import gradio as gr import torch import torch.nn.functional as F import pandas as pd import numpy as np import matplotlib.pyplot as plt import os import glob from huggingface_hub import hf_hub_download from labels_refined import get_refined_labels, CLASSES from model import ResNet1d from dataset import MIMICECGDataset # --- Configuration --- DATA_DIR = "./examples" CSV_PATH = "metadata.csv" DEVICE = torch.device("cpu") # --- Load Resources --- print("Downloading Model from Hub...") # Get token from Space Secrets (must be set as HF_TOKEN) hf_token = os.environ.get("HF_TOKEN") model_path = hf_hub_download( repo_id="IFMedTech/ECG_Model", filename="resnet_advanced.pth", token=hf_token ) print(f"Loading Model from {model_path}...") model = ResNet1d(num_classes=5).to(DEVICE) try: state_dict = torch.load(model_path, map_location=DEVICE, weights_only=True) except: state_dict = torch.load(model_path, map_location=DEVICE) model.load_state_dict(state_dict) model.eval() print("Loading Dataset Index...") # Use CSV to dynamically find info for available examples try: df = pd.read_csv(CSV_PATH, low_memory=False) print(f"Loaded CSV with {len(df)} records.") except Exception as e: print(f"Error loading CSV: {e}") df = pd.DataFrame() # Fallback # Scan examples folder for .dat files example_files = glob.glob(os.path.join(DATA_DIR, "*.dat")) available_study_ids = [os.path.splitext(os.path.basename(f))[0] for f in example_files] print(f"Found examples: {available_study_ids}") # Build Metadata for Gradio example_metadata = {} for sid in available_study_ids: if df.empty: example_metadata[sid] = {"diagnosis": "Unknown (CSV Missing)", "text": "N/A"} continue row = df[df['study_id'].astype(str) == str(sid)] if not row.empty: cols = [c for c in df.columns if 'report_' in c] lines = [str(row.iloc[0][c]).strip() for c in cols if pd.notna(row.iloc[0][c]) and str(row.iloc[0][c]).strip() != ''] full_text = '\n'.join(lines) # Simple diagnosis estimation from labels for display title labels_vec = get_refined_labels(' '.join(lines)) active_classes = [CLASSES[i] for i, val in enumerate(labels_vec) if val == 1.0] diagnosis = ", ".join(active_classes) if active_classes else "Normal/Other" example_metadata[sid] = { "diagnosis": diagnosis, "text": full_text } else: example_metadata[sid] = {"diagnosis": "Metadata Not Found", "text": "N/A"} def load_signal(path): if not os.path.exists(path): return None gain = 200.0 with open(path, 'rb') as f: raw_data = np.fromfile(f, dtype=np.int16) n_leads = 12 n_samples = 5000 expected_size = n_leads * n_samples if raw_data.size < expected_size: padded = np.zeros(expected_size, dtype=np.int16) padded[:raw_data.size] = raw_data raw_data = padded else: raw_data = raw_data[:expected_size] signal = raw_data.reshape((n_samples, n_leads)).T signal = signal.astype(np.float32) / gain return signal def plot_ecg(signal, title="12-Lead ECG"): leads = ['I', 'II', 'III', 'aVR', 'aVL', 'aVF', 'V1', 'V2', 'V3', 'V4', 'V5', 'V6'] fig, axes = plt.subplots(12, 1, figsize=(10, 20), sharex=True) plt.subplots_adjust(hspace=0.2) for i in range(12): axes[i].plot(signal[i], color='k', linewidth=0.8) axes[i].set_ylabel(leads[i], rotation=0, labelpad=20, fontsize=10, fontweight='bold') axes[i].spines['top'].set_visible(False) axes[i].spines['right'].set_visible(False) axes[i].spines['bottom'].set_visible(False if i < 11 else True) axes[i].spines['left'].set_visible(True) axes[i].grid(True, linestyle='--', alpha=0.5) axes[11].set_xlabel("Samples (500Hz)", fontsize=12) fig.suptitle(title, fontsize=16, y=0.90) return fig def predict_ecg(study_id): path = os.path.join(DATA_DIR, f"{study_id}.dat") if not os.path.exists(path): return None, f"File not found for study {study_id}", {} signal = load_signal(path) if signal is None: return None, "Error loading signal", {} fig = plot_ecg(signal, title=f"Study {study_id}") tensor_sig = torch.from_numpy(signal).float().unsqueeze(0).to(DEVICE) with torch.no_grad(): logits = model(tensor_sig) probs = torch.sigmoid(logits).cpu().numpy()[0] results = {CLASSES[i]: float(probs[i]) for i in range(len(CLASSES))} full_text = example_metadata.get(study_id, {}).get("text", "Unknown") return fig, results, full_text # --- Gradio UI --- examples = [[k, v["diagnosis"]] for k, v in example_metadata.items()] examples.sort(key=lambda x: x[0]) example_ids = [k[0] for k in examples] if not example_ids: example_ids = ["No Examples Found"] with gr.Blocks(title="ECG Arrhythmia Classifier") as demo: gr.Markdown("# 🫀 AI ECG Arrhythmia Classifier") gr.Markdown("Select a study ID from the examples below to analyze the 12-lead ECG.") with gr.Row(): with gr.Column(scale=1): study_input = gr.Dropdown(choices=example_ids, label="Select Example Study ID", value=example_ids[0] if example_ids else None) gr.Markdown("### Example Descriptions") gr.DataFrame(headers=["Study ID", "Diagnosis"], value=examples, interactive=False) analyze_btn = gr.Button("Analyze ECG", variant="primary") with gr.Column(scale=2): plot_output = gr.Plot(label="12-Lead ECG Visualization") label_output = gr.Label(label="AI Predictions") text_output = gr.Textbox(label="Original Clinical Report (Ground Truth context)", lines=5) analyze_btn.click( fn=predict_ecg, inputs=[study_input], outputs=[plot_output, label_output, text_output] ) if __name__ == "__main__": demo.launch()