lvwerra HF Staff commited on
Commit
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1 Parent(s): d14ce6d

Initial demo: streaming DNA continuation with logprob coloring

Browse files
Files changed (5) hide show
  1. Dockerfile +13 -0
  2. README.md +21 -5
  3. app.py +87 -0
  4. index.html +636 -0
  5. requirements.txt +4 -0
Dockerfile ADDED
@@ -0,0 +1,13 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ FROM python:3.11-slim
2
+
3
+ WORKDIR /app
4
+
5
+ COPY requirements.txt .
6
+ RUN pip install --no-cache-dir -r requirements.txt
7
+
8
+ COPY app.py index.html ./
9
+
10
+ ENV PORT=7860
11
+ EXPOSE 7860
12
+
13
+ CMD ["uvicorn", "app:app", "--host", "0.0.0.0", "--port", "7860"]
README.md CHANGED
@@ -1,10 +1,26 @@
1
  ---
2
- title: Carbon Demo
3
- emoji: 📚
4
- colorFrom: green
5
- colorTo: gray
6
  sdk: docker
 
7
  pinned: false
8
  ---
9
 
10
- Check out the configuration reference at https://huggingface.co/docs/hub/spaces-config-reference
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
  ---
2
+ title: Carbon DNA Continuation
3
+ emoji: 🧬
4
+ colorFrom: gray
5
+ colorTo: indigo
6
  sdk: docker
7
+ app_port: 7860
8
  pinned: false
9
  ---
10
 
11
+ # Carbon · DNA Continuation
12
+
13
+ A streaming demo for the `hf-carbon/carbon-3B-hybrid-loss-1T-mix2-v1` model. Enter a DNA sequence prefix and watch the model continue it.
14
+
15
+ ## Local
16
+
17
+ ```bash
18
+ pip install -r requirements.txt
19
+ uvicorn app:app --reload --port 7860
20
+ ```
21
+
22
+ Auth uses the locally cached HF token (`huggingface-cli login`). Override the endpoint with `ENDPOINT_URL` and the model with `MODEL_NAME`.
23
+
24
+ ## Spaces
25
+
26
+ Deploy as a Docker Space. Set `HF_TOKEN` as a secret (the inference endpoint requires a token authorized for it).
app.py ADDED
@@ -0,0 +1,87 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ import json
2
+ import os
3
+
4
+ from fastapi import FastAPI, Request
5
+ from fastapi.responses import FileResponse, StreamingResponse
6
+ from openai import OpenAI
7
+
8
+ ENDPOINT_URL = os.environ.get(
9
+ "ENDPOINT_URL",
10
+ "https://z7nx05gfuixijytx.us-east-1.aws.endpoints.huggingface.cloud/v1/",
11
+ )
12
+ MODEL_NAME = os.environ.get(
13
+ "MODEL_NAME",
14
+ "hf-carbon/carbon-3B-hybrid-loss-1T-mix2-v1",
15
+ )
16
+
17
+ HERE = os.path.dirname(os.path.abspath(__file__))
18
+
19
+
20
+ def get_api_key():
21
+ key = os.environ.get("HF_TOKEN")
22
+ if key:
23
+ return key
24
+ try:
25
+ from huggingface_hub import get_token
26
+ return get_token()
27
+ except Exception:
28
+ return None
29
+
30
+
31
+ app = FastAPI()
32
+
33
+
34
+ @app.get("/")
35
+ def root():
36
+ return FileResponse(os.path.join(HERE, "index.html"))
37
+
38
+
39
+ @app.get("/config")
40
+ def config():
41
+ return {"model": MODEL_NAME, "endpoint": ENDPOINT_URL}
42
+
43
+
44
+ @app.post("/generate")
45
+ async def generate(request: Request):
46
+ body = await request.json()
47
+ prompt = (body.get("prompt") or "").strip().upper()
48
+ max_tokens = int(body.get("max_tokens", 128))
49
+ temperature = float(body.get("temperature", 1.0))
50
+ top_p = float(body.get("top_p", 1.0))
51
+
52
+ api_key = get_api_key()
53
+ if not api_key:
54
+ return {"error": "no HF token available — set HF_TOKEN env var or run `huggingface-cli login`"}
55
+
56
+ full_prompt = "<dna>" + prompt
57
+
58
+ def stream():
59
+ try:
60
+ client = OpenAI(base_url=ENDPOINT_URL, api_key=api_key)
61
+ completion = client.completions.create(
62
+ model=MODEL_NAME,
63
+ prompt=full_prompt,
64
+ stream=True,
65
+ max_tokens=max_tokens,
66
+ temperature=temperature,
67
+ top_p=top_p,
68
+ logprobs=5,
69
+ )
70
+ for chunk in completion:
71
+ ch = chunk.choices[0]
72
+ payload = {}
73
+ if ch.text:
74
+ payload["text"] = ch.text
75
+ if ch.logprobs and ch.logprobs.tokens:
76
+ payload["logprobs"] = {
77
+ "tokens": ch.logprobs.tokens,
78
+ "token_logprobs": ch.logprobs.token_logprobs,
79
+ "top_logprobs": ch.logprobs.top_logprobs,
80
+ }
81
+ if payload:
82
+ yield f"data: {json.dumps(payload)}\n\n"
83
+ yield f"data: {json.dumps({'done': True})}\n\n"
84
+ except Exception as e:
85
+ yield f"data: {json.dumps({'error': str(e)})}\n\n"
86
+
87
+ return StreamingResponse(stream(), media_type="text/event-stream")
index.html ADDED
@@ -0,0 +1,636 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ <!DOCTYPE html>
2
+ <html lang="en">
3
+ <head>
4
+ <meta charset="utf-8">
5
+ <meta name="viewport" content="width=device-width, initial-scale=1.0">
6
+ <title>Carbon · DNA Continuation</title>
7
+ <style>
8
+ @import url('https://fonts.googleapis.com/css2?family=JetBrains+Mono:wght@300;400;500;600&family=Inter:wght@300;400;500;600&display=swap');
9
+ * { margin: 0; padding: 0; box-sizing: border-box; }
10
+ body {
11
+ font-family: "Inter", "Helvetica Neue", sans-serif;
12
+ font-size: 12px; font-weight: 300; line-height: 1.6;
13
+ color: #1a1a1a; background: #fafafa;
14
+ padding: 24px 32px;
15
+ max-width: 1280px; margin: 0 auto;
16
+ }
17
+
18
+ h1 {
19
+ font-family: "JetBrains Mono", monospace;
20
+ font-size: 16px; font-weight: 400; letter-spacing: 2px;
21
+ }
22
+ .meta {
23
+ font-family: "JetBrains Mono", monospace;
24
+ color: #888; font-size: 10px; font-weight: 300;
25
+ letter-spacing: 0.5px; margin-top: 4px;
26
+ }
27
+ .header-row {
28
+ margin-bottom: 20px; padding-bottom: 12px; border-bottom: 1px solid #ddd;
29
+ }
30
+
31
+ .section-title {
32
+ font-family: "JetBrains Mono", monospace;
33
+ font-size: 11px; font-weight: 400;
34
+ text-transform: uppercase; letter-spacing: 2px; color: #444;
35
+ margin-top: 24px; margin-bottom: 8px;
36
+ border-bottom: 1px solid #ccc; padding-bottom: 4px;
37
+ }
38
+
39
+ /* --- Examples --- */
40
+ .examples {
41
+ display: flex; gap: 6px; flex-wrap: wrap; margin-bottom: 6px;
42
+ align-items: center;
43
+ }
44
+ .examples-label {
45
+ font-family: "JetBrains Mono", monospace;
46
+ font-size: 10px; color: #999; text-transform: uppercase; letter-spacing: 1px;
47
+ margin-right: 4px;
48
+ }
49
+ .ex-btn {
50
+ font-family: "JetBrains Mono", monospace;
51
+ font-size: 10px; padding: 3px 8px;
52
+ border: 1px solid #ddd; border-radius: 3px;
53
+ background: #fff; color: #666; cursor: pointer;
54
+ transition: all 0.15s;
55
+ }
56
+ .ex-btn:hover { border-color: #888; color: #1a1a1a; }
57
+ .ex-btn .ex-label {
58
+ color: #aaa; font-size: 9px; margin-left: 6px; text-transform: uppercase;
59
+ letter-spacing: 0.5px;
60
+ }
61
+
62
+ /* --- Inputs --- */
63
+ textarea, input[type=number] {
64
+ font-family: "JetBrains Mono", monospace;
65
+ font-size: 12px; font-weight: 300; color: #1a1a1a;
66
+ background: #fff; border: 1px solid #ddd; border-radius: 3px;
67
+ padding: 8px 12px; outline: none; transition: border 0.15s;
68
+ }
69
+ textarea:focus, input[type=number]:focus { border-color: #1a1a1a; }
70
+ textarea {
71
+ width: 100%; resize: none; overflow: hidden;
72
+ letter-spacing: 1px; line-height: 1.7;
73
+ min-height: 36px;
74
+ }
75
+
76
+ .controls {
77
+ display: flex; align-items: center; gap: 16px; flex-wrap: wrap;
78
+ margin-top: 10px;
79
+ }
80
+ .control {
81
+ display: flex; align-items: center; gap: 6px;
82
+ font-family: "JetBrains Mono", monospace; font-size: 10px; color: #666;
83
+ text-transform: uppercase; letter-spacing: 1px;
84
+ }
85
+ .control input[type=number] {
86
+ width: 64px; padding: 4px 6px; font-size: 11px; text-align: right;
87
+ }
88
+
89
+ /* Color mode toggle */
90
+ .mode-group {
91
+ display: flex; align-items: center; gap: 6px;
92
+ font-family: "JetBrains Mono", monospace; font-size: 10px; color: #666;
93
+ text-transform: uppercase; letter-spacing: 1px;
94
+ }
95
+ .mode-btns { display: flex; }
96
+ .mode-btn {
97
+ font-family: "JetBrains Mono", monospace;
98
+ font-size: 10px; padding: 4px 9px;
99
+ border: 1px solid #ccc; border-right: none;
100
+ background: #fff; color: #666; cursor: pointer;
101
+ text-transform: uppercase; letter-spacing: 1px;
102
+ transition: all 0.15s;
103
+ }
104
+ .mode-btn:first-child { border-radius: 3px 0 0 3px; }
105
+ .mode-btn:last-child { border-right: 1px solid #ccc; border-radius: 0 3px 3px 0; }
106
+ .mode-btn:hover { color: #1a1a1a; }
107
+ .mode-btn.active { background: #1a1a1a; color: #fff; border-color: #1a1a1a; }
108
+
109
+ button.action {
110
+ font-family: "JetBrains Mono", monospace;
111
+ font-size: 10px; font-weight: 400;
112
+ padding: 5px 12px; border: 1px solid #ccc; border-radius: 3px;
113
+ background: #fff; color: #555; cursor: pointer;
114
+ text-transform: uppercase; letter-spacing: 1.5px;
115
+ transition: all 0.15s;
116
+ }
117
+ button.action:hover { border-color: #888; color: #1a1a1a; }
118
+ button.action.primary { background: #1a1a1a; color: #fff; border-color: #1a1a1a; }
119
+ button.action.primary:hover { background: #000; }
120
+ button.action:disabled { opacity: 0.4; cursor: not-allowed; }
121
+ button.action.primary:disabled { background: #888; border-color: #888; }
122
+
123
+ .button-row { margin-left: auto; display: flex; gap: 6px; }
124
+
125
+ /* --- Status --- */
126
+ .status {
127
+ font-family: "JetBrains Mono", monospace;
128
+ font-size: 10px; color: #666;
129
+ text-transform: uppercase; letter-spacing: 1.5px;
130
+ margin-top: 10px; min-height: 14px;
131
+ }
132
+ .status.error { color: #b00020; text-transform: none; letter-spacing: 0.3px; }
133
+ .status .dot {
134
+ display: inline-block; width: 6px; height: 6px; border-radius: 50%;
135
+ background: #888; margin-right: 6px; vertical-align: middle;
136
+ }
137
+ .status.streaming .dot { background: #1a8a3a; animation: pulse 1.2s ease-in-out infinite; }
138
+ @keyframes pulse { 50% { opacity: 0.3; } }
139
+
140
+ /* --- Output layout: sequence + sticky stats sidebar --- */
141
+ .output-row {
142
+ display: grid;
143
+ grid-template-columns: minmax(0, 1fr) 200px;
144
+ gap: 16px;
145
+ align-items: start;
146
+ }
147
+
148
+ .seq-block {
149
+ font-family: "JetBrains Mono", monospace;
150
+ background: #f4f4f4; border: 1px solid #ddd;
151
+ padding: 16px 20px; overflow-x: auto;
152
+ white-space: pre; font-size: 12px; font-weight: 400;
153
+ line-height: 1.85; letter-spacing: 1.5px;
154
+ min-height: 80px;
155
+ }
156
+ .seq-block.empty { color: #aaa; font-weight: 300; letter-spacing: normal; }
157
+ .seq-line { white-space: pre; }
158
+ .pos { color: #bbb; user-select: none; font-weight: 300; }
159
+ .cursor {
160
+ display: inline-block; width: 7px; height: 14px;
161
+ background: #1a1a1a; vertical-align: text-bottom;
162
+ margin-left: 2px;
163
+ animation: blink 1s step-end infinite;
164
+ }
165
+ @keyframes blink { 50% { opacity: 0; } }
166
+
167
+ /* Token-block hover (for logprob/bases mode tooltips later) */
168
+ .tok { transition: background 0.1s; }
169
+ .tok:hover { background: #e8e8e8; }
170
+
171
+ /* --- Stats sidebar --- */
172
+ .stats {
173
+ position: sticky; top: 16px;
174
+ border: 1px solid #ddd; background: #fff;
175
+ }
176
+ .stat {
177
+ display: flex; justify-content: space-between; align-items: baseline;
178
+ padding: 8px 12px;
179
+ border-bottom: 1px solid #eee;
180
+ font-family: "JetBrains Mono", monospace;
181
+ }
182
+ .stat:last-child { border-bottom: none; }
183
+ .stat-label {
184
+ font-size: 9px; color: #999;
185
+ text-transform: uppercase; letter-spacing: 1.2px; font-weight: 300;
186
+ }
187
+ .stat-value {
188
+ font-size: 12px; font-weight: 400; color: #1a1a1a;
189
+ font-variant-numeric: tabular-nums;
190
+ }
191
+ .stat-value .unit { font-size: 9px; color: #999; margin-left: 3px; font-weight: 300; }
192
+
193
+ /* Logprob legend (only shown in logprob mode) */
194
+ .legend {
195
+ margin-top: 8px;
196
+ padding: 8px 12px;
197
+ background: #fff; border: 1px solid #ddd;
198
+ font-family: "JetBrains Mono", monospace;
199
+ font-size: 9px; color: #888;
200
+ text-transform: uppercase; letter-spacing: 1px;
201
+ display: none;
202
+ }
203
+ .legend.show { display: block; }
204
+ .legend-bar {
205
+ height: 6px; margin: 4px 0 3px;
206
+ background: linear-gradient(to right, #d83a2a, #888, #1a1a1a);
207
+ border-radius: 1px;
208
+ }
209
+ .legend-row { display: flex; justify-content: space-between; }
210
+
211
+ ::-webkit-scrollbar { width: 8px; height: 8px; }
212
+ ::-webkit-scrollbar-thumb { background: #ccc; border-radius: 4px; }
213
+ ::-webkit-scrollbar-track { background: transparent; }
214
+ </style>
215
+ </head>
216
+ <body>
217
+
218
+ <div class="header-row">
219
+ <h1>CARBON · DNA CONTINUATION</h1>
220
+ <div class="meta" id="meta">loading…</div>
221
+ </div>
222
+
223
+ <div class="section-title">Prompt</div>
224
+
225
+ <div class="examples">
226
+ <span class="examples-label">examples</span>
227
+ <button class="ex-btn" data-ex="">empty<span class="ex-label">unconditional</span></button>
228
+ <button class="ex-btn" data-ex="ATG">ATG<span class="ex-label">start codon</span></button>
229
+ <button class="ex-btn" data-ex="TATAAA">TATAAA<span class="ex-label">TATA box</span></button>
230
+ <button class="ex-btn" data-ex="CGCGCGCGCG">CGCG…<span class="ex-label">CpG island</span></button>
231
+ <button class="ex-btn" data-ex="ATGGCCAAGCTGACCAGCGAGCTGCTG">ATGGCC…<span class="ex-label">ORF start</span></button>
232
+ <button class="ex-btn" data-ex="AAAAAAAAAAAAAAAA">A·16<span class="ex-label">poly-A</span></button>
233
+ </div>
234
+
235
+ <textarea id="prompt" rows="1" spellcheck="false" autocapitalize="characters">AGT</textarea>
236
+
237
+ <div class="controls">
238
+ <label class="control">max tokens
239
+ <input type="number" id="max_tokens" value="128" min="1" max="2048" step="1">
240
+ </label>
241
+ <label class="control">temperature
242
+ <input type="number" id="temperature" value="1.0" min="0" max="2" step="0.1">
243
+ </label>
244
+ <label class="control">top-p
245
+ <input type="number" id="top_p" value="1.0" min="0" max="1" step="0.05">
246
+ </label>
247
+
248
+ <div class="mode-group">color
249
+ <div class="mode-btns" id="mode-btns">
250
+ <button class="mode-btn active" data-mode="none">none</button>
251
+ <button class="mode-btn" data-mode="bases">bases</button>
252
+ <button class="mode-btn" data-mode="logprob">logprob</button>
253
+ </div>
254
+ </div>
255
+
256
+ <div class="button-row">
257
+ <button id="clear-btn" class="action">clear</button>
258
+ <button id="stop-btn" class="action" disabled>stop</button>
259
+ <button id="generate-btn" class="action primary">generate</button>
260
+ </div>
261
+ </div>
262
+
263
+ <div class="status" id="status"><span class="dot"></span><span id="status-text">idle</span></div>
264
+
265
+ <div class="section-title">Sequence</div>
266
+
267
+ <div class="output-row">
268
+ <div>
269
+ <div class="seq-block empty" id="seq">prompt + generated bases will stream here</div>
270
+ </div>
271
+
272
+ <div>
273
+ <div class="stats" id="stats">
274
+ <div class="stat"><span class="stat-label">prompt</span><span class="stat-value" id="stat-prompt">0<span class="unit">bp</span></span></div>
275
+ <div class="stat"><span class="stat-label">generated</span><span class="stat-value" id="stat-gen">0<span class="unit">bp</span></span></div>
276
+ <div class="stat"><span class="stat-label">tokens</span><span class="stat-value" id="stat-tok">0</span></div>
277
+ <div class="stat"><span class="stat-label">elapsed</span><span class="stat-value" id="stat-time">0.0<span class="unit">s</span></span></div>
278
+ <div class="stat"><span class="stat-label">throughput</span><span class="stat-value" id="stat-rate">0<span class="unit">bp/s</span></span></div>
279
+ <div class="stat"><span class="stat-label">GC content</span><span class="stat-value" id="stat-gc">—</span></div>
280
+ <div class="stat"><span class="stat-label">mean logprob</span><span class="stat-value" id="stat-lp">—</span></div>
281
+ <div class="stat"><span class="stat-label">perplexity</span><span class="stat-value" id="stat-ppl">—</span></div>
282
+ </div>
283
+ <div class="legend" id="legend">
284
+ <div>token logprob</div>
285
+ <div class="legend-bar" id="legend-bar"></div>
286
+ <div class="legend-row"><span id="lp-min">—</span><span id="lp-mid">—</span><span id="lp-max">—</span></div>
287
+ </div>
288
+ </div>
289
+ </div>
290
+
291
+ <script>
292
+ const els = {
293
+ prompt: document.getElementById("prompt"),
294
+ maxTokens: document.getElementById("max_tokens"),
295
+ temperature: document.getElementById("temperature"),
296
+ topP: document.getElementById("top_p"),
297
+ generate: document.getElementById("generate-btn"),
298
+ stop: document.getElementById("stop-btn"),
299
+ clear: document.getElementById("clear-btn"),
300
+ modeBtns: document.getElementById("mode-btns"),
301
+ seq: document.getElementById("seq"),
302
+ meta: document.getElementById("meta"),
303
+ status: document.getElementById("status"),
304
+ statusText: document.getElementById("status-text"),
305
+ legend: document.getElementById("legend"),
306
+ statPrompt: document.getElementById("stat-prompt"),
307
+ statGen: document.getElementById("stat-gen"),
308
+ statTok: document.getElementById("stat-tok"),
309
+ statTime: document.getElementById("stat-time"),
310
+ statRate: document.getElementById("stat-rate"),
311
+ statGc: document.getElementById("stat-gc"),
312
+ statLp: document.getElementById("stat-lp"),
313
+ statPpl: document.getElementById("stat-ppl"),
314
+ };
315
+
316
+ let promptBases = "";
317
+ let genText = "";
318
+ let genTokens = []; // [{text, logprob, top}]
319
+ let genTokenAtBase = []; // genTokenAtBase[i] = token index for generated base i
320
+ let abortCtrl = null;
321
+ let startTime = 0;
322
+ let timer = null;
323
+ let colorMode = "none";
324
+
325
+ // --- Color schemes (RGB tuples, used for both fg color and faint bg tint) ---
326
+ const BASE_RGB = {
327
+ A: [58, 138, 62],
328
+ C: [46, 107, 184],
329
+ G: [181, 137, 30],
330
+ T: [181, 58, 58],
331
+ N: [136, 136, 136],
332
+ };
333
+ const PROMPT_RGB = [170, 170, 170];
334
+ const DARK_RGB = [26, 26, 26];
335
+ const MID_RGB = [136, 136, 136];
336
+ const RED_RGB = [216, 58, 42];
337
+ const BG_ALPHA = 0.12;
338
+
339
+ // Logprob gradient: dynamically scaled to observed min/mean/max.
340
+ // Most confident (max) → DARK_RGB, mean → MID_RGB, most uncertain (min) → RED_RGB
341
+ let lpRange = null; // {min, mid, max} or null
342
+ function lerp(a, b, t) { return Math.round(a + (b - a) * t); }
343
+ function lerpRgb(c1, c2, t) {
344
+ return [lerp(c1[0], c2[0], t), lerp(c1[1], c2[1], t), lerp(c1[2], c2[2], t)];
345
+ }
346
+ function recomputeLpRange() {
347
+ if (!genTokens.length) { lpRange = null; updateLegend(); return; }
348
+ let min = Infinity, max = -Infinity, sum = 0, n = 0;
349
+ for (const t of genTokens) {
350
+ if (t.logprob == null || isNaN(t.logprob)) continue;
351
+ if (t.logprob < min) min = t.logprob;
352
+ if (t.logprob > max) max = t.logprob;
353
+ sum += t.logprob; n++;
354
+ }
355
+ lpRange = n ? { min, mid: sum / n, max } : null;
356
+ updateLegend();
357
+ }
358
+ function updateLegend() {
359
+ const minEl = document.getElementById("lp-min");
360
+ const midEl = document.getElementById("lp-mid");
361
+ const maxEl = document.getElementById("lp-max");
362
+ const bar = document.getElementById("legend-bar");
363
+ if (!lpRange) {
364
+ minEl.textContent = midEl.textContent = maxEl.textContent = "—";
365
+ bar.style.background = "linear-gradient(to right, #d83a2a, #888, #1a1a1a)";
366
+ return;
367
+ }
368
+ const { min, mid, max } = lpRange;
369
+ minEl.textContent = min.toFixed(1);
370
+ midEl.textContent = mid.toFixed(1);
371
+ maxEl.textContent = max.toFixed(1);
372
+ const midPct = max > min ? ((mid - min) / (max - min)) * 100 : 50;
373
+ bar.style.background = `linear-gradient(to right, #d83a2a 0%, #888 ${midPct.toFixed(1)}%, #1a1a1a 100%)`;
374
+ }
375
+ function logprobRgb(lp) {
376
+ if (lp == null || isNaN(lp) || !lpRange) return DARK_RGB;
377
+ const { min, mid, max } = lpRange;
378
+ if (max === min) return MID_RGB;
379
+ if (lp >= mid) {
380
+ const denom = max - mid;
381
+ const t = denom > 0 ? Math.min(1, Math.max(0, (max - lp) / denom)) : 0;
382
+ return lerpRgb(DARK_RGB, MID_RGB, t);
383
+ }
384
+ const denom = mid - min;
385
+ const t = denom > 0 ? Math.min(1, Math.max(0, (mid - lp) / denom)) : 0;
386
+ return lerpRgb(MID_RGB, RED_RGB, t);
387
+ }
388
+
389
+ // --- Init ---
390
+ async function init() {
391
+ try {
392
+ const resp = await fetch("/config");
393
+ const cfg = await resp.json();
394
+ els.meta.textContent = `${cfg.model} · ${cfg.endpoint}`;
395
+ } catch {
396
+ els.meta.textContent = "config unavailable";
397
+ }
398
+ }
399
+
400
+ // --- Auto-grow textarea ---
401
+ function autoGrow() {
402
+ els.prompt.style.height = "auto";
403
+ els.prompt.style.height = els.prompt.scrollHeight + "px";
404
+ }
405
+ els.prompt.addEventListener("input", () => {
406
+ const cleaned = cleanPrompt(els.prompt.value);
407
+ if (cleaned !== els.prompt.value) {
408
+ const pos = els.prompt.selectionStart;
409
+ els.prompt.value = cleaned;
410
+ els.prompt.setSelectionRange(pos, pos);
411
+ }
412
+ autoGrow();
413
+ });
414
+ window.addEventListener("load", autoGrow);
415
+
416
+ // --- Prompt validation ---
417
+ function cleanPrompt(s) {
418
+ return s.toUpperCase().replace(/[^ACGTN]/g, "");
419
+ }
420
+
421
+ // --- Sequence rendering ---
422
+ function rgbForBase(absIdx, base) {
423
+ // absIdx: 0-indexed position in prompt+gen string
424
+ if (absIdx < promptBases.length) return PROMPT_RGB;
425
+ if (colorMode === "bases") return BASE_RGB[base] || DARK_RGB;
426
+ if (colorMode === "logprob") {
427
+ const genIdx = absIdx - promptBases.length;
428
+ const tok = genTokens[genTokenAtBase[genIdx]];
429
+ return tok ? logprobRgb(tok.logprob) : DARK_RGB;
430
+ }
431
+ return DARK_RGB;
432
+ }
433
+
434
+ function renderSequence() {
435
+ if (colorMode === "logprob") recomputeLpRange();
436
+ const total = promptBases + genText;
437
+ if (!total) {
438
+ els.seq.classList.add("empty");
439
+ els.seq.textContent = "prompt + generated bases will stream here";
440
+ return;
441
+ }
442
+ els.seq.classList.remove("empty");
443
+
444
+ const lines = [];
445
+ for (let i = 0; i < total.length; i += 60) {
446
+ const lineBases = total.slice(i, i + 60);
447
+ const pos = String(i + 1).padStart(5, " ");
448
+ let html = `<span class="pos">${pos}</span> `;
449
+ for (let j = 0; j < lineBases.length; j++) {
450
+ if (j > 0 && j % 10 === 0) html += " ";
451
+ const absIdx = i + j;
452
+ const base = lineBases[j];
453
+ const [r, g, b] = rgbForBase(absIdx, base);
454
+ const tinted = colorMode !== "none" && absIdx >= promptBases.length;
455
+ const bg = tinted ? `;background:rgba(${r},${g},${b},${BG_ALPHA})` : "";
456
+ html += `<span style="color:rgb(${r},${g},${b})${bg}">${base}</span>`;
457
+ }
458
+ if (abortCtrl && i + lineBases.length === total.length) {
459
+ html += `<span class="cursor"></span>`;
460
+ }
461
+ lines.push(`<div class="seq-line">${html}</div>`);
462
+ }
463
+ els.seq.innerHTML = lines.join("");
464
+ }
465
+
466
+ // --- Stats ---
467
+ function gcContent(s) {
468
+ if (!s) return null;
469
+ let gc = 0;
470
+ for (const c of s) if (c === "G" || c === "C") gc++;
471
+ return (gc / s.length) * 100;
472
+ }
473
+
474
+ function meanLogprob() {
475
+ if (!genTokens.length) return null;
476
+ let sum = 0, n = 0;
477
+ for (const t of genTokens) {
478
+ if (t.logprob != null && !isNaN(t.logprob)) { sum += t.logprob; n++; }
479
+ }
480
+ return n ? sum / n : null;
481
+ }
482
+
483
+ function updateStats() {
484
+ els.statPrompt.innerHTML = `${promptBases.length}<span class="unit">bp</span>`;
485
+ els.statGen.innerHTML = `${genText.length}<span class="unit">bp</span>`;
486
+ els.statTok.textContent = genTokens.length;
487
+ const elapsed = startTime ? (performance.now() - startTime) / 1000 : 0;
488
+ els.statTime.innerHTML = `${elapsed.toFixed(1)}<span class="unit">s</span>`;
489
+ const rate = elapsed > 0 ? Math.round(genText.length / elapsed) : 0;
490
+ els.statRate.innerHTML = `${rate}<span class="unit">bp/s</span>`;
491
+ const gc = gcContent(genText);
492
+ els.statGc.textContent = gc == null ? "—" : `${gc.toFixed(1)}%`;
493
+ const mlp = meanLogprob();
494
+ els.statLp.textContent = mlp == null ? "—" : mlp.toFixed(2);
495
+ els.statPpl.textContent = mlp == null ? "—" : Math.exp(-mlp).toFixed(1);
496
+ }
497
+
498
+ function setStatus(text, mode = "") {
499
+ els.statusText.textContent = text;
500
+ els.status.className = "status" + (mode ? " " + mode : "");
501
+ }
502
+
503
+ // --- Color mode toggle ---
504
+ els.modeBtns.querySelectorAll(".mode-btn").forEach(b => {
505
+ b.addEventListener("click", () => {
506
+ colorMode = b.dataset.mode;
507
+ els.modeBtns.querySelectorAll(".mode-btn").forEach(x => x.classList.toggle("active", x === b));
508
+ els.legend.classList.toggle("show", colorMode === "logprob");
509
+ renderSequence();
510
+ });
511
+ });
512
+
513
+ // --- Generation ---
514
+ async function generate() {
515
+ if (abortCtrl) return;
516
+
517
+ promptBases = cleanPrompt(els.prompt.value);
518
+ genText = "";
519
+ genTokens = [];
520
+ genTokenAtBase = [];
521
+ startTime = performance.now();
522
+ abortCtrl = new AbortController();
523
+
524
+ els.generate.disabled = true;
525
+ els.stop.disabled = false;
526
+ setStatus("connecting…", "streaming");
527
+ renderSequence();
528
+ updateStats();
529
+ timer = setInterval(updateStats, 100);
530
+
531
+ const body = {
532
+ prompt: promptBases,
533
+ max_tokens: parseInt(els.maxTokens.value),
534
+ temperature: parseFloat(els.temperature.value),
535
+ top_p: parseFloat(els.topP.value),
536
+ };
537
+
538
+ try {
539
+ const resp = await fetch("/generate", {
540
+ method: "POST",
541
+ headers: { "Content-Type": "application/json" },
542
+ body: JSON.stringify(body),
543
+ signal: abortCtrl.signal,
544
+ });
545
+
546
+ if (!resp.ok) {
547
+ throw new Error(`HTTP ${resp.status}: ${await resp.text()}`);
548
+ }
549
+
550
+ setStatus("streaming", "streaming");
551
+ const reader = resp.body.getReader();
552
+ const decoder = new TextDecoder();
553
+ let buffer = "";
554
+
555
+ while (true) {
556
+ const { done, value } = await reader.read();
557
+ if (done) break;
558
+ buffer += decoder.decode(value, { stream: true });
559
+ const events = buffer.split("\n\n");
560
+ buffer = events.pop();
561
+ for (const ev of events) {
562
+ const line = ev.trim();
563
+ if (!line.startsWith("data:")) continue;
564
+ const data = JSON.parse(line.slice(5).trim());
565
+ if (data.error) throw new Error(data.error);
566
+ if (data.done) continue;
567
+ if (data.logprobs) {
568
+ const lp = data.logprobs;
569
+ for (let i = 0; i < lp.tokens.length; i++) {
570
+ const tokIdx = genTokens.length;
571
+ genTokens.push({
572
+ text: lp.tokens[i],
573
+ logprob: lp.token_logprobs[i],
574
+ top: lp.top_logprobs[i],
575
+ });
576
+ for (let j = 0; j < lp.tokens[i].length; j++) genTokenAtBase.push(tokIdx);
577
+ }
578
+ }
579
+ if (data.text) {
580
+ genText += cleanPrompt(data.text);
581
+ renderSequence();
582
+ }
583
+ }
584
+ }
585
+ setStatus("done");
586
+ } catch (e) {
587
+ if (e.name === "AbortError") setStatus("stopped");
588
+ else setStatus(e.message, "error");
589
+ } finally {
590
+ abortCtrl = null;
591
+ clearInterval(timer);
592
+ updateStats();
593
+ renderSequence();
594
+ els.generate.disabled = false;
595
+ els.stop.disabled = true;
596
+ }
597
+ }
598
+
599
+ function stop() { if (abortCtrl) abortCtrl.abort(); }
600
+
601
+ function clearAll() {
602
+ if (abortCtrl) return;
603
+ promptBases = "";
604
+ genText = "";
605
+ genTokens = [];
606
+ genTokenAtBase = [];
607
+ startTime = 0;
608
+ renderSequence();
609
+ updateStats();
610
+ setStatus("idle");
611
+ }
612
+
613
+ els.generate.addEventListener("click", generate);
614
+ els.stop.addEventListener("click", stop);
615
+ els.clear.addEventListener("click", clearAll);
616
+
617
+ els.prompt.addEventListener("keydown", e => {
618
+ if ((e.metaKey || e.ctrlKey) && e.key === "Enter") {
619
+ e.preventDefault();
620
+ generate();
621
+ }
622
+ });
623
+
624
+ document.querySelectorAll(".ex-btn").forEach(btn => {
625
+ btn.addEventListener("click", () => {
626
+ els.prompt.value = btn.dataset.ex;
627
+ autoGrow();
628
+ els.prompt.focus();
629
+ });
630
+ });
631
+
632
+ init();
633
+ updateStats();
634
+ </script>
635
+ </body>
636
+ </html>
requirements.txt ADDED
@@ -0,0 +1,4 @@
 
 
 
 
 
1
+ fastapi>=0.110
2
+ uvicorn[standard]>=0.27
3
+ openai>=1.40
4
+ huggingface_hub>=0.24