carbon-demo / data /species.json
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lvwerra HF Staff
§4 Species: anchor prompt to 2nd exon, drop zebrafish
2c5ccd8
[
{
"symbol": "INS",
"species": [
{
"ortholog_symbol": "INS",
"ensembl_gene": "ENSG00000254647",
"ensembl_transcript": "ENST00000381330",
"chrom": "11",
"strand": -1,
"length": 1200,
"seq": "AGCCCTCCAGGACAGGCTGCATCAGAAGAGGCCATCAAGCAGGTCTGTTCCAAGGGCCTTTGCGTCAGGTGGGCTCAGGATTCCAGGGTGGCTGGACCCCAGGCCCCAGCTCTGCAGCAGGGAGGACGTGGCTGGGCTCGTGAAGCATGTGGGGGTGAGCCCAGGGGCCCCAAGGCAGGGCACCTGGCCTTCAGCCTGCCTCAGCCCTGCCTGTCTCCCAGATCACTGTCCTTCTGCCATGGCCCTGTGGATGCGCCTCCTGCCCCTGCTGGCGCTGCTGGCCCTCTGGGGACCTGACCCAGCCGCAGCCTTTGTGAACCAACACCTGTGCGGCTCACACCTGGTGGAAGCTCTCTACCTAGTGTGCGGGGAACGAGGCTTCTTCTACACACCCAAGACCCGCCGGGAGGCAGAGGACCTGCAGGGTGAGCCAACTGCCCATTGCTGCCCCTGGCCGCCCCCAGCCACCCCCTGCTCCTGGCGCTCCCACCCAGCATGGGCAGAAGGGGGCAGGAGGCTGCCACCCAGCAGGGGGTCAGGTGCACTTTTTTAAAAAGAAGTTCTCTTGGTCACGTCCTAAAAGTGACCAGCTCCCTGTGGCCCAGTCAGAATCTCAGCCTGAGGACGGTGTTGGCTTCGGCAGCCCCGAGATACATCAGAGGGTGGGCACGCTCCTCCCTCCACTCGCCCCTCAAACAAATGCCCCGCAGCCCATTTCTCCACCCTCATTTGATGACCGCAGATTCAAGTGTTTTGTTAAGTAAAGTCCTGGGTGACCTGGGGTCACAGGGTGCCCCACGCTGCCTGCCTCTGGGCGAACACCCCATCACGCCCGGAGGAGGGCGTGGCTGCCTGCCTGAGTGGGCCAGACCCCTGTCGCCAGGCCTCACGGCAGCTCCATAGTCAGGAGATGGGGAAGATGCTGGGGACAGGCCCTGGGGAGAAGTACTGGGATCACCTGTTCAGGCTCCCACTGTGACGCTGCCCCGGGGCGGGGGAAGGAGGTGGGACATGTGGGCGTTGGGGCCTGTAGGTCCACACCCAGTGTGGGTGACCCTCCCTCTAACCTGGGTCCAGCCCGGCTGGAGATGGGTGGGAGTGCGACCTAGGGCTGGCGGGCAGGCGGGCACTGTGTCTCCCTGACTGTGTCCTCCTGTGTCCCTCTGCCTCGCCGCTGTTCCGGAACCTGCTCTGCGCGGC",
"exons": [
{
"start": 0,
"end": 42
},
{
"start": 221,
"end": 425
}
],
"species_id": "homo_sapiens",
"common": "human",
"color": "#1a1a1a"
},
{
"ortholog_symbol": "Ins1",
"ensembl_gene": "ENSMUSG00000035804",
"ensembl_transcript": "ENSMUST00000039652",
"chrom": "19",
"strand": 1,
"length": 1180,
"seq": "ACCAGGCAAGTGTTTGGAAACTGCAGCTTCAGCCCCTCTGGCCATCTGCCTACCCACCCCACCTGGAGACCTTAATGGGCCAAACAGCAAAGTCCAGGGGGCAGAGAGGAGGTACTTTGGACTATAAAGCTGGTGGGCATCCAGTAACCCCCAGCCCTTAGTGACCAGCTATAATCAGAGACCATCAGCAAGCAGGTATGTACTCTCCTCTTTGGGCCTGGCTCCCCAGCCAAGACTCCAGCGACTTTAGGGAGAATGTGGGCTCCTCTCTTACATGGATCTTTTGCTAGCCTCAACCCTGCCTATCTTTCAGGTCATTGTTTCAACATGGCCCTGTTGGTGCACTTCCTACCCCTGCTGGCCCTGCTTGCCCTCTGGGAGCCCAAACCCACCCAGGCTTTTGTCAAACAGCATCTTTGTGGTCCCCACCTGGTAGAGGCTCTCTACCTGGTGTGTGGGGAGCGTGGCTTCTTCTACACACCCAAGTCCCGCCGTGAAGTGGAGGACCCACAAGTGGAACAACTGGAGCTGGGAGGAAGCCCCGGGGACCTTCAGACCTTGGCGTTGGAGGTGGCCCGGCAGAAGCGTGGCATTGTGGATCAGTGCTGCACCAGCATCTGCTCCCTCTACCAGCTGGAGAACTACTGCAACTAAGGCCCACCTCGACCCGCCCCACCCCTCTGCAATGAATAAAACTTTTGAATAAGCACCAAAAAAAAGAGTTCTATAATGAATGAAAAAGGATTGTGTATATAGACATCTTTTTCTCTGGCATTTATTGTCATGTTAGCATACTATTAAACCATTGTTAGGTTGGATGATTATATAATCATGTATGAAGCTTGTGATAAAACACCAGGAATAATTCAAGTATCTGGAATTCTGCTTCCTGCCCAAGAAGGTAGGCAACCGTGTAAATGCCACTGAAGCTACTAGTCTAAAAGTGAGTTATCTCTGTCTTTGTCTTACCCCCTGATGCTGTGATAAAACCCTGACAAGAGCAACTGACTCCTGAGAGGAAGGTTTATTCTAGCTCACAATTCCAGGTTACAAACAGTCCATCCGTAGCAGGGGAGTCACAGCAACAGGAACCTCAGGGAACTGCTCCTATTATCCCCACAATCAAGAATAGTGACCAATAAATAAGTGGATCTTTTCTCAAAAAAAAAAAAAAAAAAAA",
"exons": [
{
"start": 0,
"end": 195
},
{
"start": 313,
"end": 1180
}
],
"species_id": "mus_musculus",
"common": "mouse",
"color": "#2c5aa0"
},
{
"ortholog_symbol": "INS",
"ensembl_gene": "ENSGALG00010024574",
"ensembl_transcript": "ENSGALT00010059944",
"chrom": "5",
"strand": 1,
"length": 1200,
"seq": "TTGTCTCTTTATGAGAAATCAGCAGGGAGGCCAGCATTGGTGTGAGTGTGTGGATGGAGACAGGCTTCTGGTTATAATTGGTCATTTATTATGACTTTCAAAGCCTGATGAATAAAATATTCCTTTCCTCTTCAGAAGGTCCATTTGCTTCTGTAGTCTTGTTTTCACGTCAAAGGAGCTGAGGGACATAAGATGCCTGATGATAGCTTATTCCTCCCTTGCAACCCCCCCGTGTCTCCTTTGCTTCCTACCTCTAGGCCTCCCCCAGCTCATCATGGCTCTCTGGATCCGATCACTGCCTCTTCTGGCTCTCCTTGTCTTTTCTGGCCCTGGAACCAGCTATGCAGCTGCCAACCAGCACCTCTGTGGCTCCCACTTGGTGGAGGCTCTCTACCTGGTGTGTGGAGAGCGTGGCTTCTTCTACTCCCCCAAAGCCCGACGGGATGTCGAGCAGCCCCTAGGTAAGTCAGTTCGACCATGACTACATTCATATGCTATATGATGCAAAAAGCAACTGTCTATCTTTGATGGTGACACAAGGAATGTCCTTGGTGGGGAATGCCAGGAATACCTTAAACATACCAACAGCATCATATCACCCATGAAAAGATCGTCAGGCTAAAAAGGCAGGTGGGAGGGCAAGCAGGGAAAGGAGATTTATGAGACAGAAGGAATTGTCACAGAAAGCTCCAAATTTTTTGCTACTCTCTTGGTAGAGAGAGGCTGAAAACAGTGTTATTCCAACATTTGCATGGCAATTACTCTCACCTGGGAGTGATCATGAAAAATAAAGGTGGAAGGAACACAAGAAGCCTCTTTCTGCACCTCTTCTTGACCCACACTACCCCAGTCCTGTTCTGTGACCACATCAAGTGTGGTCATAAAAACCTCCTGCCTTCTGAAGCTGTCCATTCTTGTGCTTAAATGACTTTTTCTTGAATGTTTCCTCCTAATATTTAACCCAAATGTATCTTGTCACAAATTAGTCCTCATCTTCTCAGTAGTGGACAAAAGGAACAGTCTATCATTTCTCCTTCATGGGTGATTTTCAAACAGTTTAAAAATTGCTTCCATGTCTTGTTTTTATCTACTGTGAGCTAAAAGCCCTCAACAGCCCCAGAATTCCTTTTTAGGTCACATATTCTAGCTCTCTGTCTACATAAACTGTTCTGCATTTGGCCCATACCATTACGGAATGGT",
"exons": [
{
"start": 0,
"end": 461
}
],
"species_id": "gallus_gallus",
"common": "chicken",
"color": "#c08030"
}
]
},
{
"symbol": "TP53",
"species": [
{
"ortholog_symbol": "TP53",
"ensembl_gene": "ENSG00000141510",
"ensembl_transcript": "ENST00000269305",
"chrom": "17",
"strand": -1,
"length": 1200,
"seq": "CTCAAAAGTCTAGAGCCACCGTCCAGGGAGCAGGTAGCTGCTGGGCTCCGGGGACACTTTGCGTTCGGGCTGGGAGCGTGCTTTCCACGACGGTGACACGCTTCCCTGGATTGGGTAAGCTCCTGACTGAACTTGATGAGTCCTCTCTGAGTCACGGGCTCTCGGCTCCGTGTATTTTCAGCTCGGGAAAATCGCTGGGGCTGGGGGTGGGGCAGTGGGGACTTAGCGAGTTTGGGGGTGAGTGGGATGGAAGCTTGGCTAGAGGGATCATCATAGGAGTTGCATTGTTGGGAGACCTGGGTGTAGATGATGGGGATGTTAGGACCATCCGAACTCAAAGTTGAACGCCTAGGCAGAGGAGTGGAGCTTTGGGGAACCTTGAGCCGGCCTAAAGCGTACTTCTTTGCACATCCACCCGGTGCTGGGCGTAGGGAATCCCTGAAATAAAAGATGCACAAAGCATTGAGGTCTGAGACTTTTGGATCTCGAAACATTGAGAACTCATAGCTGTATATTTTAGAGCCCATGGCATCCTAGTGAAAACTGGGGCTCCATTCCGAAATGATCATTTGGGGGTGATCCGGGGAGCCCAAGCTGCTAAGGTCCCACAACTTCCGGACCTTTGTCCTTCCTGGAGCGATCTTTCCAGGCAGCCCCCGGCTCCGCTAGATGGAGAAAATCCAATTGAAGGCTGTCAGTCGTGGAAGTGAGAAGTGCTAAACCAGGGGTTTGCCCGCCAGGCCGAGGAGGACCGTCGCAATCTGAGAGGCCCGGCAGCCCTGTTATTGTTTGGCTCCACATTTACATTTCTGCCTCTTGCAGCAGCATTTCCGGTTTCTTTTTGCCGGAGCAGCTCACTATTCACCCGATGAGAGGGGAGGAGAGAGAGAGAAAATGTCCTTTAGGCCGGTTCCTCTTACTTGGCAGAGGGAGGCTGCTATTCTCCGCCTGCATTTCTTTTTCTGGATTACTTAGTTATGGCCTTTGCAAAGGCAGGGGTATTTGTTTTGATGCAAACCTCAATCCCTCCCCTTCTTTGAATGGTGTGCCCCACCCCGCGGGTCGCCTGCAACCTAGGCGGACGCTACCATGGCGTGAGACAGGGAGGGAAAGAAGTGTGCAGAAGGCAAGCCCGGAGGTATTTTCAAGAATGAGTATATCTCATCTTCCCGGAGGAAAAAAAAAAAGAATGGGTACGTC",
"exons": [
{
"start": 0,
"end": 114
}
],
"species_id": "homo_sapiens",
"common": "human",
"color": "#1a1a1a"
},
{
"ortholog_symbol": "Trp53",
"ensembl_gene": "ENSMUSG00000059552",
"ensembl_transcript": "ENSMUST00000108658",
"chrom": "11",
"strand": 1,
"length": 1200,
"seq": "TTTCCCCTCCCACGTGCTCACCCTGGCTAAAGTTCTGTAGCTTCAGTTCATTGGGACCATCCTGGCTGTAGGTAGCGACTACAGTTAGGGGGCACCTAGCATTCAGGCCCTCATCCTCCTCCTTCCCAGCAGGGTGTCACGCTTCTCCGAAGACTGGGTAAGTAATTGATGAGCGTGACGAGACCTCTCGGTCACTGGCTCTCTCCGTTTGCATCCATAAAACTAGAGAAAACCGTGGGGTTTGGGGGTGGGGCAGTGGGGGGACTCAGCGCGATGGAGATGGGCGGAATGGAAGCTTGGCGGGCGGGATGAACGGGAGTGTATATGTCAGATGCTGTAGTGAGGGTAGCTGATGATGATGATGTTAGGACCGACGAGCCTCACTGTCATGCACCTGCAAAGTAGAGCATATAGGGACCACTGAGATGGCCTAAGGGGTTTTCTCTCCGCTACGCGTTGTACACACTTATCTGCCCGCTGCTAGGTGATGGAAGCTCCGGAAATAACATGCACAAAGCACCAGGATTTAAGATTTTTCGAGATTCATAGCTTAAGACTTAAGACCCCCCATAGCATCCTAATGAAACCCTGGGTTCCGTTCCTGGATGAGATCGGGGTGATCCGGGGAGCCTTAGCTGCTAAGGTCCCGCAACTTCCGGACCTTTGTCCCTGGAGTGATTTCTTTTTTTTTCCAGCCGCTTCTCGACCCTGCTAGATGAAGAAAATCCAAGAAAAGCCTGAAGCACTAGCGGTGCTAGCCAGAAGTATTTGCCCTCGGGGCCCGACTCAGCCTCTTGGTCTGAAAGGCCCGCCGGCCCTGTTATTGTTTGGCTCCTTTACGTTTCTGCCGCTTGCAGGAGCATTTCCGGTTTCTTGTTTTCGGAGCAGATCACTGCTCGCCCGGCGACGGGGGAGTAGCGAAAGGGGAGAAATGGATTCTAGGCTGGTTCTGTGGTTTGAGGAGGAAAACTGCTGTCCTCGACATCTTATTTTTCTGGATTACTTGGTTATTGCTTTTGCAAAGGAGGAGGTGTTTATTTAAAAGAGTGCGCCGATAGGTCGTTTCTTCCTGCCGGAAAAGCAAATTACCGAGTATCCGGTTTTAGGGTGAGCCATTCCCTTGCTTAACGCATTCCGCGCGTCCTGAAAGCGGAAGGGGCGGGCTTGGGCCCCGGGCGCCCGGCGGTCCTAAGTGCAGTC",
"exons": [
{
"start": 0,
"end": 157
}
],
"species_id": "mus_musculus",
"common": "mouse",
"color": "#2c5aa0"
},
{
"ortholog_symbol": "TP53",
"ensembl_gene": "ENSGALG00010000434",
"ensembl_transcript": "ENSGALT00010000901",
"chrom": "JAENSK010000588.1",
"strand": 1,
"length": 1200,
"seq": "GGCCTGGCCCCCGCACAGCACCTCATCCGGGTGGAGGGGAACCCCCAGGCGCGTTACCACGACGACGAGACCACCAAACGGCCACAGCGTCGTCGTCCCCTATGAGCCCCCCGAGGTACCCCCAAATCACACCCCCCCCATAACCCCCCCCCCCAGACCCCCCTAAAGACCCCCCCAACCCCAATTCCCCCCCCAAGACCCCATAACCTCCCATTGCCATGACCCCCAATCCCCCCCCCATGACCCCATAACCCCTCAATGACCCCCCCCAATGACCCCCCCAATGCCCCCAGCCCCAACCCCCCCCCCCAGTCCCCCCTAAAGACCCCCCCAACCCCAAGACCCCCCACGACCCCATAAGATCCCAATGCCGTGACCCCCCAATCCCCCCCCATGACCCCATAACCCCTCAATGACCCCCCCCAATGACCCCAACCCCAAAATACCCCCCCAGACCCCCCTAAAGACCCCCCCAACCCCAATTCCCCCCCCACGACCCCATAACCTCCCATTGCCATGACCCCCAATCCCCCCCCATGACCCTATAACCCCTCAATGACCCCCCCCCAATGACCCCCAACCCCAAAATACCCCCCCAGACCCCCCCTACAGACCCCCACAACCCCAAGACCCCCCCCCACGAACCCATAACTTCCCAATGCTGTGACCCCCAATCCCCCCCCATGACCCCATAACCCCCCAATGAACCCCAACAGCCCAATGACCCCCAGCCCCAAACCCCCCCCCCAGTCCCCTTTAAGGACCCCCCCCCAACCCCAATTCCCCCCCCACGACCCCATAACCTCCCATTGCCATGACCCCCCATCCCCCCTCATGACCCCATAACCCCTCAATGACCCCCCCCCAATGACCCCCAACCCCAAAATACCCCCCAGACCCCCCTAAAGACCCCCCCAACCCCAAGACCCCCCCCACGACCCCATAACTTCCCAATGCTGTGACCCCCAATCCCCCCCCCATGACCCCATAACCCTTCACTGACCCCCCCCAATGACCCCCAGCCCCAAACCCCCCCCAGTCCCCCTTAAGGACCCCCCCCCCACCCCATAACCCCTCAATGACACCCCCCCCCAATGACCCCCAACCCCAAAATGCCCCCCCTCAGTCCCCCCTAAAGACCCCCCCAACCCCAAGACCCCCCCCCACGACCCCATAACCTCCCATTGCCGTGACCCCCAA",
"exons": [
{
"start": 0,
"end": 81
},
{
"start": 82,
"end": 115
}
],
"species_id": "gallus_gallus",
"common": "chicken",
"color": "#c08030"
}
]
}
]