carbon-a-database-explorer / data /benchmark.json
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cgeorgiaw HF Staff
Add SQLite accession index and bounded on-demand bucket retrieval
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{
"created_at": "2026-09-30T13:29:32.577183+00:00",
"environment": "Linux / Python 3.10.16",
"note": "Workspace measurements; not Space latency. Empty app cache before each source's first load; upstream caches uncontrolled. Bytes count returned file ranges, excluding HTTP overhead.",
"index_bytes": 86016,
"results": [
{
"accession": "JBPJTW010000303.1",
"assembly": "GCA_055472895.1",
"organism": "Phakopsora pachyrhizi",
"bases": 66123,
"lookup_ms": 0.5395635962486267,
"first_load": {
"cache_hit": false,
"bytes_read": 9178665,
"range_reads": 22,
"seconds": 4.416150398552418
},
"cached_load": {
"cache_hit": true,
"bytes_read": 0,
"range_reads": 0,
"seconds": 0.0001310594379901886
},
"plot_seconds": 0.0011919979006052017,
"plot_bin_bp": 56
},
{
"accession": "CM126017.1",
"assembly": "GCA_052324655.1",
"organism": "Trichomonas vaginalis",
"bases": 35626321,
"lookup_ms": 0.39654597640037537,
"first_load": {
"cache_hit": false,
"bytes_read": 185297497,
"range_reads": 17,
"seconds": 8.835233750753105
},
"cached_load": {
"cache_hit": true,
"bytes_read": 0,
"range_reads": 0,
"seconds": 0.00029289815574884415
},
"plot_seconds": 1.9516547014936805,
"plot_bin_bp": 29689
},
{
"accession": "CM057449.1",
"assembly": "GCA_016271365.2",
"organism": "Neoceratodus forsteri",
"bases": 84713947,
"lookup_ms": 0.3896690905094147,
"first_load": {
"cache_hit": false,
"bytes_read": 186392742,
"range_reads": 22,
"seconds": 7.675006306730211
},
"cached_load": {
"cache_hit": true,
"bytes_read": 0,
"range_reads": 0,
"seconds": 0.00034056883305311203
},
"plot_seconds": 2.610140291042626,
"plot_bin_bp": 70595
}
]
}