Spaces:
Running
on
Zero
Running
on
Zero
File size: 700 Bytes
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class CalMetric:
def __init__(self):
pass
def diversity(self, S_pred, S_ref):
pass
def recovery(self, S_pred, S_ref):
pass
def MSE(self, S_pred, S_ref):
'''
输入: S_pred是算法预测的蛋白序列, S_ref是ground truth蛋白序列
-->通过ESMFold预测S_pred和S_ref的蛋白结构, 并进行对齐, 计算MSE
返回: MSE
'''
X_pred = ESMFold(S_pred)
S_ref = ESMFold(S_ref)
X_pred, X_ref = align(X_pred, X_ref)
result = ComputeMSE(X_pred, X_ref)
return result
def Robustness(self, model, X, S):
pass
def Efficiency(self, model, X, S):
pass |