Step1_VesselSeg/scripts/run.sh

#!/usr/bin/env bash
set -euo pipefail

SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)"
STEP_DIR="$(cd "${SCRIPT_DIR}/.." && pwd)"
REPRO_ROOT="$(cd "${STEP_DIR}/.." && pwd)"

PYTHON_BIN="${PYTHON_BIN:-python}"
DATASET_ROOT="${DATASET_ROOT:-${REPRO_ROOT}/../dataset/OCTA-60}"
INPUT_DIR="${INPUT_DIR:-${DATASET_ROOT}/RawImages}"
OUTPUT_DIR="${OUTPUT_DIR:-${STEP_DIR}/Output/octa60_rawimages}"

exec "${PYTHON_BIN}" "${STEP_DIR}/run_vessel_seg.py" \
  --input_dir "${INPUT_DIR}" \
  --output_dir "${OUTPUT_DIR}" \
  "$@"