Update app.py
Browse files
app.py
CHANGED
|
@@ -54,17 +54,18 @@ class model:
|
|
| 54 |
|
| 55 |
to_tensor = T.ToTensor()
|
| 56 |
|
| 57 |
-
|
| 58 |
|
| 59 |
if protein_image:
|
| 60 |
-
|
| 61 |
-
stacked_images = torch.stack([
|
| 62 |
processed_images = process_image(stacked_images, dataset)
|
| 63 |
nucleus_image = processed_images[0].unsqueeze(0)
|
| 64 |
protein_image = processed_images[1].unsqueeze(0)
|
| 65 |
protein_image = protein_image > 0
|
| 66 |
protein_image = 1.0 * protein_image
|
| 67 |
else:
|
|
|
|
| 68 |
protein_image = torch.ones((256, 256))
|
| 69 |
|
| 70 |
threshold, heatmap = run_image_prediction(
|
|
|
|
| 54 |
|
| 55 |
to_tensor = T.ToTensor()
|
| 56 |
|
| 57 |
+
nucleus_image = to_tensor(nucleus_image)
|
| 58 |
|
| 59 |
if protein_image:
|
| 60 |
+
protein_image = to_tensor(protein_image)
|
| 61 |
+
stacked_images = torch.stack([nucleus_image, protein_image], dim=0)
|
| 62 |
processed_images = process_image(stacked_images, dataset)
|
| 63 |
nucleus_image = processed_images[0].unsqueeze(0)
|
| 64 |
protein_image = processed_images[1].unsqueeze(0)
|
| 65 |
protein_image = protein_image > 0
|
| 66 |
protein_image = 1.0 * protein_image
|
| 67 |
else:
|
| 68 |
+
nucleus_image = process_image(nucleus_image)
|
| 69 |
protein_image = torch.ones((256, 256))
|
| 70 |
|
| 71 |
threshold, heatmap = run_image_prediction(
|