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Update org card: rebrand DeepYoke -> HydroSophy
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README.md
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# HydroSophy
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##
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## π Research Focus
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### 𧬠AI for Science
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- **Molecular Modeling & Drug Design** β Accelerating pharmaceutical research through intelligent molecular design and structure-level editing
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- **Structural Biology** β Understanding protein and small-molecule structures with AI
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- **Cheminformatics** β Bridging chemistry and computational intelligence
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- **Scientific Computing Acceleration** β Optimizing computational workflows for scientific discovery
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### π€ Multimodal Intelligence
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- **Multimodal Large Language Models** β Integrating vision, language and scientific reasoning
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- **VisionβLanguageβMolecule Understanding** β Joint reasoning over SMILES, 2D depictions and natural language
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- **Intelligent Scientific Literature Analysis** β Extracting structured insight from vast research corpora
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- **Cross-modal Knowledge Fusion** β Synthesizing information across heterogeneous scientific modalities
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### π Benchmark & Evaluation
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- **Scientific AI Benchmarking** β Establishing rigorous, reproducible evaluation standards for AI4Science
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- **Dataset Construction & Standardization** β Creating high-quality, expert-annotated, mechanism-aware datasets
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- **Evaluation Framework Development** β Building transparent, extensible assessment toolkits
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- **Open Science Ecosystem** β Fostering collaborative, reproducible research environments
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## π Featured Projects
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### π§ͺ ToxiMol Β· *KDD 2026 Oral*
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###
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- Mechanism-aware editing across broader therapeutic modalities
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- Open evaluation infrastructure for AI4Science
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**
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# HydroSophy
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## About
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We work on **AI for Science** β mostly molecular modeling, multimodal foundation models, and the benchmarks / datasets / evaluation tools that go with them.
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## Projects
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### π§ͺ ToxiMol Β· *KDD 2026 Oral*
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**Breaking Bad Molecules: Are MLLMs Ready for Structure-Level Molecular Detoxification?**
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A benchmark for molecular toxicity repair with MLLMs β 660 toxic molecules, 11 repair tasks, multimodal inputs (SMILES + 2D structures), plus the companion **ToxiEval** evaluation framework.
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π [Dataset](https://huggingface.co/datasets/HydroSophyTech/ToxiMol-benchmark) | π [Paper](https://arxiv.org/abs/2506.10912) | π¬ [Code](https://github.com/HydroSophy/ToxiMol)
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### π ToxiEval-ZKP Β· *IFAC BIKA Best Paper Award*
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**ToxiEval-ZKP: A Structure-Private Verification Framework for Molecular Toxicity Repair Tasks**
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A structure-private, verifiable evaluation framework for molecular toxicity repair built on zero-knowledge proofs.
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π [Paper](https://arxiv.org/abs/2508.12035) | π¬ [Code](https://github.com/HydroSophy/ToxiEval-ZKP) *(coming soon)*
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## Contact
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- **GitHub:** [@HydroSophy](https://github.com/HydroSophy)
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- **Email:** feilin@ieee.org
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- **Location:** Macau, China
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