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Runtime error
Kevin Louis
commited on
Commit
·
e6cc6ba
1
Parent(s):
1a17f8d
Update app.py
Browse filesUpdate app to include graphic response
app.py
CHANGED
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@@ -3,13 +3,17 @@ from huggingface_hub import CommitScheduler
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from datasets import Dataset
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import gradio as gr
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import pandas as pd
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import os
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from parameter_extractor import ParameterExtractor
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from DNAseq import DNAseq
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from helper import list_at_index_0, list_at_index_1
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from logger import cts_log_file_create, logger, cts_logger
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HF_TOKEN = os.environ.get("HF_TOKEN", None)
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# Create csv file for data logging
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@@ -29,7 +33,6 @@ scheduler = CommitScheduler(
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def chat_to_sequence(sequence, user_query):
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# Sequence to be analysed/queried
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input_sequence = sequence
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@@ -48,8 +51,11 @@ def chat_to_sequence(sequence, user_query):
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# Set ParameterExtractor class expected variable
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query = user_query
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#
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# Query Code Description Message
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code_descript_message = ''
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@@ -151,7 +157,13 @@ def chat_to_sequence(sequence, user_query):
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# Check if there is a match
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if not matching_row.empty:
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function = matching_row.iloc[0]["function"]
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code_descript_message = query_code_description.title()
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cts_logger(scheduler, log_file_path, log_data, response)
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else:
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@@ -160,8 +172,8 @@ def chat_to_sequence(sequence, user_query):
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cts_logger(scheduler, log_file_path, log_data, response)
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print("No matching code found for the function:", code)
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return response, code_descript_message
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return response, code_descript_message
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ChatToSequence = gr.Interface(
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@@ -184,6 +196,8 @@ ChatToSequence = gr.Interface(
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"What are the bases from position 2 to 10"],
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["ggcattgaggagaccattgacaccgtcattagcaatgcactacaactgtcacaacctaaa",
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"How many bases are there from position 2 to 10"],
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],
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).queue()
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from datasets import Dataset
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import gradio as gr
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import pandas as pd
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import plotly.graph_objects as go
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import os
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from DNAseq import DNAseq
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from grapher import DNAgrapher
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from parameter_extractor import ParameterExtractor
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from helper import list_at_index_0, list_at_index_1
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from logger import cts_log_file_create, logger, cts_logger
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HF_TOKEN = os.environ.get("HF_TOKEN", None)
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# Create csv file for data logging
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def chat_to_sequence(sequence, user_query):
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# Sequence to be analysed/queried
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input_sequence = sequence
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# Set ParameterExtractor class expected variable
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query = user_query
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# Initialise Graphic Response
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fig = None
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# Initialise Text Response
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response = None
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# Query Code Description Message
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code_descript_message = ''
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# Check if there is a match
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if not matching_row.empty:
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function = matching_row.iloc[0]["function"]
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f_response = eval(function)
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if code[0] == 'c':
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response = None
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fig = go.Figure(f_response)
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else:
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response = str(f_response)
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fig = None
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code_descript_message = query_code_description.title()
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cts_logger(scheduler, log_file_path, log_data, response)
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else:
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cts_logger(scheduler, log_file_path, log_data, response)
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print("No matching code found for the function:", code)
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return response, fig, code_descript_message
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return response, fig, code_descript_message
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ChatToSequence = gr.Interface(
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"What are the bases from position 2 to 10"],
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["ggcattgaggagaccattgacaccgtcattagcaatgcactacaactgtcacaacctaaa",
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"How many bases are there from position 2 to 10"],
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["ggcattgaggagaccattgacaccgtcattagcaatgcactacaactgtcacaacctaaa",
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"Show pie chart of total bases"],
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],
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).queue()
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