <span class="note"># EU/worldwide research portal</span>
β”‚           β”œβ”€β”€ <span class="file">mlscientist.py</span>    <span class="note"># ML &amp; AI academic positions</span>
β”‚           β”œβ”€β”€ <span class="file">jobs_ac_uk.py</span>     <span class="note"># UK academic jobs (UK/worldwide only)</span>
β”‚           β”œβ”€β”€ <span class="file">scholarshipdb.py</span>  <span class="note"># Worldwide aggregator (28k+ positions)</span>
β”‚           └── <span class="file">nature_careers.py</span> <span class="note"># nature.com/careers β€” multidisciplinary</span>
└── <span class="dir">tests/</span>              <span class="note"># 156 unit tests (pytest)</span>
    </div>

    <h2>Pipeline flow</h2>
    <div class="card">
      <p style="font-family:var(--font-mono);font-size:13px;line-height:2;color:var(--text);">
        CV file<br>
        &nbsp;&nbsp;↓ <span style="color:#98989d">CVParser.extract_raw_text()</span><br>
        Raw text<br>
        &nbsp;&nbsp;↓ <span style="color:#98989d">CVParser.parse() β†’ LLM β†’ CVProfile JSON</span><br>
        &nbsp;&nbsp;↓ <span style="color:#98989d">CVParser.summarize() β†’ profile_text</span><br>
        profile_text<br>
        &nbsp;&nbsp;↓ (in parallel with search)<br>
        &nbsp;&nbsp;↓ <span style="color:#98989d">JobSearcher.search() β†’ scrapers β†’ deduplicate β†’ filter stale β†’ label freshness</span><br>
        jobs[]<br>
        &nbsp;&nbsp;↓ <span style="color:#98989d">JobMatcher.score_all() β†’ LLM Γ— N β†’ sort by score</span><br>
        scored_jobs[]<br>
        &nbsp;&nbsp;↓ (per selected job)<br>
        &nbsp;&nbsp;↓ <span style="color:#98989d">CVTailor.generate() β†’ LLM β†’ TailoringHints</span><br>
        &nbsp;&nbsp;↓ <span style="color:#98989d">CoverLetterWriter.generate() β†’ LLM β†’ draft letter</span><br>
        approved_jobs[] β†’ ZIP export
      </p>
    </div>

    <h2>LLM backends</h2>
    <table>
      <tr><th>Backend</th><th>env var</th><th>Notes</th></tr>
      <tr><td><strong>Groq</strong> (recommended)</td><td><code>GROQ_API_KEY</code></td><td>Free tier, fast, OpenAI-compatible</td></tr>
      <tr><td><strong>Ollama</strong></td><td>β€”</td><td>Local inference, set <code>LLM_BACKEND=ollama</code></td></tr>
      <tr><td><strong>HuggingFace</strong></td><td><code>HF_TOKEN</code></td><td>Fallback, free tier has rate limits</td></tr>
    </table>
  </section>

  <!-- ── Deployment ─────────────────────────────────────────────────── -->
  <section class="section" id="deployment">
    <h1>Deployment</h1>

    <h2>HuggingFace Spaces (recommended)</h2>
    <div class="card">
      <div class="steps">
        <div class="step">
          <div class="step-num"></div>
          <div class="step-body">
            <strong>Fork or create a Space</strong>
            <p>Go to <a href="https://huggingface.co/spaces" target="_blank">huggingface.co/spaces</a> β†’ New Space β†’ SDK: Gradio.</p>
          </div>
        </div>
        <div class="step">
          <div class="step-num"></div>
          <div class="step-body">
            <strong>Push the code</strong>
            <p>Add the Space as a remote and push: <code>git push space main</code></p>
          </div>
        </div>
        <div class="step">
          <div class="step-num"></div>
          <div class="step-body">
            <strong>Set secrets</strong>
            <p>In Space Settings β†’ Variables and Secrets, add <code>GROQ_API_KEY</code>.</p>
          </div>
        </div>
        <div class="step">
          <div class="step-num"></div>
          <div class="step-body">
            <strong>Add HF frontmatter to README</strong>
            <p>Run <code>./push_to_hf.sh</code> β€” it injects the required YAML frontmatter automatically.</p>
          </div>
        </div>
      </div>
    </div>

    <h2>GitHub Pages (this documentation)</h2>
    <div class="callout tip">
      <span class="callout-icon">πŸ’‘</span>
      <p>This documentation is a single HTML file at <code>docs/index.html</code> β€” no build step required.</p>
    </div>
    <p>To enable GitHub Pages:</p>
    <ol>
      <li>Go to your GitHub repo β†’ <strong>Settings β†’ Pages</strong></li>
      <li>Source: <strong>Deploy from a branch</strong></li>
      <li>Branch: <code>main</code> / folder: <code>/docs</code></li>
      <li>Click <strong>Save</strong></li>
    </ol>
    <p>The docs will be live at <code>https://&lt;username&gt;.github.io/PhDScout</code>.</p>

    <h2>Editing the docs</h2>
    <p>To modify this documentation directly on GitHub:</p>
    <ol>
      <li>Go to your repo on GitHub</li>
      <li>Navigate to <code>docs/index.html</code></li>
      <li>Click the <strong>pencil icon</strong> (Edit this file)</li>
      <li>Edit the HTML β€” each section is a <code>&lt;section class="section" id="..."&gt;</code> block</li>
      <li>Commit directly to <code>main</code> β€” GitHub Pages rebuilds automatically</li>
    </ol>

    <div class="callout info">
      <span class="callout-icon">ℹ️</span>
      <p>The navigation links are wired by JavaScript at the bottom of the file. To add a new section: add a <code>&lt;button&gt;</code> in the sidebar and a matching <code>&lt;section&gt;</code> in the main area.</p>
    </div>
  </section>

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