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+papers/S27-Effect[[:space:]]of[[:space:]]aspect[[:space:]]ratio[[:space:]]on[[:space:]]strain[[:space:]]sensing[[:space:]]capacity[[:space:]]of[[:space:]]carbon[[:space:]]fiber[[:space:]]reinforced[[:space:]]cement[[:space:]]composites.pdf filter=lfs diff=lfs merge=lfs -text +papers/S28-Smart[[:space:]]Graphite–Cement[[:space:]]Composites[[:space:]]with[[:space:]]Low[[:space:]]Percolation[[:space:]]Threshold.pdf filter=lfs diff=lfs merge=lfs -text +papers/S29-Hybrid[[:space:]]Carbon[[:space:]]Microfibers-Graphite[[:space:]]Fillers[[:space:]]for[[:space:]]Piezoresistive[[:space:]]Cementitious[[:space:]]Composites.pdf filter=lfs diff=lfs merge=lfs -text +papers/S3-Effect[[:space:]]of[[:space:]]characteristics[[:space:]]of[[:space:]]assembly[[:space:]]unit[[:space:]]of[[:space:]]CNTNCB[[:space:]]composite[[:space:]]fillers[[:space:]]on[[:space:]]properties[[:space:]]of[[:space:]]smart[[:space:]]cement-based[[:space:]]materials.pdf filter=lfs diff=lfs merge=lfs -text +papers/S30-Smart[[:space:]]Graphite–Cement[[:space:]]Composite[[:space:]]for[[:space:]]Roadway-Integrated[[:space:]]Weigh-In-Motion[[:space:]]Sensing.pdf filter=lfs diff=lfs merge=lfs -text +papers/S31-Electrical[[:space:]]and[[:space:]]piezoresistive[[:space:]]properties[[:space:]]of[[:space:]]carbon[[:space:]]nanofiber[[:space:]]cement[[:space:]]mortar[[:space:]]under[[:space:]]different[[:space:]]temperatures[[:space:]]and[[:space:]]water[[:space:]]contents.pdf filter=lfs diff=lfs merge=lfs -text +papers/S32-Self-stress-sensing-smart-concrete-containing-fine-stee_2019_Construction-an.pdf filter=lfs diff=lfs merge=lfs -text +papers/S33-IN~1.PDF filter=lfs diff=lfs merge=lfs -text +papers/S34-Self-sensing-ultra-high-performance-concrete-fo_2021_Sensors-and-Actuators-A.pdf filter=lfs diff=lfs merge=lfs -text +papers/S35-EL~1.PDF filter=lfs diff=lfs merge=lfs -text +papers/S36-Piezoresistivity[[:space:]]enhancement[[:space:]]of[[:space:]]functional[[:space:]]carbon[[:space:]]black[[:space:]]filled[[:space:]]cement-based[[:space:]]sensor[[:space:]]using[[:space:]]polypropylene[[:space:]]fibre.pdf filter=lfs diff=lfs merge=lfs -text +papers/S37-Test[[:space:]]and[[:space:]]Study[[:space:]]on[[:space:]]Electrical[[:space:]]Property[[:space:]]of[[:space:]]Conductive[[:space:]]Concrete.pdf filter=lfs diff=lfs merge=lfs -text +papers/S38[[:space:]]-[[:space:]]Electrical-resistance-based[[:space:]]Sensing[[:space:]]of[[:space:]]Impact[[:space:]][[:space:]]Damage[[:space:]]in[[:space:]]Carbon[[:space:]]Fiber[[:space:]]Reinforced[[:space:]]Cement-based[[:space:]]Materials.pdf filter=lfs diff=lfs merge=lfs -text +papers/S39[[:space:]]-[[:space:]]Electrical[[:space:]]conductivity[[:space:]]of[[:space:]]self-monitoring[[:space:]]CFRC.pdf filter=lfs diff=lfs merge=lfs -text +papers/S4-Effect-of-steel-fiber-and-carbon-black-on-the-self-s_2019_Construction-and-B.pdf filter=lfs diff=lfs merge=lfs -text +papers/S40[[:space:]]-[[:space:]]Resistance[[:space:]]Changes[[:space:]]during[[:space:]]Compression[[:space:]]of[[:space:]]Carbon[[:space:]]Fiber[[:space:]]Cement[[:space:]]COmposites.pdf filter=lfs diff=lfs merge=lfs -text +papers/S41[[:space:]]-[[:space:]]Electrical-resistance-based[[:space:]]damage[[:space:]]self-sensing[[:space:]]in[[:space:]]carbon[[:space:]]fiber[[:space:]]reinforced[[:space:]]cement.pdf filter=lfs diff=lfs merge=lfs -text +papers/S42-SE~1.PDF filter=lfs diff=lfs merge=lfs -text +papers/S43[[:space:]]-[[:space:]]the[[:space:]]100th[[:space:]]anniversary[[:space:]]of[[:space:]]the[[:space:]]four-point[[:space:]]probe[[:space:]]technique[[:space:]]the[[:space:]]role[[:space:]]of[[:space:]]probe[[:space:]]geometries[[:space:]]in[[:space:]]isotropic[[:space:]]andanisotropic[[:space:]]systems.pdf filter=lfs diff=lfs merge=lfs -text +papers/S44-Sensing[[:space:]]performance[[:space:]]of[[:space:]]engineered[[:space:]]cementitious[[:space:]]composites[[:space:]]in[[:space:]]different[[:space:]]application[[:space:]]forms.pdf filter=lfs diff=lfs merge=lfs -text +papers/S45-Insitu[[:space:]]synthesizing[[:space:]]carbon[[:space:]]nanotubes[[:space:]]on[[:space:]]cement[[:space:]]to[[:space:]]develop[[:space:]]self-sensing[[:space:]]cementitious[[:space:]]composites.pdf filter=lfs diff=lfs merge=lfs -text +papers/S46-SE~1.PDF filter=lfs diff=lfs merge=lfs -text +papers/S47-The[[:space:]]applicability[[:space:]]of[[:space:]]shungite[[:space:]]as[[:space:]]an[[:space:]]electrically[[:space:]]conductive[[:space:]]additive[[:space:]]in[[:space:]]cement[[:space:]]composites.pdf filter=lfs diff=lfs merge=lfs -text +papers/S48-Self-sensing[[:space:]]properties[[:space:]]and[[:space:]]piezoresistive[[:space:]]effect[[:space:]]of[[:space:]]high[[:space:]]ductility[[:space:]]cementitious[[:space:]]composite.pdf filter=lfs diff=lfs merge=lfs -text +papers/S49-ME~1.PDF filter=lfs diff=lfs merge=lfs -text +papers/S5-Effects-of-carbon-nanomaterial-type-and-amount-on-self-sensing-_2019_Measure.pdf filter=lfs diff=lfs merge=lfs -text +papers/S50-IM~1.PDF filter=lfs diff=lfs merge=lfs -text +papers/S51-Electrical[[:space:]]and[[:space:]]piezoresistive[[:space:]]properties[[:space:]]of[[:space:]]cement[[:space:]]composites[[:space:]]with[[:space:]]carbon[[:space:]]nanomaterials.pdf filter=lfs diff=lfs merge=lfs -text +papers/S52-Influences[[:space:]]of[[:space:]](MCNT)[[:space:]]fraction,[[:space:]]moisture,[[:space:]]stressstrain[[:space:]]level[[:space:]]on[[:space:]]the[[:space:]]electrical[[:space:]]properties[[:space:]]of[[:space:]]MCNT[[:space:]]of[[:space:]]cement-based[[:space:]]composites.pdf filter=lfs diff=lfs merge=lfs -text +papers/S53-CA~1.PDF filter=lfs diff=lfs merge=lfs -text +papers/S54-Carbon[[:space:]]Nanofibers[[:space:]]Grown[[:space:]]in[[:space:]]CaO[[:space:]]for[[:space:]]Self-Sensing[[:space:]]in[[:space:]]Mortar.pdf filter=lfs diff=lfs merge=lfs -text +papers/S55-Electro-mechanical[[:space:]]self-sensing[[:space:]]response[[:space:]]of[[:space:]]ultra-high-performance[[:space:]]fiber-reinforced[[:space:]]concrete[[:space:]]in[[:space:]]tension.pdf filter=lfs diff=lfs merge=lfs -text +papers/S55-Nanocarbon[[:space:]]black-based[[:space:]]ultra-high-performance[[:space:]]concrete[[:space:]](UHPC)[[:space:]]with[[:space:]]self-strain[[:space:]]sensing[[:space:]]capability.pdf filter=lfs diff=lfs merge=lfs -text +papers/S56-Self-sensing[[:space:]]cementitious[[:space:]]composites[[:space:]]incorporated[[:space:]]with[[:space:]]botryoid[[:space:]]hybrid[[:space:]]nano-carbon[[:space:]]materials[[:space:]]for[[:space:]]smart[[:space:]]infrastructures.pdf filter=lfs diff=lfs merge=lfs -text +papers/S57-IN~1.PDF filter=lfs diff=lfs merge=lfs -text +papers/S58-DE~1.PDF filter=lfs diff=lfs merge=lfs -text +papers/S59-Modifying[[:space:]]self-sensing[[:space:]]cement-based[[:space:]]composites[[:space:]]through[[:space:]]multiscale[[:space:]]composition.pdf filter=lfs diff=lfs merge=lfs -text +papers/S6-Electrically[[:space:]]conductive[[:space:]]behaviors[[:space:]]and[[:space:]]mechanisms[[:space:]]of[[:space:]]short-cut[[:space:]]super-fine[[:space:]]stainless[[:space:]]wire[[:space:]]reinforced[[:space:]]reactive[[:space:]]powder[[:space:]]concrete.pdf filter=lfs diff=lfs merge=lfs -text +papers/S60-Study[[:space:]]on[[:space:]]self-sensing[[:space:]]capabilities[[:space:]]of[[:space:]]smart[[:space:]]cements[[:space:]]filled[[:space:]]with[[:space:]]graphene[[:space:]]oxide[[:space:]]under[[:space:]]dynamic[[:space:]]cyclic[[:space:]]loading.pdf filter=lfs diff=lfs merge=lfs -text +papers/S61-Piezoresistivity,[[:space:]]mechanisms[[:space:]]and[[:space:]]model[[:space:]]of[[:space:]]cement-based[[:space:]]materials[[:space:]]with[[:space:]]CNT_NCB[[:space:]]composite[[:space:]]fillers.pdf filter=lfs diff=lfs merge=lfs -text +papers/S62-MU~1.PDF filter=lfs diff=lfs merge=lfs -text +papers/S63-Piezoresistive[[:space:]]properties[[:space:]]of[[:space:]]cement[[:space:]]composites[[:space:]]with[[:space:]]expanded[[:space:]]graphite.pdf filter=lfs diff=lfs merge=lfs -text +papers/S64-Electrical[[:space:]]Properties[[:space:]]of[[:space:]]Cement-Based[[:space:]]Composites[[:space:]]with[[:space:]]Carbon[[:space:]]Nanotubes,[[:space:]]Graphene,[[:space:]]and[[:space:]]Graphite[[:space:]]Nanofibers.pdf filter=lfs diff=lfs merge=lfs -text +papers/S65-AN~1.PDF filter=lfs diff=lfs merge=lfs -text +papers/S66-Experimental[[:space:]]Investigation[[:space:]]of[[:space:]]the[[:space:]]Piezoresistive[[:space:]]Properties[[:space:]]of[[:space:]]Cement[[:space:]]Composites[[:space:]]with[[:space:]]Hybrid[[:space:]]Carbon[[:space:]]Fibers[[:space:]]and[[:space:]]Nanotubes.pdf filter=lfs diff=lfs merge=lfs -text +papers/S67-Strain[[:space:]]and[[:space:]]damage[[:space:]]sensing[[:space:]]properties[[:space:]]on[[:space:]]multifunctional[[:space:]]cement[[:space:]]composites[[:space:]]with[[:space:]]CNF[[:space:]]admixture.pdf filter=lfs diff=lfs merge=lfs -text +papers/S68-EF~1.PDF filter=lfs diff=lfs merge=lfs -text +papers/S69-Cement-based[[:space:]]sensors[[:space:]]with[[:space:]]carbon[[:space:]]fibers[[:space:]]and[[:space:]]carbon[[:space:]]nanotubes[[:space:]]for[[:space:]]piezoresistive[[:space:]]sensing.pdf filter=lfs diff=lfs merge=lfs -text +papers/S7-Electrical[[:space:]]characteristics[[:space:]]and[[:space:]]pressure-sensitive[[:space:]]response[[:space:]]measurements[[:space:]]of[[:space:]]carboxyl[[:space:]]MWNT_cement[[:space:]]composites.pdf filter=lfs diff=lfs merge=lfs -text +papers/S70-EV~1.PDF filter=lfs diff=lfs merge=lfs -text +papers/S71-Enhanced[[:space:]]sensing[[:space:]]performance[[:space:]]of[[:space:]]cement-based[[:space:]]composites[[:space:]]achieved[[:space:]]via[[:space:]]magnetically[[:space:]]aligned[[:space:]]nickel[[:space:]]particle[[:space:]]network.pdf filter=lfs diff=lfs merge=lfs -text +papers/S72-Anisotropic[[:space:]]electrical[[:space:]]and[[:space:]]piezoresistive[[:space:]]sensing[[:space:]]properties[[:space:]]of[[:space:]]cement-based[[:space:]]sensors[[:space:]]with[[:space:]]aligned[[:space:]]carbon[[:space:]]fibers.pdf filter=lfs diff=lfs merge=lfs -text +papers/S73-Development[[:space:]]of[[:space:]]self-sensing[[:space:]]cement-based[[:space:]]sensor[[:space:]]using[[:space:]]recycled[[:space:]]fine[[:space:]]waste[[:space:]]glass[[:space:]]aggregates[[:space:]]coated[[:space:]]with[[:space:]]carbon[[:space:]]nanotube.pdf filter=lfs diff=lfs merge=lfs -text +papers/S74-Strain[[:space:]]sensitivity[[:space:]]of[[:space:]]steel-fiber-reinforced[[:space:]]industrial[[:space:]]smart[[:space:]]concrete.pdf filter=lfs diff=lfs merge=lfs -text +papers/S75-SE~1.PDF filter=lfs diff=lfs merge=lfs -text +papers/S76-Strain-sensing[[:space:]]characteristics[[:space:]]of[[:space:]]self-consolidating[[:space:]]concrete[[:space:]]with[[:space:]]micro-carbon[[:space:]]fibre.pdf filter=lfs diff=lfs merge=lfs -text +papers/S77-SE~1.PDF filter=lfs diff=lfs merge=lfs -text +papers/S78-Mechanical[[:space:]]and[[:space:]]self-sensing[[:space:]]properties[[:space:]]of[[:space:]]concrete[[:space:]]reinforced[[:space:]]with[[:space:]]carbon[[:space:]]nanofibres.pdf filter=lfs diff=lfs merge=lfs -text +papers/S79-Carbon[[:space:]]nanotube[[:space:]]cement-based[[:space:]]transducers[[:space:]]for[[:space:]]dynamic[[:space:]]sensing[[:space:]]of[[:space:]]strain.pdf filter=lfs diff=lfs merge=lfs -text +papers/S8-Electrically-cured-ultra-high-performance-concrete--UHPC--embe_2020_Material.pdf filter=lfs diff=lfs merge=lfs -text +papers/S80-MA~1.PDF filter=lfs diff=lfs merge=lfs -text +papers/S81-Piezoresistive[[:space:]]properties[[:space:]]of[[:space:]]ultra-high-performance[[:space:]]fiber-reinforced[[:space:]]concrete[[:space:]]incorporating[[:space:]]few-layer[[:space:]]graphene.pdf filter=lfs diff=lfs merge=lfs -text +papers/S82-SY~1.PDF filter=lfs diff=lfs merge=lfs -text +papers/S83-Effect[[:space:]]of[[:space:]]compressive[[:space:]]strain[[:space:]]on[[:space:]]electrical[[:space:]]resistivity[[:space:]]of[[:space:]]carbon[[:space:]]black-filled[[:space:]]cement-based[[:space:]]composites.pdf filter=lfs diff=lfs merge=lfs -text +papers/S84-TA~1.PDF filter=lfs diff=lfs merge=lfs -text +papers/S85-Performance[[:space:]]of[[:space:]]cement-based[[:space:]]sensors[[:space:]]with[[:space:]]CNT[[:space:]]for[[:space:]]strain[[:space:]]sensing.pdf filter=lfs diff=lfs merge=lfs -text +papers/S86-EL~1.PDF filter=lfs diff=lfs merge=lfs -text +papers/S87-EL~1.PDF filter=lfs diff=lfs merge=lfs -text +papers/S88-ST~1.PDF filter=lfs diff=lfs merge=lfs -text +papers/S89-Piezoresistivity[[:space:]]of[[:space:]]carbon[[:space:]]fiber[[:space:]]graphite[[:space:]]cement-based[[:space:]]composites[[:space:]]with[[:space:]]CCCW.pdf filter=lfs diff=lfs merge=lfs -text +papers/S9-Electro-mechanical-self-sensing-response-of-ultra-high-_2018_Composites-Part.pdf filter=lfs diff=lfs merge=lfs -text +papers/S90-EX~1.PDF filter=lfs diff=lfs merge=lfs -text +papers/S91-A[[:space:]]comparative[[:space:]]study[[:space:]]on[[:space:]]the[[:space:]]influences[[:space:]]of[[:space:]]CNT[[:space:]]and[[:space:]]GNP[[:space:]]on[[:space:]]the[[:space:]]piezoresistivity[[:space:]]of[[:space:]]cement[[:space:]]composites.pdf filter=lfs diff=lfs merge=lfs -text +papers/S92-Research-on-the-self-sensing-and-mechanical-properties-of_2021_Cement-and-Co.pdf filter=lfs diff=lfs merge=lfs -text +papers/S93-Enhanced[[:space:]]effects[[:space:]]of[[:space:]]carbon-based[[:space:]]conductive[[:space:]]materials[[:space:]]on[[:space:]]the[[:space:]]piezoresistive[[:space:]]characteristics[[:space:]]of[[:space:]]cementitious[[:space:]]composites.pdf filter=lfs diff=lfs merge=lfs -text +papers/S94-The[[:space:]]Utilization[[:space:]]of[[:space:]]Pearson’s[[:space:]]Method[[:space:]]to[[:space:]]Analyze[[:space:]]Piezoresistive[[:space:]]Effect[[:space:]]in[[:space:]]Self-Sensing[[:space:]]Cement[[:space:]]Composite[[:space:]]with[[:space:]]Graphite.pdf filter=lfs diff=lfs merge=lfs -text +papers/S95-SE~1.PDF filter=lfs diff=lfs merge=lfs -text +papers/S96-EL~1.PDF filter=lfs diff=lfs merge=lfs -text +papers/S97-Self-sensing[[:space:]]GFRP-reinforced[[:space:]]concrete[[:space:]]beams[[:space:]]containing[[:space:]]carbon[[:space:]]nanotube-nano[[:space:]]carbon[[:space:]]black[[:space:]]composite[[:space:]]fillers.pdf filter=lfs diff=lfs merge=lfs -text +papers/S98-MI~1.PDF filter=lfs diff=lfs merge=lfs -text +papers/S99-Commercial[[:space:]]and[[:space:]]recycled[[:space:]]carbon-based[[:space:]]fillers[[:space:]]and[[:space:]]fibers[[:space:]]for[[:space:]]self-sensing[[:space:]]cement-based[[:space:]]composites.pdf filter=lfs diff=lfs merge=lfs -text +papers/Self-sensing[[:space:]]enhancement[[:space:]]in[[:space:]]smart[[:space:]]ultra-high[[:space:]]performance[[:space:]]concrete[[:space:]]composites[[:space:]]via[[:space:]]multi-scale[[:space:]]carbon[[:space:]]black.pdf filter=lfs diff=lfs merge=lfs -text +papers/Self-sensing[[:space:]]performance[[:space:]]of[[:space:]]cementitious[[:space:]]composites[[:space:]]with[[:space:]]functional[[:space:]]fillers[[:space:]]at[[:space:]]macro,[[:space:]]micro[[:space:]]and[[:space:]]nano[[:space:]]scales.pdf filter=lfs diff=lfs merge=lfs -text +papers/Self‐Sensing[[:space:]]Cementitious[[:space:]]Composites[[:space:]]with[[:space:]]Hierarchical[[:space:]]Carbon[[:space:]]Fiber‐Carbon[[:space:]]Nanotube[[:space:]]Composite[[:space:]]Fillers.pdf filter=lfs diff=lfs merge=lfs -text +papers/Silane[[:space:]]treatment[[:space:]]of[[:space:]]bagasse[[:space:]]fiber[[:space:]]for[[:space:]]reinforcement[[:space:]]of[[:space:]]cementitious[[:space:]]composites.pdf filter=lfs diff=lfs merge=lfs -text +papers/The[[:space:]]effect[[:space:]]of[[:space:]]silane[[:space:]]surface[[:space:]]treatment[[:space:]]on[[:space:]]the[[:space:]]mechanical[[:space:]]properties[[:space:]]of[[:space:]]UHPFRC.pdf filter=lfs diff=lfs merge=lfs -text diff --git a/October1.xlsx b/October1.xlsx new file mode 100644 index 0000000000000000000000000000000000000000..a8ceaf6aca825206f3670ab9dc9fe3cc69e8ac4a Binary files /dev/null and b/October1.xlsx differ diff --git a/README.md b/README.md new file mode 100644 index 0000000000000000000000000000000000000000..3b3af4618f4267e1d3fceab027793534ceda67ff --- /dev/null +++ b/README.md @@ -0,0 +1,12 @@ +--- +title: Final +emoji: 🏢 +colorFrom: indigo +colorTo: gray +sdk: gradio +sdk_version: 5.49.1 +app_file: app.py +pinned: false +--- + +Check out the configuration reference at https://huggingface.co/docs/hub/spaces-config-reference diff --git a/app.py b/app.py new file mode 100644 index 0000000000000000000000000000000000000000..35c7eeb4aba4c260e3094c67021e25eb3ecab8ea --- /dev/null +++ b/app.py @@ -0,0 +1,1341 @@ +# ================================================================ +# Self-Sensing Concrete Assistant — Predictor (XGB) + Hybrid RAG +# - Uses local 'papers/' folder for literature +# - Robust MMR sentence selection (no list index errors) +# - Predictor: safe model caching + safe feature alignment +# - Stable categoricals ("NA"); no over-strict completeness gate +# - Lightweight instrumentation (JSONL logs per RAG turn) +# - Dark-blue theme + Evaluate tab + k-slider styling +# - Citations use SHORT CODES (e.g., S71, S92) from filenames +# ================================================================ + +# ---------------------- Runtime flags (HF-safe) ---------------------- +import os +os.environ["TRANSFORMERS_NO_TF"] = "1" +os.environ["TRANSFORMERS_NO_FLAX"] = "1" +os.environ["TOKENIZERS_PARALLELISM"] = "false" + +# ------------------------------- Imports ------------------------------ +import re, joblib, warnings, json, traceback, time, uuid, subprocess, sys +from pathlib import Path +from typing import List, Dict, Any, Optional + +import numpy as np +import pandas as pd +import gradio as gr + +warnings.filterwarnings("ignore", category=UserWarning) + +# Optional deps (handled gracefully if missing) +USE_DENSE = True +try: + from sentence_transformers import SentenceTransformer +except Exception: + USE_DENSE = False + +try: + from rank_bm25 import BM25Okapi +except Exception: + BM25Okapi = None + print("rank_bm25 not installed; BM25 disabled (TF-IDF still works).") + +# Optional OpenAI (for LLM synthesis) +OPENAI_API_KEY = os.getenv("OPENAI_API_KEY") +OPENAI_MODEL = os.getenv("OPENAI_MODEL", "gpt-5") +try: + from openai import OpenAI +except Exception: + OpenAI = None + +# LLM availability flag — used internally; UI remains hidden +LLM_AVAILABLE = (OPENAI_API_KEY is not None and OPENAI_API_KEY.strip() != "" and OpenAI is not None) + +# ========================= Predictor (kept) ========================= +CF_COL = "Conductive Filler Conc. (wt%)" +TARGET_COL = "Stress GF (MPa-1)" +CANON_NA = "NA" # canonical placeholder for categoricals + +TYPE_CHOICES = [ + "CNT", + "Brass fiber", + "GNP", + "Steel fiber", + "Carbon fiber", + "Graphene oxide", + "Graphene", + "Carbon black", + "Graphite", + "Shungite", + "Nickel powder", + "Glass cullet", + "MWCNT", + "Nano carbon black", + "Carbon powder", + "Gasification char", + "Used foundry sand", + "Nickel fiber", + "Nickel aggregate", + "Steel slag aggregate", + "TiO2", + "Carbonyl iron powder", + "Magnetite aggregate", + CANON_NA +] + +MAIN_VARIABLES = [ + "Filler 1 Type", + "Filler 1 Diameter (µm)", + "Filler 1 Length (mm)", + CF_COL, + "Filler 1 Dimensionality", + "Filler 2 Type", + "Filler 2 Diameter (µm)", + "Filler 2 Length (mm)", + "Filler 2 Dimensionality", + "Specimen Volume (mm3)", + "Probe Count", + "Probe Material", + "W/B", + "S/B", + "Gauge Length (mm)", + "Curing Condition", + "Number of Fillers", + "Drying Temperature (°C)", + "Drying Duration (hr)", + "Loading Rate (MPa/s)", + "Modulus of Elasticity (GPa)", + "Current Type", + "Applied Voltage (V)" +] + +NUMERIC_COLS = { + "Filler 1 Diameter (µm)", + "Filler 1 Length (mm)", + CF_COL, + "Filler 2 Diameter (µm)", + "Filler 2 Length (mm)", + "Specimen Volume (mm3)", + "Probe Count", + "W/B", + "S/B", + "Gauge Length (mm)", + "Number of Fillers", + "Drying Temperature (°C)", + "Drying Duration (hr)", + "Loading Rate (MPa/s)", + "Modulus of Elasticity (GPa)", + "Applied Voltage (V)" +} + +CATEGORICAL_COLS = { + "Filler 1 Type", + "Filler 1 Dimensionality", + "Filler 2 Type", + "Filler 2 Dimensionality", + "Probe Material", + "Curing Condition", + "Current Type" +} + +DIM_CHOICES = ["0D", "1D", "2D", "3D", CANON_NA] +CURRENT_CHOICES = ["DC", "AC", CANON_NA] + +MODEL_CANDIDATES = [ + "stress_gf_xgb.joblib", + "models/stress_gf_xgb.joblib", + "/home/user/app/stress_gf_xgb.joblib", + os.getenv("MODEL_PATH", "") +] + +# ---------- Model caching + status ---------- +MODEL = None +MODEL_STATUS = "🔴 Model not loaded" + +def _try_load_model(): + global MODEL, MODEL_STATUS + for p in [x for x in MODEL_CANDIDATES if x]: + if os.path.exists(p): + try: + MODEL = joblib.load(p) + MODEL_STATUS = f"🟢 Loaded model: {Path(p).name}" + print("[ModelLoad] Loaded:", p) + return + except Exception as e: + print(f"[ModelLoad] Error from {p}: {e}") + traceback.print_exc() + MODEL = None + if MODEL is None: + MODEL_STATUS = "🔴 Model not found (place stress_gf_xgb.joblib at repo root or models/, or set MODEL_PATH)" + print("[ModelLoad]", MODEL_STATUS) + +_try_load_model() # load at import time + +def _canon_cat(v: Any) -> str: + """Stable, canonical category placeholder normalization.""" + if v is None: + return CANON_NA + s = str(v).strip() + if s == "" or s.upper() in {"N/A", "NONE", "NULL"}: + return CANON_NA + return s + +def _to_float_or_nan(v): + if v in ("", None): + return np.nan + try: + return float(str(v).replace(",", "")) + except Exception: + return np.nan + +def _coerce_to_row(form_dict: dict) -> pd.DataFrame: + row = {} + for col in MAIN_VARIABLES: + v = form_dict.get(col, None) + if col in NUMERIC_COLS: + row[col] = _to_float_or_nan(v) + elif col in CATEGORICAL_COLS: + row[col] = _canon_cat(v) + else: + s = str(v).strip() if v is not None else "" + row[col] = s if s else CANON_NA + return pd.DataFrame([row], columns=MAIN_VARIABLES) + +def _align_columns_to_model(df: pd.DataFrame, mdl) -> pd.DataFrame: + """ + SAFE alignment: + - If mdl.feature_names_in_ exists AND is a subset of df.columns (raw names), reorder to it. + - Else, try a Pipeline step (e.g., 'preprocessor') with feature_names_in_ subset of df.columns. + - Else, DO NOT align (let the pipeline handle columns by name). + """ + try: + feat = getattr(mdl, "feature_names_in_", None) + if isinstance(feat, (list, np.ndarray, pd.Index)): + feat = list(feat) + if all(c in df.columns for c in feat): + return df[feat] + + if hasattr(mdl, "named_steps"): + for key in ["preprocessor", "columntransformer"]: + if key in mdl.named_steps: + step = mdl.named_steps[key] + feat2 = getattr(step, "feature_names_in_", None) + if isinstance(feat2, (list, np.ndarray, pd.Index)): + feat2 = list(feat2) + if all(c in df.columns for c in feat2): + return df[feat2] + # fallback to first step if it exposes input names + try: + first_key = list(mdl.named_steps.keys())[0] + step = mdl.named_steps[first_key] + feat3 = getattr(step, "feature_names_in_", None) + if isinstance(feat3, (list, np.ndarray, pd.Index)): + feat3 = list(feat3) + if all(c in df.columns for c in feat3): + return df[feat3] + except Exception: + pass + + return df + except Exception as e: + print(f"[Align] Skip aligning due to: {e}") + traceback.print_exc() + return df + +def predict_fn(**kwargs): + """ + Always attempt prediction. + - Missing numerics -> NaN (imputer handles) + - Categoricals -> 'NA' + - If model missing or inference error -> 0.0 (keeps UI stable) + """ + if MODEL is None: + return 0.0 + X_new = _coerce_to_row(kwargs) + X_new = _align_columns_to_model(X_new, MODEL) + try: + y_raw = MODEL.predict(X_new) # log1p or original scale depending on training + if getattr(MODEL, "target_is_log1p_", False): + y = np.expm1(y_raw) + else: + y = y_raw + y = float(np.asarray(y).ravel()[0]) + return max(y, 0.0) + except Exception as e: + print(f"[Predict] {e}") + traceback.print_exc() + return 0.0 + +EXAMPLE = { + "Filler 1 Type": "CNT", + "Filler 1 Dimensionality": "1D", + "Filler 1 Diameter (µm)": 0.02, + "Filler 1 Length (mm)": 1.2, + CF_COL: 0.5, + "Filler 2 Type": "", + "Filler 2 Dimensionality": CANON_NA, + "Filler 2 Diameter (µm)": None, + "Filler 2 Length (mm)": None, + "Specimen Volume (mm3)": 1000, + "Probe Count": 2, + "Probe Material": "Copper", + "W/B": 0.4, + "S/B": 2.5, + "Gauge Length (mm)": 20, + "Curing Condition": "28d water, 20°C", + "Number of Fillers": 1, + "Drying Temperature (°C)": 60, + "Drying Duration (hr)": 24, + "Loading Rate (MPa/s)": 0.1, + "Modulus of Elasticity (GPa)": 25, + "Current Type": "DC", + "Applied Voltage (V)": 5.0, +} + +def _fill_example(): + return [EXAMPLE.get(k, None) for k in MAIN_VARIABLES] + +def _clear_all(): + cleared = [] + for col in MAIN_VARIABLES: + if col in NUMERIC_COLS: + cleared.append(None) + elif col in {"Filler 1 Dimensionality", "Filler 2 Dimensionality"}: + cleared.append(CANON_NA) + elif col == "Current Type": + cleared.append(CANON_NA) + else: + cleared.append("") + return cleared + +# ========================= Hybrid RAG ========================= +ARTIFACT_DIR = Path("rag_artifacts"); ARTIFACT_DIR.mkdir(exist_ok=True) +TFIDF_VECT_PATH = ARTIFACT_DIR / "tfidf_vectorizer.joblib" +TFIDF_MAT_PATH = ARTIFACT_DIR / "tfidf_matrix.joblib" +BM25_TOK_PATH = ARTIFACT_DIR / "bm25_tokens.joblib" +EMB_NPY_PATH = ARTIFACT_DIR / "chunk_embeddings.npy" +RAG_META_PATH = ARTIFACT_DIR / "chunks.parquet" + +LOCAL_PDF_DIR = Path("papers"); LOCAL_PDF_DIR.mkdir(exist_ok=True) +USE_ONLINE_SOURCES = os.getenv("USE_ONLINE_SOURCES", "false").lower() == "true" + +W_TFIDF_DEFAULT = 0.50 if not USE_DENSE else 0.30 +W_BM25_DEFAULT = 0.50 if not USE_DENSE else 0.30 +W_EMB_DEFAULT = 0.00 if USE_DENSE is False else 0.40 + +_SENT_SPLIT_RE = re.compile(r"(?<=[.!?])\s+|\n+") +TOKEN_RE = re.compile(r"[A-Za-z0-9_#+\-/\.%]+") +def sent_split(text: str) -> List[str]: + sents = [s.strip() for s in _SENT_SPLIT_RE.split(text) if s.strip()] + return [s for s in sents if len(s.split()) >= 5] +def tokenize(text: str) -> List[str]: + return [t.lower() for t in TOKEN_RE.findall(text)] + +def _extract_pdf_text(pdf_path: Path) -> str: + try: + import fitz + doc = fitz.open(pdf_path) + out = [] + for i, page in enumerate(doc): + out.append(f"[[PAGE={i+1}]]\n{page.get_text('text') or ''}") + return "\n\n".join(out) + except Exception: + try: + from pypdf import PdfReader + reader = PdfReader(str(pdf_path)) + out = [] + for i, p in enumerate(reader.pages): + txt = p.extract_text() or "" + out.append(f"[[PAGE={i+1}]]\n{txt}") + return "\n\n".join(out) + except Exception as e: + print(f"PDF read error ({pdf_path}): {e}") + return "" + +def chunk_by_sentence_windows(text: str, win_size=8, overlap=2) -> List[str]: + sents = sent_split(text) + chunks, step = [], max(1, win_size - overlap) + for i in range(0, len(sents), step): + window = sents[i:i+win_size] + if not window: break + chunks.append(" ".join(window)) + return chunks + +def _safe_init_st_model(name: str): + global USE_DENSE + if not USE_DENSE: + return None + try: + return SentenceTransformer(name) + except Exception as e: + print("Dense embeddings unavailable:", e) + USE_DENSE = False + return None + +def build_or_load_hybrid(pdf_dir: Path): + # Build or load the hybrid retriever cache + have_cache = (TFIDF_VECT_PATH.exists() and TFIDF_MAT_PATH.exists() + and RAG_META_PATH.exists() + and (BM25_TOK_PATH.exists() or BM25Okapi is None) + and (EMB_NPY_PATH.exists() or not USE_DENSE)) + if have_cache: + vectorizer = joblib.load(TFIDF_VECT_PATH) + X_tfidf = joblib.load(TFIDF_MAT_PATH) + meta = pd.read_parquet(RAG_META_PATH) + bm25_toks = joblib.load(BM25_TOK_PATH) if BM25Okapi is not None else None + emb = np.load(EMB_NPY_PATH) if (USE_DENSE and EMB_NPY_PATH.exists()) else None + return vectorizer, X_tfidf, meta, bm25_toks, emb + + rows, all_tokens = [], [] + pdf_paths = list(Path(pdf_dir).glob("**/*.pdf")) + print(f"Indexing PDFs in {pdf_dir} — found {len(pdf_paths)} files.") + for pdf in pdf_paths: + raw = _extract_pdf_text(pdf) + if not raw.strip(): + continue + for i, ch in enumerate(chunk_by_sentence_windows(raw, win_size=8, overlap=2)): + rows.append({"doc_path": str(pdf), "chunk_id": i, "text": ch}) + all_tokens.append(tokenize(ch)) + if not rows: + meta = pd.DataFrame(columns=["doc_path", "chunk_id", "text"]) + vectorizer = None; X_tfidf = None; emb = None; all_tokens = None + return vectorizer, X_tfidf, meta, all_tokens, emb + + meta = pd.DataFrame(rows) + from sklearn.feature_extraction.text import TfidfVectorizer + vectorizer = TfidfVectorizer( + ngram_range=(1,2), + min_df=1, max_df=0.95, + sublinear_tf=True, smooth_idf=True, + lowercase=True, + token_pattern=r"(?u)\b\w[\w\-\./%+#]*\b" + ) + X_tfidf = vectorizer.fit_transform(meta["text"].tolist()) + + emb = None + if USE_DENSE: + try: + st_model = _safe_init_st_model(os.getenv("EMB_MODEL_NAME", "sentence-transformers/all-MiniLM-L6-v2")) + if st_model is not None: + from sklearn.preprocessing import normalize as sk_normalize + em = st_model.encode(meta["text"].tolist(), batch_size=64, show_progress_bar=False, convert_to_numpy=True) + emb = sk_normalize(em) + np.save(EMB_NPY_PATH, emb) + except Exception as e: + print("Dense embedding failed:", e) + emb = None + + joblib.dump(vectorizer, TFIDF_VECT_PATH) + joblib.dump(X_tfidf, TFIDF_MAT_PATH) + if BM25Okapi is not None: + joblib.dump(all_tokens, BM25_TOK_PATH) + meta.to_parquet(RAG_META_PATH, index=False) + return vectorizer, X_tfidf, meta, all_tokens, emb + +tfidf_vectorizer, tfidf_matrix, rag_meta, bm25_tokens, emb_matrix = build_or_load_hybrid(LOCAL_PDF_DIR) +bm25 = BM25Okapi(bm25_tokens) if (BM25Okapi is not None and bm25_tokens is not None) else None +st_query_model = _safe_init_st_model(os.getenv("EMB_MODEL_NAME", "sentence-transformers/all-MiniLM-L6-v2")) + +def _extract_page(text_chunk: str) -> str: + # Correct: [[PAGE=123]] + m = list(re.finditer(r"\[\[PAGE=(\d+)\]\]", text_chunk or "")) + return (m[-1].group(1) if m else "?") + +def _short_doc_code(doc_path: str) -> str: + """ + Turn a full filename like: + 'S92-Research-on-the-self-sensing-and-mechanical-properties-of_2021_Cement-and-Co.pdf' + into a short code: + 'S92' + For generic names, falls back to the first token of the stem. + """ + if not doc_path: + return "Source" + name = Path(doc_path).name + stem = name.rsplit(".", 1)[0] + # Split on whitespace, hyphen, underscore + parts = re.split(r"[ \t\n\r\-_]+", stem) + for p in parts: + if p: + return p + return stem or "Source" + +def hybrid_search(query: str, k=8, w_tfidf=W_TFIDF_DEFAULT, w_bm25=W_BM25_DEFAULT, w_emb=W_EMB_DEFAULT): + if rag_meta is None or rag_meta.empty: + return pd.DataFrame() + + # Dense scores + if USE_DENSE and st_query_model is not None and emb_matrix is not None and w_emb > 0: + try: + from sklearn.preprocessing import normalize as sk_normalize + q_emb = st_query_model.encode([query], convert_to_numpy=True) + q_emb = sk_normalize(q_emb)[0] + dense_scores = emb_matrix @ q_emb + except Exception as e: + print("Dense query encoding failed:", e) + dense_scores = np.zeros(len(rag_meta), dtype=float); w_emb = 0.0 + else: + dense_scores = np.zeros(len(rag_meta), dtype=float); w_emb = 0.0 + + # TF-IDF scores + if tfidf_vectorizer is not None and tfidf_matrix is not None: + q_vec = tfidf_vectorizer.transform([query]) + tfidf_scores = (tfidf_matrix @ q_vec.T).toarray().ravel() + else: + tfidf_scores = np.zeros(len(rag_meta), dtype=float); w_tfidf = 0.0 + + # BM25 scores + if bm25 is not None: + q_tokens = [t.lower() for t in re.findall(r"[A-Za-z0-9_#+\-\/\.%]+", query)] + bm25_scores = np.array(bm25.get_scores(q_tokens), dtype=float) + else: + bm25_scores = np.zeros(len(rag_meta), dtype=float); w_bm25 = 0.0 + + def _norm(x): + x = np.asarray(x, dtype=float) + if np.allclose(x.max(), x.min()): + return np.zeros_like(x) + return (x - x.min()) / (x.max() - x.min()) + + s_dense = _norm(dense_scores) + s_tfidf = _norm(tfidf_scores) + s_bm25 = _norm(bm25_scores) + + total_w = (w_tfidf + w_bm25 + w_emb) or 1.0 + w_tfidf, w_bm25, w_emb = w_tfidf/total_w, w_bm25/total_w, w_emb/total_w + + combo = w_emb * s_dense + w_tfidf * s_tfidf + w_bm25 * s_bm25 + idx = np.argsort(-combo)[:k] + hits = rag_meta.iloc[idx].copy() + hits["score_dense"] = s_dense[idx] + hits["score_tfidf"] = s_tfidf[idx] + hits["score_bm25"] = s_bm25[idx] + hits["score"] = combo[idx] + return hits.reset_index(drop=True) + +def split_sentences(text: str) -> List[str]: + sents = sent_split(text) + return [s for s in sents if 6 <= len(s.split()) <= 60] + +def mmr_select_sentences(question: str, hits: pd.DataFrame, top_n=4, pool_per_chunk=6, lambda_div=0.7): + """ + Robust MMR sentence picker: + - Handles empty pools + - Clamps top_n to pool size + - Avoids 'list index out of range' + """ + # Build pool + pool = [] + for _, row in hits.iterrows(): + doc_code = _short_doc_code(row["doc_path"]) + page = _extract_page(row["text"]) + sents = split_sentences(row["text"]) + if not sents: + continue + for s in sents[:max(1, int(pool_per_chunk))]: + pool.append({"sent": s, "doc": doc_code, "page": page}) + + if not pool: + return [] + + # Relevance vectors + sent_texts = [p["sent"] for p in pool] + use_dense = USE_DENSE and st_query_model is not None + try: + if use_dense: + from sklearn.preprocessing import normalize as sk_normalize + enc = st_query_model.encode([question] + sent_texts, convert_to_numpy=True) + q_vec = sk_normalize(enc[:1])[0] + S = sk_normalize(enc[1:]) + rel = (S @ q_vec) + def sim_fn(i, j): return float(S[i] @ S[j]) + else: + from sklearn.feature_extraction.text import TfidfVectorizer + vect = TfidfVectorizer().fit(sent_texts + [question]) + Q = vect.transform([question]); S = vect.transform(sent_texts) + rel = (S @ Q.T).toarray().ravel() + def sim_fn(i, j): + num = (S[i] @ S[j].T) + return float(num.toarray()[0, 0]) if hasattr(num, "toarray") else float(num) + except Exception: + # Fallback: uniform relevance if vectorization fails + rel = np.ones(len(sent_texts), dtype=float) + def sim_fn(i, j): return 0.0 + + # Normalize lambda_div + lambda_div = float(np.clip(lambda_div, 0.0, 1.0)) + + # Select first by highest relevance + remain = list(range(len(pool))) + if not remain: + return [] + first = int(np.argmax(rel)) + selected_idx = [first] + selected = [pool[first]] + remain.remove(first) + + # Clamp top_n + max_pick = min(int(top_n), len(pool)) + while len(selected) < max_pick and remain: + cand_scores = [] + for i in remain: + div_i = max(sim_fn(i, j) for j in selected_idx) if selected_idx else 0.0 + score = lambda_div * float(rel[i]) - (1.0 - lambda_div) * div_i + cand_scores.append((score, i)) + if not cand_scores: + break + cand_scores.sort(reverse=True) + _, best_i = cand_scores[0] + selected_idx.append(best_i) + selected.append(pool[best_i]) + remain.remove(best_i) + + return selected + +def compose_extractive(selected: List[Dict[str, Any]]) -> str: + if not selected: + return "" + # Citations inside answer are short codes only, e.g. (S92), (S71) + return " ".join(f"{s['sent']} ({s['doc']})" for s in selected) + +# ========================= NEW: Instrumentation helpers ========================= +LOG_PATH = ARTIFACT_DIR / "rag_logs.jsonl" +OPENAI_IN_COST_PER_1K = float(os.getenv("OPENAI_COST_IN_PER_1K", "0")) +OPENAI_OUT_COST_PER_1K = float(os.getenv("OPENAI_COST_OUT_PER_1K", "0")) + +def _safe_write_jsonl(path: Path, record: dict): + try: + with open(path, "a", encoding="utf-8") as f: + f.write(json.dumps(record, ensure_ascii=False) + "\n") + except Exception as e: + print("[Log] write failed:", e) + +def _calc_cost_usd(prompt_toks, completion_toks): + if prompt_toks is None or completion_toks is None: + return None + return (prompt_toks / 1000.0) * OPENAI_IN_COST_PER_1K + (completion_toks / 1000.0) * OPENAI_OUT_COST_PER_1K + +# ----------------- Modified to return (text, usage_dict) ----------------- +def synthesize_with_llm(question: str, sentence_lines: List[str], model: str = None, temperature: float = 0.2): + if not LLM_AVAILABLE: + return None, None + client = OpenAI(api_key=OPENAI_API_KEY) + model = model or OPENAI_MODEL + SYSTEM_PROMPT = ( + "You are a scientific assistant for self-sensing cementitious materials.\n" + "Answer STRICTLY using the provided sentences.\n" + "Do not invent facts. Keep it concise (3–6 sentences).\n" + "Retain inline citations exactly as given (e.g., (S92), (S92; S71))." + ) + user_prompt = ( + f"Question: {question}\n\n" + f"Use ONLY these sentences to answer; keep their inline citations:\n" + + "\n".join(f"- {s}" for s in sentence_lines) + ) + try: + resp = client.responses.create( + model=model, + input=[ + {"role": "system", "content": SYSTEM_PROMPT}, + {"role": "user", "content": user_prompt}, + ], + temperature=temperature, + ) + out_text = getattr(resp, "output_text", None) or str(resp) + usage = None + try: + u = getattr(resp, "usage", None) + if u: + pt = getattr(u, "prompt_tokens", None) if hasattr(u, "prompt_tokens") else u.get("prompt_tokens", None) + ct = getattr(u, "completion_tokens", None) if hasattr(u, "completion_tokens") else u.get("completion_tokens", None) + usage = {"prompt_tokens": pt, "completion_tokens": ct} + except Exception: + usage = None + return out_text, usage + except Exception: + return None, None + +def rag_reply( + question: str, + k: int = 8, + n_sentences: int = 4, + include_passages: bool = False, + use_llm: bool = False, + model: str = None, + temperature: float = 0.2, + strict_quotes_only: bool = False, + w_tfidf: float = W_TFIDF_DEFAULT, + w_bm25: float = W_BM25_DEFAULT, + w_emb: float = W_EMB_DEFAULT +) -> str: + run_id = str(uuid.uuid4()) + t0_total = time.time() + t0_retr = time.time() + + # --- Retrieval --- + hits = hybrid_search(question, k=k, w_tfidf=w_tfidf, w_bm25=w_bm25, w_emb=w_emb) + t1_retr = time.time() + latency_ms_retriever = int((t1_retr - t0_retr) * 1000) + + if hits is None or hits.empty: + final = "No indexed PDFs found. Upload PDFs to the 'papers/' folder and reload the Space." + record = { + "run_id": run_id, + "ts": int(time.time()*1000), + "inputs": { + "question": question, "top_k": int(k), "n_sentences": int(n_sentences), + "w_tfidf": float(w_tfidf), "w_bm25": float(w_bm25), "w_emb": float(w_emb), + "use_llm": bool(use_llm), "model": model, "temperature": float(temperature) + }, + "retrieval": {"hits": [], "latency_ms_retriever": latency_ms_retriever}, + "output": {"final_answer": final, "used_sentences": []}, + "latency_ms_total": int((time.time()-t0_total)*1000), + "openai": None + } + _safe_write_jsonl(LOG_PATH, record) + return final + + # Select sentences + selected = mmr_select_sentences(question, hits, top_n=int(n_sentences), pool_per_chunk=6, lambda_div=0.7) + + # Header citations: short codes only, joined by '; ' (e.g., "S55; S71; S92") + from urllib.parse import quote + + + + header_links = [] + unique_codes = set() + + for _, r in hits.head(6).iterrows(): + doc_path = r["doc_path"] + filename = Path(doc_path).name + short_code = _short_doc_code(doc_path) + + # ✅ Correct Gradio route is /file= (NOT /file/) + abs_pdf = (LOCAL_PDF_DIR / filename).resolve() + href = f"/file={quote('papers/' + filename)}" + link = f'{short_code}' + + if short_code not in unique_codes: + header_links.append(link) + unique_codes.add(short_code) + + header_cites = "; ".join(header_links) + + coverage_note = "" if len(unique_codes) >= 3 else ( + f"\n\n> Note: Only {len(unique_codes)} unique source(s) contributed. " + "Add more PDFs or increase Top-K." +) + + # Prepare retrieval list for logging (full filenames kept here) + retr_list = [] + for _, r in hits.iterrows(): + retr_list.append({ + "doc": Path(r["doc_path"]).name, + "page": _extract_page(r["text"]), + "score_tfidf": float(r.get("score_tfidf", 0.0)), + "score_bm25": float(r.get("score_bm25", 0.0)), + "score_dense": float(r.get("score_dense", 0.0)), + "combo_score": float(r.get("score", 0.0)), + }) + + # Strict quotes only (no LLM) + if strict_quotes_only: + if not selected: + final = ( + "**Quoted Passages:**\n\n---\n" + + "\n\n".join(hits['text'].tolist()[:2]) + + f"\n\n**Citations:** {header_cites}{coverage_note}" + ) + else: + bullets = "\n- ".join(f"{s['sent']} ({s['doc']})" for s in selected) + final = f"**Quoted Passages:**\n- {bullets}\n\n**Citations:** {header_cites}{coverage_note}" + if include_passages: + final += "\n\n---\n" + "\n\n".join(hits['text'].tolist()[:2]) + + record = { + "run_id": run_id, + "ts": int(time.time()*1000), + "inputs": { + "question": question, "top_k": int(k), "n_sentences": int(n_sentences), + "w_tfidf": float(w_tfidf), "w_bm25": float(w_bm25), "w_emb": float(w_emb), + "use_llm": False, "model": None, "temperature": float(temperature) + }, + "retrieval": {"hits": retr_list, "latency_ms_retriever": latency_ms_retriever}, + "output": { + "final_answer": final, + "used_sentences": [{"sent": s["sent"], "doc": s["doc"], "page": s["page"]} for s in selected] + }, + "latency_ms_total": int((time.time()-t0_total)*1000), + "openai": None + } + _safe_write_jsonl(LOG_PATH, record) + return final + + # Extractive or LLM synthesis + extractive = compose_extractive(selected) + llm_usage = None + llm_latency_ms = None + if use_llm and selected: + # Lines already carry short-code citations, e.g. "... (S92)" + lines = [f"{s['sent']} ({s['doc']})" for s in selected] + t0_llm = time.time() + llm_text, llm_usage = synthesize_with_llm(question, lines, model=model, temperature=temperature) + t1_llm = time.time() + llm_latency_ms = int((t1_llm - t0_llm) * 1000) + + if llm_text: + final = f"**Answer (LLM synthesis):** {llm_text}\n\n**Citations:** {header_cites}{coverage_note}" + if include_passages: + final += "\n\n---\n" + "\n\n".join(hits['text'].tolist()[:2]) + else: + if not extractive: + final = ( + f"**Answer:** Here are relevant passages.\n\n" + f"**Citations:** {header_cites}{coverage_note}\n\n---\n" + + "\n\n".join(hits['text'].tolist()[:2]) + ) + else: + final = f"**Answer:** {extractive}\n\n**Citations:** {header_cites}{coverage_note}" + if include_passages: + final += "\n\n---\n" + "\n\n".join(hits['text'].tolist()[:2]) + else: + if not extractive: + final = ( + f"**Answer:** Here are relevant passages.\n\n" + f"**Citations:** {header_cites}{coverage_note}\n\n---\n" + + "\n\n".join(hits['text'].tolist()[:2]) + ) + else: + final = f"**Answer:** {extractive}\n\n**Citations:** {header_cites}{coverage_note}" + if include_passages: + final += "\n\n---\n" + "\n\n".join(hits['text'].tolist()[:2]) + + # --------- Log full run --------- + prompt_toks = llm_usage.get("prompt_tokens") if llm_usage else None + completion_toks = llm_usage.get("completion_tokens") if llm_usage else None + cost_usd = _calc_cost_usd(prompt_toks, completion_toks) + + total_ms = int((time.time() - t0_total) * 1000) + record = { + "run_id": run_id, + "ts": int(time.time()*1000), + "inputs": { + "question": question, "top_k": int(k), "n_sentences": int(n_sentences), + "w_tfidf": float(w_tfidf), "w_bm25": float(w_bm25), "w_emb": float(w_emb), + "use_llm": bool(use_llm), "model": model, "temperature": float(temperature) + }, + "retrieval": {"hits": retr_list, "latency_ms_retriever": latency_ms_retriever}, + "output": { + "final_answer": final, + "used_sentences": [{"sent": s['sent'], "doc": s['doc'], "page": s['page']} for s in selected] + }, + "latency_ms_total": total_ms, + "latency_ms_llm": llm_latency_ms, + "openai": { + "prompt_tokens": prompt_toks, + "completion_tokens": completion_toks, + "cost_usd": cost_usd + } if use_llm else None + } + _safe_write_jsonl(LOG_PATH, record) + return final + +def rag_chat_fn(message, history, top_k, n_sentences, include_passages, + use_llm, model_name, temperature, strict_quotes_only, + w_tfidf, w_bm25, w_emb): + if not message or not message.strip(): + return "Ask a literature question (e.g., *How does CNT length affect gauge factor?*)" + try: + return rag_reply( + question=message, + k=int(top_k), + n_sentences=int(n_sentences), + include_passages=bool(include_passages), + use_llm=bool(use_llm), + model=(model_name or None), + temperature=float(temperature), + strict_quotes_only=bool(strict_quotes_only), + w_tfidf=float(w_tfidf), + w_bm25=float(w_bm25), + w_emb=float(w_emb), + ) + except Exception as e: + return f"RAG error: {e}" + +# ========================= UI (science-oriented styling) ========================= +CSS = """ +/* Science-oriented: crisp contrast + readable numerics */ +* {font-family: ui-sans-serif, system-ui, -apple-system, 'Segoe UI', Roboto, 'Helvetica Neue', Arial;} +.gradio-container { + background: linear-gradient(135deg, #0b1020 0%, #0c2b1a 60%, #0a2b4d 100%) !important; +} +.card {background: rgba(255,255,255,0.06) !important; border: 1px solid rgba(255,255,255,0.14); border-radius: 12px;} +label {color: #e8f7ff !important; text-shadow: 0 1px 0 rgba(0,0,0,0.35); cursor: pointer;} +input[type="number"] {font-family: ui-monospace, SFMono-Regular, Menlo, Monaco, Consolas, "Liberation Mono", monospace;} + +/* Checkbox clickability fixes */ +input[type="checkbox"], .gr-checkbox, .gr-checkbox > * { pointer-events: auto !important; } +.gr-checkbox label, .gr-check-radio label { pointer-events: auto !important; cursor: pointer; } +#rag-tab input[type="checkbox"] { accent-color: #60a5fa !important; } + +/* RAG tab styling */ +#rag-tab .block, #rag-tab .group, #rag-tab .accordion { + background: linear-gradient(160deg, #1f2937 0%, #14532d 55%, #0b3b68 100%) !important; + border-radius: 12px; + border: 1px solid rgba(255,255,255,0.14); +} +#rag-tab input, #rag-tab textarea, #rag-tab select, #rag-tab .scroll-hide, #rag-tab .chatbot textarea { + background: rgba(17, 24, 39, 0.85) !important; + border: 1px solid #60a5fa !important; + color: #e5f2ff !important; +} +#rag-tab input[type="range"] { accent-color: #22c55e !important; } +#rag-tab button { border-radius: 10px !important; font-weight: 600 !important; } +#rag-tab .chatbot { + background: rgba(15, 23, 42, 0.6) !important; + border: 1px solid rgba(148, 163, 184, 0.35) !important; +} +#rag-tab .message.user { + background: rgba(34, 197, 94, 0.15) !important; + border-left: 3px solid #22c55e !important; +} +#rag-tab .message.bot { + background: rgba(59, 130, 246, 0.15) !important; + border-left: 3px solid #60a5fa !important; + color: #eef6ff !important; +} + +/* Evaluate tab dark/high-contrast styling */ +#eval-tab .block, #eval-tab .group, #eval-tab .accordion { + background: linear-gradient(165deg, #0a0f1f 0%, #0d1a31 60%, #0a1c2e 100%) !important; + border-radius: 12px; + border: 1px solid rgba(139, 197, 255, 0.28); +} +#eval-tab label, #eval-tab .markdown, #eval-tab .prose, #eval-tab p, #eval-tab span { + color: #e6f2ff !important; +} +#eval-tab input, #eval-tab .gr-file, #eval-tab .scroll-hide, #eval-tab textarea, #eval-tab select { + background: rgba(8, 13, 26, 0.9) !important; + border: 1px solid #3b82f6 !important; + color: #dbeafe !important; +} +#eval-tab input[type="range"] { accent-color: #22c55e !important; } +#eval-tab button { + border-radius: 10px !important; + font-weight: 700 !important; + background: #0ea5e9 !important; + color: #001321 !important; + border: 1px solid #7dd3fc !important; +} +#eval-tab .gr-json, #eval-tab .markdown pre, #eval-tab .markdown code { + background: rgba(2, 6, 23, 0.85) !important; + color: #e2e8f0 !important; + border: 1px solid rgba(148, 163, 184, 0.3) !important; + border-radius: 10px !important; +} + +/* Predictor output emphasis */ +#pred-out .wrap { font-size: 20px; font-weight: 700; color: #ecfdf5; } + +/* Tab header: darker blue theme for all tabs */ +.gradio-container .tab-nav button[role="tab"] { + background: #0b1b34 !important; + color: #cfe6ff !important; + border: 1px solid #1e3a8a !important; +} +.gradio-container .tab-nav button[role="tab"][aria-selected="true"] { + background: #0e2a57 !important; + color: #e0f2fe !important; + border-color: #3b82f6 !important; +} + +/* Evaluate tab: enforce dark-blue text for labels/marks */ +#eval-tab .label, +#eval-tab label, +#eval-tab .gr-slider .label, +#eval-tab .wrap .label, +#eval-tab .prose, +#eval-tab .markdown, +#eval-tab p, +#eval-tab span { + color: #cfe6ff !important; +} + +/* Target the specific k-slider label strongly */ +#k-slider .label, +#k-slider label, +#k-slider .wrap .label { + color: #cfe6ff !important; + text-shadow: 0 1px 0 rgba(0,0,0,0.35); +} + +/* Slider track/thumb (dark blue gradient + blue thumb) */ +#eval-tab input[type="range"] { + accent-color: #3b82f6 !important; +} + +/* WebKit */ +#eval-tab input[type="range"]::-webkit-slider-runnable-track { + height: 6px; + background: linear-gradient(90deg, #0b3b68, #1e3a8a); + border-radius: 4px; +} +#eval-tab input[type="range"]::-webkit-slider-thumb { + -webkit-appearance: none; + appearance: none; + margin-top: -6px; + width: 18px; height: 18px; + background: #1d4ed8; + border: 1px solid #60a5fa; + border-radius: 50%; +} + +/* Firefox */ +#eval-tab input[type="range"]::-moz-range-track { + height: 6px; + background: linear-gradient(90deg, #0b3b68, #1e3a8a); + border-radius: 4px; +} +#eval-tab input[type="range"]::-moz-range-thumb { + width: 18px; height: 18px; + background: #1d4ed8; + border: 1px solid #60a5fa; + border-radius: 50%; +} + +/* ======== PATCH: Style the File + JSON outputs by ID ======== */ +#perq-file, #agg-file { + background: rgba(8, 13, 26, 0.9) !important; + border: 1px solid #3b82f6 !important; + border-radius: 12px !important; + padding: 8px !important; +} +#perq-file * , #agg-file * { color: #dbeafe !important; } +#perq-file a, #agg-file a { + background: #0e2a57 !important; + color: #e0f2fe !important; + border: 1px solid #60a5fa !important; + border-radius: 8px !important; + padding: 6px 10px !important; + text-decoration: none !important; +} +#perq-file a:hover, #agg-file a:hover { + background: #10356f !important; + border-color: #93c5fd !important; +} +/* File preview wrappers (covers multiple Gradio render modes) */ +#perq-file .file-preview, #agg-file .file-preview, +#perq-file .wrap, #agg-file .wrap { + background: rgba(2, 6, 23, 0.85) !important; + border-radius: 10px !important; + border: 1px solid rgba(148,163,184,.3) !important; +} + +/* JSON output: dark panel + readable text */ +#agg-json { + background: rgba(2, 6, 23, 0.85) !important; + border: 1px solid rgba(148,163,184,.35) !important; + border-radius: 12px !important; + padding: 8px !important; +} +#agg-json *, #agg-json .json, #agg-json .wrap { color: #e6f2ff !important; } +#agg-json pre, #agg-json code { + background: rgba(4, 10, 24, 0.9) !important; + color: #e2e8f0 !important; + border: 1px solid rgba(148,163,184,.35) !important; + border-radius: 10px !important; +} +/* Tree/overflow modes */ +#agg-json [data-testid="json-tree"], +#agg-json [role="tree"], +#agg-json .overflow-auto { + background: rgba(4, 10, 24, 0.9) !important; + color: #e6f2ff !important; + border-radius: 10px !important; + border: 1px solid rgba(148,163,184,.35) !important; +} + +/* Eval log markdown */ +#eval-log, #eval-log * { color: #cfe6ff !important; } +#eval-log pre, #eval-log code { + background: rgba(2, 6, 23, 0.85) !important; + color: #e2e8f0 !important; + border: 1px solid rgba(148,163,184,.3) !important; + border-radius: 10px !important; +} + +/* When Evaluate tab is active and JS has added .eval-active, bump contrast subtly */ +#eval-tab.eval-active .block, +#eval-tab.eval-active .group { + border-color: #60a5fa !important; +} +#eval-tab.eval-active .label { + color: #e6f2ff !important; +} + +/* --- THE UNIVERSAL DROPDOWN OVERRIDE --- */ + +/* 1. All boxes show white text on the dark background */ +#filler-dropdown .single-select, #filler-dropdown input, +#dim-dropdown .single-select, #dim-dropdown input, +#dim2-dropdown .single-select, #dim2-dropdown input, +#current-dropdown .single-select, #current-dropdown input { + color: #ffffff !important; + -webkit-text-fill-color: #ffffff !important; +} + +/* 2. All dropdown menus (the pop-outs) have a white background */ +#filler-dropdown .options, +#dim-dropdown .options, +#dim2-dropdown .options, +#current-dropdown .options { + background-color: #ffffff !important; +} + +/* 3. All items in the lists are forced to PURE BLACK */ +#filler-dropdown .item, #filler-dropdown .item span, +#dim-dropdown .item, #dim-dropdown .item span, +#dim2-dropdown .item, #dim2-dropdown .item span, +#current-dropdown .item, #current-dropdown .item span, +.gr-dropdown .options .item, .gr-dropdown .options .item * { + color: #000000 !important; + -webkit-text-fill-color: #000000 !important; +} + +/* 4. Hover effect for all dropdowns */ +.gr-dropdown .item:hover { + background-color: #dbeafe !important; +} + +""" + +theme = gr.themes.Soft( + primary_hue="blue", + neutral_hue="green" +).set( + body_background_fill="#0b1020", + body_text_color="#e0f2fe", + input_background_fill="#0f172a", + input_border_color="#1e40af", + button_primary_background_fill="#2563eb", + button_primary_text_color="#ffffff", + button_secondary_background_fill="#14532d", + button_secondary_text_color="#ecfdf5", +) + +with gr.Blocks(css=CSS, theme=theme, fill_height=True) as demo: + # Optional: JS to toggle .eval-active when Evaluate tab selected + gr.HTML(""" + + """) + + gr.Markdown( + "

Self-Sensing Concrete Assistant

" + "

" + "Left: ML prediction for Stress Gauge Factor (original scale, MPa-1). " + "Right: Literature Q&A via Hybrid RAG (BM25 + TF-IDF + optional dense) with MMR sentence selection. " + "Answers cite short document codes (e.g., S71, S92)." + "

" + ) + + with gr.Tabs(): + # ------------------------- Predictor Tab ------------------------- + with gr.Tab("🔮 Predict Gauge Factor (XGB)"): + with gr.Row(): + with gr.Column(scale=7): + with gr.Accordion("Primary conductive filler", open=True, elem_classes=["card"]): + f1_type = gr.Dropdown(TYPE_CHOICES,label="Filler 1 Type *", value="CNT", allow_custom_value=True, elem_id="filler-dropdown") + f1_diam = gr.Number(label="Filler 1 Diameter (µm) *") + f1_len = gr.Number(label="Filler 1 Length (mm) *") + cf_conc = gr.Number(label=f"{CF_COL} *", info="Weight percent of total binder") + f1_dim = gr.Dropdown(DIM_CHOICES, value=CANON_NA, label="Filler 1 Dimensionality *",elem_id="dim-dropdown") + + with gr.Accordion("Secondary filler (optional)", open=False, elem_classes=["card"]): + f2_type = gr.Textbox(label="Filler 2 Type", placeholder="Optional") + f2_diam = gr.Number(label="Filler 2 Diameter (µm)") + f2_len = gr.Number(label="Filler 2 Length (mm)") + f2_dim = gr.Dropdown(DIM_CHOICES, value=CANON_NA, label="Filler 2 Dimensionality", elem_id="dim2-dropdown") + with gr.Accordion("Mix design & specimen", open=False, elem_classes=["card"]): + spec_vol = gr.Number(label="Specimen Volume (mm3) *") + probe_cnt = gr.Number(label="Probe Count *") + probe_mat = gr.Textbox(label="Probe Material *", placeholder="e.g., Copper, Silver paste") + wb = gr.Number(label="W/B *") + sb = gr.Number(label="S/B *") + gauge_len = gr.Number(label="Gauge Length (mm) *") + curing = gr.Textbox(label="Curing Condition *", placeholder="e.g., 28d water, 20°C") + n_fillers = gr.Number(label="Number of Fillers *") + + with gr.Accordion("Processing", open=False, elem_classes=["card"]): + dry_temp = gr.Number(label="Drying Temperature (°C)") + dry_hrs = gr.Number(label="Drying Duration (hr)") + + with gr.Accordion("Mechanical & electrical loading", open=False, elem_classes=["card"]): + load_rate = gr.Number(label="Loading Rate (MPa/s)") + E_mod = gr.Number(label="Modulus of Elasticity (GPa) *") + current = gr.Dropdown(CURRENT_CHOICES, value=CANON_NA, label="Current Type", elem_id="current-dropdown") + voltage = gr.Number(label="Applied Voltage (V)") + + with gr.Column(scale=5): + with gr.Group(elem_classes=["card"]): + out_pred = gr.Number(label="Predicted Stress GF (MPa-1)", value=0.0, precision=6, elem_id="pred-out") + gr.Markdown(f"{MODEL_STATUS}") + with gr.Row(): + btn_pred = gr.Button("Predict", variant="primary") + btn_clear = gr.Button("Clear") + btn_demo = gr.Button("Fill Example") + + with gr.Accordion("About this model", open=False, elem_classes=["card"]): + gr.Markdown( + "- Pipeline: ColumnTransformer → (RobustScaler + OneHot) → XGBoost\n" + "- Target: Stress GF (MPa-1) on original scale (model may train on log1p; saved flag used at inference).\n" + "- Missing values are safely imputed per-feature.\n" + "- Trained columns:\n" + f" `{', '.join(MAIN_VARIABLES)}`", + elem_classes=["prose"] + ) + + inputs_in_order = [ + f1_type, f1_diam, f1_len, cf_conc, + f1_dim, f2_type, f2_diam, f2_len, + f2_dim, spec_vol, probe_cnt, probe_mat, + wb, sb, gauge_len, curing, n_fillers, + dry_temp, dry_hrs, load_rate, + E_mod, current, voltage + ] + + def _predict_wrapper(*vals): + data = {k: v for k, v in zip(MAIN_VARIABLES, vals)} + return predict_fn(**data) + + btn_pred.click(_predict_wrapper, inputs=inputs_in_order, outputs=out_pred) + btn_clear.click(lambda: _clear_all(), inputs=None, outputs=inputs_in_order).then(lambda: 0.0, outputs=out_pred) + btn_demo.click(lambda: _fill_example(), inputs=None, outputs=inputs_in_order) + + # ------------------------- Literature Tab ------------------------- + with gr.Tab("📚 Ask the Literature (Hybrid RAG + MMR)", elem_id="rag-tab"): + pdf_count = len(list(LOCAL_PDF_DIR.glob("**/*.pdf"))) + gr.Markdown( + f"Using local folder papers/ — **{pdf_count} PDF(s)** indexed. " + "Upload more PDFs and reload the Space to expand coverage. " + "Answers cite short document codes such as S71, S92." + ) + with gr.Row(): + top_k = gr.Slider(5, 12, value=8, step=1, label="Top-K chunks") + n_sentences = gr.Slider(2, 6, value=4, step=1, label="Answer length (sentences)") + include_passages = gr.Checkbox(value=False, label="Include supporting passages", interactive=True) + + with gr.Accordion("Retriever weights (advanced)", open=False): + w_tfidf = gr.Slider(0.0, 1.0, value=W_TFIDF_DEFAULT, step=0.05, label="TF-IDF weight") + w_bm25 = gr.Slider(0.0, 1.0, value=W_BM25_DEFAULT, step=0.05, label="BM25 weight") + w_emb = gr.Slider(0.0, 1.0, value=(0.0 if not USE_DENSE else 0.40), step=0.05, label="Dense weight (set 0 if disabled)") + + # Hidden states (unchanged) + state_use_llm = gr.State(LLM_AVAILABLE) + state_model_name = gr.State(os.getenv("OPENAI_MODEL", OPENAI_MODEL)) + state_temperature = gr.State(0.2) + state_strict = gr.State(False) + + gr.ChatInterface( + fn=rag_chat_fn, + additional_inputs=[ + top_k, n_sentences, include_passages, + state_use_llm, state_model_name, state_temperature, state_strict, + w_tfidf, w_bm25, w_emb + ], + title="Literature Q&A", + description="Hybrid retrieval with diversity. Answers carry inline short-code citations (e.g., (S92), (S71))." + ) + + # ====== Evaluate (Gold vs Logs) ====== + with gr.Tab("📏 Evaluate (Gold vs Logs)", elem_id="eval-tab"): + gr.Markdown("Upload your **gold.csv** and compute metrics against the app logs.") + with gr.Row(): + gold_file = gr.File(label="gold.csv", file_types=[".csv"], interactive=True) + k_slider = gr.Slider(3, 12, value=8, step=1, label="k for Hit/Recall/nDCG", elem_id="k-slider") + with gr.Row(): + btn_eval = gr.Button("Compute Metrics", variant="primary") + with gr.Row(): + out_perq = gr.File(label="Per-question metrics (CSV)", elem_id="perq-file") + out_agg = gr.File(label="Aggregate metrics (JSON)", elem_id="agg-file") + out_json = gr.JSON(label="Aggregate summary", elem_id="agg-json") + out_log = gr.Markdown(label="Run log", elem_id="eval-log") + + def _run_eval_inproc(gold_path: str, k: int = 8): + import json as _json + out_dir = str(ARTIFACT_DIR) + logs = str(LOG_PATH) + cmd = [ + sys.executable, "rag_eval_metrics.py", + "--gold_csv", gold_path, + "--logs_jsonl", logs, + "--k", str(k), + "--out_dir", out_dir + ] + try: + p = subprocess.run(cmd, capture_output=True, text=True, check=False) + stdout = p.stdout or "" + stderr = p.stderr or "" + perq = ARTIFACT_DIR / "metrics_per_question.csv" + agg = ARTIFACT_DIR / "metrics_aggregate.json" + agg_json = {} + if agg.exists(): + agg_json = _json.loads(agg.read_text(encoding="utf-8")) + report = "```\n" + (stdout.strip() or "(no stdout)") + ("\n" + stderr.strip() if stderr else "") + "\n```" + return (str(perq) if perq.exists() else None, + str(agg) if agg.exists() else None, + agg_json, + report) + except Exception as e: + return (None, None, {}, f"**Eval error:** {e}") + + def _eval_wrapper(gf, k): + from pathlib import Path as _Path + if gf is None: + default_gold = _Path("gold.csv") + if not default_gold.exists(): + return None, None, {}, "**No gold.csv provided or found in repo root.**" + gold_path = str(default_gold) + else: + gold_path = gf.name + return _run_eval_inproc(gold_path, int(k)) + + btn_eval.click(_eval_wrapper, inputs=[gold_file, k_slider], + outputs=[out_perq, out_agg, out_json, out_log]) + +# ------------- Launch ------------- +if __name__ == "__main__": + # 1. Start the Chatbot (This is what gives you the link) + # If using Gradio: + demo.launch() + + # Or if using Flask: + # app.run(debug=True) + + # 2. Everything below here only runs AFTER the server stops + # (or might not run at all depending on how the server handles the exit) + import os as _os + import pandas as _pd + folder = "papers" + files = sorted(_os.listdir(folder)) if _os.path.exists(folder) else [] + _pd.DataFrame({"doc": files}).to_csv("paper_list.csv", index=False) + print("✅ Saved paper_list.csv with", len(files), "papers") diff --git a/download_logic.py b/download_logic.py new file mode 100644 index 0000000000000000000000000000000000000000..98cab1d715b83fa8b1f8415ac89e990fe00c2b2f --- /dev/null +++ b/download_logic.py @@ -0,0 +1,13 @@ +from huggingface_hub import snapshot_download + +# This pulls the 'brain' (logic) but skips the 'heavy' stuff +# so your Galaxy Book stays fast. +snapshot_download( + repo_id="Inframat-x/ML-Chatbot", + repo_type="space", + local_dir=".", + ignore_patterns=["*.bin", "*.onnx", "*.pkl", "*.joblib", "*.pth"] +) + +print("\n--- Handshake Complete ---") +print("The vibe-code is now local. Check your sidebar!") \ No newline at end of file diff --git a/paper_list.csv b/paper_list.csv new file mode 100644 index 0000000000000000000000000000000000000000..7a3e53b70ec5381991152d75af27229dcdbc5d71 --- /dev/null +++ b/paper_list.csv @@ -0,0 +1,131 @@ +doc +1-s2.0-S095006181732278X-main.pdf +1-s2.0-S0950061820330786-main.pdf +1-s2.0-S1359836816316882-main.pdf +1-s2.0-S2090447920301593-main.pdf +2011-EffectofSpecimenSizeonStaticStrengthandDIFofHSCfromSHPBTest.pdf +Capacitance-based stress self-sensing in cement paste without requiring any admixture.pdf +Capacitive compressive stress self-sensing behavior of cement mortar and its dependence on the thickness.pdf +Carbon fiber reinforced cement improved by using silane-treated carbon fibers.pdf +Development of self-sensing ultra-high-performance concrete using hybrid carbon black and carbon nanofibers.pdf +"Development of sensing concrete Principles, properties and its applications.pdf" +EVALUA~1.PDF +Effect of silane treatment on microstructure of sisal fibers.pdf +"Graphene family (GFMs), carbon nanotubes (CNTs) and carbon black (CB) on smart materials for civil construction.pdf" +Influence of the structures of polycarboxylate superplasticizer on its performance in cement-based materials-A review.pdf +Investigating the synergistic effects of carbon fiber and silica fume on concrete strength and eco-efficiency.pdf +Investigation of 3D Printed Self-Sensing UHPC Composites Using Graphite and Hybrid Carbon Microfibers.pdf +Ozone treatment of carbon fiber for reinforcing cement.pdf +PIEZOE~1.PDF +Performance of silica fume slurry treated recycled aggregate concrete reinforced with carbon fibers.pdf +Piezopermittivity for capacitance-based strain stress sensing.pdf +Review Improving cement-based materials by using silica fume.pdf +Revolutionizing infrastructure The evolving landscape of electricity-based multifunctional concrete from concept to practice.pdf +S1-An-experimental-study-of-self-sensing-concrete-enhanced_2020_Construction-an.pdf +S10-Enhancing-self-stress-sensing-ability-of-smart-ultra-high_2021_Journal-of-Bu.pdf +S100-C~1.PDF +"S11-Environment-Friendly, Self-Sensing Concrete Blended with Byproduct Wastes.pdf" +S12-Hybrid-effects-of-steel-fiber-and-carbon-nanotube-on-s_2018_Construction-and.pdf +S13-Increasing-self-sensing-capability-of-carbon-nanotubes-c_2020_Construction-a.pdf +S14-Influence-of-carbon-nanofiber-content-and-sodium-chloride-_2019_Case-Studies.pdf +S15-Influence-of-water-ingress-on-the-electrical-properties-_2021_Journal-of-Bui.pdf +S16-Investigations-on-scalable-fabrication-procedures-for-sel_2016_Cement-and-Co.pdf +S17-Cross tension and compression loading and large-scale testing of strain and damage sensing smart concrete.pdf +S18-Nano graphite platelets-enabled piezoresistive cementitious composites for structural health monitoring.pdf +S19-Self-sensing-piezoresistive-cement-composite-loaded_2017_Cement-and-Concrete.pdf +S2-Characterization-of-smart-brass-fiber-reinforced-co_2020_Construction-and-Bu.pdf +S20-IN~1.PDF +"S21-Mechanical, electrical and self-sensing properties of cementitious mortars containing short carbon fibers.pdf" +S22-Improved strain sensing properties of cement-based sensors through enhanced carbon nanotube dispersion.pdf +S23-Increasing self-sensing capability of carbon nanotubes cement-based materials by simultaneous addition of Ni nanofibers.pdf +S24-Multifunctional-self-sensing-and-ductile-cementit_2019_Cement-and-Concrete-R.pdf +S25-Self-sensing-capability-of-ultra-high-performance-concr_2018_Sensors-and-Act.pdf +S26-TE~1.PDF +S27-Effect of aspect ratio on strain sensing capacity of carbon fiber reinforced cement composites.pdf +S28-Smart Graphite–Cement Composites with Low Percolation Threshold.pdf +S29-Hybrid Carbon Microfibers-Graphite Fillers for Piezoresistive Cementitious Composites.pdf +S3-Effect of characteristics of assembly unit of CNTNCB composite fillers on properties of smart cement-based materials.pdf +S30-Smart Graphite–Cement Composite for Roadway-Integrated Weigh-In-Motion Sensing.pdf +S31-Electrical and piezoresistive properties of carbon nanofiber cement mortar under different temperatures and water contents.pdf +S32-Self-stress-sensing-smart-concrete-containing-fine-stee_2019_Construction-an.pdf +S33-IN~1.PDF +S34-Self-sensing-ultra-high-performance-concrete-fo_2021_Sensors-and-Actuators-A.pdf +S35-EL~1.PDF +S36-Piezoresistivity enhancement of functional carbon black filled cement-based sensor using polypropylene fibre.pdf +S37-Test and Study on Electrical Property of Conductive Concrete.pdf +S38 - Electrical-resistance-based Sensing of Impact Damage in Carbon Fiber Reinforced Cement-based Materials.pdf +S39 - Electrical conductivity of self-monitoring CFRC.pdf +S4-Effect-of-steel-fiber-and-carbon-black-on-the-self-s_2019_Construction-and-B.pdf +S40 - Resistance Changes during Compression of Carbon Fiber Cement COmposites.pdf +S41 - Electrical-resistance-based damage self-sensing in carbon fiber reinforced cement.pdf +S42-SE~1.PDF +S43 - the 100th anniversary of the four-point probe technique the role of probe geometries in isotropic andanisotropic systems.pdf +S44-Sensing performance of engineered cementitious composites in different application forms.pdf +S45-Insitu synthesizing carbon nanotubes on cement to develop self-sensing cementitious composites.pdf +S46-SE~1.PDF +S47-The applicability of shungite as an electrically conductive additive in cement composites.pdf +S48-Self-sensing properties and piezoresistive effect of high ductility cementitious composite.pdf +S49-ME~1.PDF +S5-Effects-of-carbon-nanomaterial-type-and-amount-on-self-sensing-_2019_Measure.pdf +S50-IM~1.PDF +S51-Electrical and piezoresistive properties of cement composites with carbon nanomaterials.pdf +"S52-Influences of (MCNT) fraction, moisture, stressstrain level on the electrical properties of MCNT of cement-based composites.pdf" +S53-CA~1.PDF +S54-Carbon Nanofibers Grown in CaO for Self-Sensing in Mortar.pdf +S55-Electro-mechanical self-sensing response of ultra-high-performance fiber-reinforced concrete in tension.pdf +S55-Nanocarbon black-based ultra-high-performance concrete (UHPC) with self-strain sensing capability.pdf +S56-Self-sensing cementitious composites incorporated with botryoid hybrid nano-carbon materials for smart infrastructures.pdf +S57-IN~1.PDF +S58-DE~1.PDF +S59-Modifying self-sensing cement-based composites through multiscale composition.pdf +S6-Electrically conductive behaviors and mechanisms of short-cut super-fine stainless wire reinforced reactive powder concrete.pdf +S60-Study on self-sensing capabilities of smart cements filled with graphene oxide under dynamic cyclic loading.pdf +"S61-Piezoresistivity, mechanisms and model of cement-based materials with CNT_NCB composite fillers.pdf" +S62-MU~1.PDF +S63-Piezoresistive properties of cement composites with expanded graphite.pdf +"S64-Electrical Properties of Cement-Based Composites with Carbon Nanotubes, Graphene, and Graphite Nanofibers.pdf" +S65-AN~1.PDF +S66-Experimental Investigation of the Piezoresistive Properties of Cement Composites with Hybrid Carbon Fibers and Nanotubes.pdf +S67-Strain and damage sensing properties on multifunctional cement composites with CNF admixture.pdf +S68-EF~1.PDF +S69-Cement-based sensors with carbon fibers and carbon nanotubes for piezoresistive sensing.pdf +S7-Electrical characteristics and pressure-sensitive response measurements of carboxyl MWNT_cement composites.pdf +S70-EV~1.PDF +S71-Enhanced sensing performance of cement-based composites achieved via magnetically aligned nickel particle network.pdf +S72-Anisotropic electrical and piezoresistive sensing properties of cement-based sensors with aligned carbon fibers.pdf +S73-Development of self-sensing cement-based sensor using recycled fine waste glass aggregates coated with carbon nanotube.pdf +S74-Strain sensitivity of steel-fiber-reinforced industrial smart concrete.pdf +S75-SE~1.PDF +S76-Strain-sensing characteristics of self-consolidating concrete with micro-carbon fibre.pdf +S77-SE~1.PDF +S78-Mechanical and self-sensing properties of concrete reinforced with carbon nanofibres.pdf +S79-Carbon nanotube cement-based transducers for dynamic sensing of strain.pdf +S8-Electrically-cured-ultra-high-performance-concrete--UHPC--embe_2020_Material.pdf +S80-MA~1.PDF +S81-Piezoresistive properties of ultra-high-performance fiber-reinforced concrete incorporating few-layer graphene.pdf +S82-SY~1.PDF +S83-Effect of compressive strain on electrical resistivity of carbon black-filled cement-based composites.pdf +S84-TA~1.PDF +S85-Performance of cement-based sensors with CNT for strain sensing.pdf +S86-EL~1.PDF +S87-EL~1.PDF +S88-ST~1.PDF +S89-Piezoresistivity of carbon fiber graphite cement-based composites with CCCW.pdf +S9-Electro-mechanical-self-sensing-response-of-ultra-high-_2018_Composites-Part.pdf +S90-EX~1.PDF +S91-A comparative study on the influences of CNT and GNP on the piezoresistivity of cement composites.pdf +S92-Research-on-the-self-sensing-and-mechanical-properties-of_2021_Cement-and-Co.pdf +S93-Enhanced effects of carbon-based conductive materials on the piezoresistive characteristics of cementitious composites.pdf +S94-The Utilization of Pearson’s Method to Analyze Piezoresistive Effect in Self-Sensing Cement Composite with Graphite.pdf +S95-SE~1.PDF +S96-EL~1.PDF +S97-Self-sensing GFRP-reinforced concrete beams containing carbon nanotube-nano carbon black composite fillers.pdf +S98-MI~1.PDF +S99-Commercial and recycled carbon-based fillers and fibers for self-sensing cement-based composites.pdf +Self-sensing enhancement in smart ultra-high performance concrete composites via multi-scale carbon black.pdf +"Self-sensing performance of cementitious composites with functional fillers at macro, micro and nano scales.pdf" +Self‐Sensing Cementitious Composites with Hierarchical Carbon Fiber‐Carbon Nanotube Composite Fillers.pdf +Silane treatment of bagasse fiber for reinforcement of cementitious composites.pdf +Silane-treated carbon fiber for reinforcing cement.pdf +The effect of silane surface treatment on the mechanical properties of UHPFRC.pdf +document.pdf diff --git a/papers/1-s2.0-S095006181732278X-main.pdf b/papers/1-s2.0-S095006181732278X-main.pdf new file mode 100644 index 0000000000000000000000000000000000000000..23873262db57fe7b408d8b5867b71ca8596f3e83 --- /dev/null +++ b/papers/1-s2.0-S095006181732278X-main.pdf @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e6ac4d8d3c2572eab3e5b721e0520656699b5b2e49e12f51cc52ef41d7ac5e6f +size 2770836 diff --git a/papers/1-s2.0-S0950061820330786-main.pdf b/papers/1-s2.0-S0950061820330786-main.pdf new file mode 100644 index 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0.701547923740148, "score_dense": 0.4087956025663952, "combo_score": 0.6739826181486025}, {"doc": "S17-Cross tension and compression loading and large-scale testing of strain and damage sensing smart concrete.pdf", "page": "?", "score_tfidf": 0.6655686811753331, "score_bm25": 0.3671680772098779, "score_dense": 0.8849731734043732, "combo_score": 0.6638102968773125}, {"doc": "1-s2.0-S2090447920301593-main.pdf", "page": "?", "score_tfidf": 0.8886339821047743, "score_bm25": 0.6855310749255774, "score_dense": 0.3834955073599744, "combo_score": 0.6256477200530952}, {"doc": "S2-Characterization-of-smart-brass-fiber-reinforced-co_2020_Construction-and-Bu.pdf", "page": "?", "score_tfidf": 0.26213070431581836, "score_bm25": 0.48998856253275425, "score_dense": 0.9840270254762131, "combo_score": 0.619246590245057}, {"doc": "S32-Self-stress-sensing-smart-concrete-containing-fine-stee_2019_Construction-an.pdf", "page": "?", "score_tfidf": 0.2748116414810267, "score_bm25": 0.5296382441464794, "score_dense": 0.8987706060064166, "combo_score": 0.6008432080908185}], "latency_ms_retriever": 192}, "output": {"final_answer": "**Answer:** smart concrete (made from the UHPC containing both FSSAs and steel fibers) under compression in comparison with that of smart concretes made from the UHPCs containing other fillers and (2) to investigate the self-stress sensing capacity of a smart concrete anchorage, made from the UHPC containing both FSSAs and steel fibers, for monitoring the level of prestressing stress. (S32) infrastructure is built to support the growing population, it is essential that it is smart infrastructure to improve the lives Therefore, infrastructures are at the beginning of tures age and slowly deteriorate. (S59) This optimal mix was used to fabricate the smart composite plate, discussed in what follows. (S30) more smart cities, as the world population increases and more people move to urban environments. (S59)\n\n**Citations:** S30; S59; S26; S17; 1", "used_sentences": [{"sent": "smart concrete (made from the UHPC containing both FSSAs and steel fibers) under compression in comparison with that of smart concretes made from the UHPCs containing other fillers and (2) to investigate the self-stress sensing capacity of a smart concrete anchorage, made from the UHPC containing both FSSAs and steel fibers, for monitoring the level of prestressing stress.", "doc": "S32", "page": "?"}, {"sent": "infrastructure is built to support the growing population, it is essential that it is smart infrastructure to improve the lives Therefore, infrastructures are at the beginning of tures age and slowly deteriorate.", "doc": "S59", "page": "?"}, {"sent": "This optimal mix was used to fabricate the smart composite plate, discussed in what follows.", "doc": "S30", "page": "?"}, {"sent": "more smart cities, as the world population increases and more people move to urban environments.", "doc": "S59", "page": "?"}]}, "latency_ms_total": 888, "latency_ms_llm": null, "openai": null} +{"run_id": "2a85d7bb-da8c-4710-ad2c-7e6aa024f641", "ts": 1770997604572, "inputs": {"question": "what is smart concrete", "top_k": 8, "n_sentences": 4, "w_tfidf": 0.3, "w_bm25": 0.3, "w_emb": 0.4, "use_llm": false, "model": "gpt-5", "temperature": 0.2}, "retrieval": {"hits": [{"doc": "S17-Cross tension and compression loading and large-scale testing of strain and damage sensing smart concrete.pdf", "page": "?", "score_tfidf": 0.7812515257335579, "score_bm25": 0.7352663039823301, "score_dense": 0.8767695341602232, "combo_score": 0.8056631625788557}, {"doc": "S74-Strain sensitivity of steel-fiber-reinforced industrial smart concrete.pdf", "page": "?", "score_tfidf": 0.7180607005519931, "score_bm25": 0.6877152952515094, "score_dense": 0.945573646308848, "combo_score": 0.79996225726459}, {"doc": "S17-Cross tension and compression loading and large-scale testing of strain and damage sensing smart concrete.pdf", "page": "?", "score_tfidf": 0.6496146887635347, "score_bm25": 0.6763484673337841, "score_dense": 1.0, "combo_score": 0.7977889468291957}, {"doc": "S2-Characterization-of-smart-brass-fiber-reinforced-co_2020_Construction-and-Bu.pdf", "page": "?", "score_tfidf": 0.7738965578242346, "score_bm25": 0.6927134383580094, "score_dense": 0.8814222037615043, "combo_score": 0.792551880359275}, {"doc": "S2-Characterization-of-smart-brass-fiber-reinforced-co_2020_Construction-and-Bu.pdf", "page": "?", "score_tfidf": 0.7103253005978989, "score_bm25": 0.6959447697763587, "score_dense": 0.9214132211426111, "combo_score": 0.7904463095693218}, {"doc": "S32-Self-stress-sensing-smart-concrete-containing-fine-stee_2019_Construction-an.pdf", "page": "?", "score_tfidf": 0.7179642554332893, "score_bm25": 0.7249796891508764, "score_dense": 0.8798064697010471, "combo_score": 0.7848057712556685}, {"doc": "S17-Cross tension and compression loading and large-scale testing of strain and damage sensing smart concrete.pdf", "page": "?", "score_tfidf": 0.9153664701009494, "score_bm25": 0.5209537951422858, "score_dense": 0.8750282780116994, "combo_score": 0.7809073907776503}, {"doc": "S32-Self-stress-sensing-smart-concrete-containing-fine-stee_2019_Construction-an.pdf", "page": "?", "score_tfidf": 0.7547700812189673, "score_bm25": 0.7115274938964362, "score_dense": 0.8204715448416257, "combo_score": 0.7680778904712713}], "latency_ms_retriever": 384}, "output": {"final_answer": "**Answer:** Smart concrete can be used in the important structures (hospitals, power plants, schools etc.) and in the critical structural elements such as first floor columns. (S17) concrete can keep the cost of smart concrete at competitive levels for The smart concrete can timely detect structural degradation and enable asset management by collect­ ing data for repair and maintenance. (S17) smart concrete (made from the UHPC containing both FSSAs and steel fibers) under compression in comparison with that of smart concretes made from the UHPCs containing other fillers and (2) to investigate the self-stress sensing capacity of a smart concrete anchorage, made from the UHPC containing both FSSAs and steel fibers, for monitoring the level of prestressing stress. (S32) The crack length sensitivity of smart concrete was 1 and crack length and change in electrical resistance of smart concrete had a strong linear relationship. (S2)\n\n**Citations:** S17; S74; S2; S32", "used_sentences": [{"sent": "Smart concrete can be used in the important structures (hospitals, power plants, schools etc.) and in the critical structural elements such as first floor columns.", "doc": "S17", "page": "?"}, {"sent": "concrete can keep the cost of smart concrete at competitive levels for The smart concrete can timely detect structural degradation and enable asset management by collect­ ing data for repair and maintenance.", "doc": "S17", "page": "?"}, {"sent": "smart concrete (made from the UHPC containing both FSSAs and steel fibers) under compression in comparison with that of smart concretes made from the UHPCs containing other fillers and (2) to investigate the self-stress sensing capacity of a smart concrete anchorage, made from the UHPC containing both FSSAs and steel fibers, for monitoring the level of prestressing stress.", "doc": "S32", "page": "?"}, {"sent": "The crack length sensitivity of smart concrete was 1 and crack length and change in electrical resistance of smart concrete had a strong linear relationship.", "doc": "S2", "page": "?"}]}, "latency_ms_total": 705, "latency_ms_llm": null, "openai": null} +{"run_id": "41de8e5a-b695-4346-a034-e9f5800a3e89", "ts": 1771365967079, "inputs": {"question": "How does CNT aspect ratio influence stress gauge factor in cementitious composites?", "top_k": 8, "n_sentences": 4, "w_tfidf": 0.3, "w_bm25": 0.3, "w_emb": 0.4, "use_llm": false, "model": "gpt-5", "temperature": 0.2}, "retrieval": {"hits": [{"doc": "S18-Nano graphite platelets-enabled piezoresistive cementitious composites for structural health monitoring.pdf", "page": "?", "score_tfidf": 1.0, "score_bm25": 0.7794814256275794, "score_dense": 0.8332826939992174, "combo_score": 0.8671575052879608}, {"doc": "S56-Self-sensing cementitious composites incorporated with botryoid hybrid nano-carbon materials for smart infrastructures.pdf", "page": "?", "score_tfidf": 0.5827333666080915, "score_bm25": 0.9521720694653736, "score_dense": 0.9928929853239911, "combo_score": 0.857628824951636}, {"doc": "S82-SY~1.PDF", "page": "?", "score_tfidf": 0.6121307001579496, "score_bm25": 0.9633116527382539, "score_dense": 0.9117923147094122, "combo_score": 0.8373496317526259}, {"doc": "S84-TA~1.PDF", "page": "?", "score_tfidf": 0.77437341842884, "score_bm25": 0.8154877958180937, "score_dense": 0.8295768393098243, "combo_score": 0.8087890999980099}, {"doc": "S82-SY~1.PDF", "page": "?", "score_tfidf": 0.5333269983258244, "score_bm25": 0.8552344241838286, "score_dense": 0.9230234415989417, "combo_score": 0.7857778033924725}, {"doc": "S73-Development of self-sensing cement-based sensor using recycled fine waste glass aggregates coated with carbon nanotube.pdf", "page": "?", "score_tfidf": 0.500479376942504, "score_bm25": 0.8370845217719457, "score_dense": 0.9461316510102153, "combo_score": 0.779721830018421}, {"doc": "S64-Electrical Properties of Cement-Based Composites with Carbon Nanotubes, Graphene, and Graphite Nanofibers.pdf", "page": "?", "score_tfidf": 0.5919524504874675, "score_bm25": 0.8129635639261724, "score_dense": 0.8924387626618611, "combo_score": 0.7784503093888364}, {"doc": "S27-Effect of aspect ratio on strain sensing capacity of carbon fiber reinforced cement composites.pdf", "page": "?", "score_tfidf": 0.5683764285284425, "score_bm25": 0.8795702256398016, "score_dense": 0.8596545285876335, "combo_score": 0.7782458076855266}], "latency_ms_retriever": 111}, "output": {"final_answer": "**Answer:** Copper-nickel or nickel-chrome alloy-based strain gauges have a gauge factor of about 2 [27], which is much smaller than that of the cement composites with In addition, the gauge factor obtained in this study is quite similar to the value obtained in previous studies [12]. (S64) The same is more prominent when the dosage of CNT in the smart composite is in lower bound in Sensitivity of smart cement composites incorporated with pristine MWCNTs at 0.5 wt% is higher than cement paste incorporated with OH-MWCNTs and less than COOH-MWCNTs. (S82) was obtained from the average values of the composites under two stress Overall, the cement mortar modified with CNT-coated waste glass showed excellent piezoresistivity, whose sensitivity was dozens of times higher than that of commercially available strain gauge. (S73) However the gage factor was influenced by the maximum stresses Fiber’s aspect ratio is directly related to the calculated gage factors, which were higher as longer fiber was included. (S27)\n\n**Citations:** S18; S56; S82; S84; S73", "used_sentences": [{"sent": "Copper-nickel or nickel-chrome alloy-based strain gauges have a gauge factor of about 2 [27], which is much smaller than that of the cement composites with In addition, the gauge factor obtained in this study is quite similar to the value obtained in previous studies [12].", "doc": "S64", "page": "?"}, {"sent": "The same is more prominent when the dosage of CNT in the smart composite is in lower bound in Sensitivity of smart cement composites incorporated with pristine MWCNTs at 0.5 wt% is higher than cement paste incorporated with OH-MWCNTs and less than COOH-MWCNTs.", "doc": "S82", "page": "?"}, {"sent": "was obtained from the average values of the composites under two stress Overall, the cement mortar modified with CNT-coated waste glass showed excellent piezoresistivity, whose sensitivity was dozens of times higher than that of commercially available strain gauge.", "doc": "S73", "page": "?"}, {"sent": "However the gage factor was influenced by the maximum stresses Fiber’s aspect ratio is directly related to the calculated gage factors, which were higher as longer fiber was included.", "doc": "S27", "page": "?"}]}, "latency_ms_total": 350, "latency_ms_llm": null, "openai": null} +{"run_id": "a8cd2714-ba1c-4c50-945c-8818c3214a57", "ts": 1771368325807, "inputs": {"question": "What conductive filler type typically yields the highest gauge factor in cement-based composites?", "top_k": 8, "n_sentences": 4, "w_tfidf": 0.3, "w_bm25": 0.3, "w_emb": 0.4, "use_llm": false, "model": "gpt-5", "temperature": 0.2}, "retrieval": {"hits": [{"doc": "S82-SY~1.PDF", "page": "?", "score_tfidf": 0.9240008154272813, "score_bm25": 0.9058841901194752, "score_dense": 0.8167872813418199, "combo_score": 0.8756804142007549}, {"doc": "S18-Nano graphite platelets-enabled piezoresistive cementitious composites for structural health monitoring.pdf", "page": "?", "score_tfidf": 0.8395026805096776, "score_bm25": 0.814694884457461, "score_dense": 0.9445213507651488, "combo_score": 0.8740678097962011}, {"doc": "S55-Electro-mechanical self-sensing response of ultra-high-performance fiber-reinforced concrete in tension.pdf", "page": "?", "score_tfidf": 1.0, "score_bm25": 1.0, "score_dense": 0.6644415097846281, "combo_score": 0.8657766039138513}, {"doc": "S9-Electro-mechanical-self-sensing-response-of-ultra-high-_2018_Composites-Part.pdf", "page": "?", "score_tfidf": 1.0, "score_bm25": 1.0, "score_dense": 0.6644415097846281, "combo_score": 0.8657766039138513}, {"doc": "S82-SY~1.PDF", "page": "?", "score_tfidf": 0.7695538381891827, "score_bm25": 0.9075974860667206, "score_dense": 0.8938054098991277, "combo_score": 0.8606675612364221}, {"doc": "S68-EF~1.PDF", "page": "?", "score_tfidf": 0.7905695293702641, "score_bm25": 0.9550429518584995, "score_dense": 0.7471749173138648, "combo_score": 0.822553711294175}, {"doc": "Revolutionizing infrastructure The evolving landscape of electricity-based multifunctional concrete from concept to practice.pdf", "page": "?", "score_tfidf": 0.6715129139774919, "score_bm25": 0.8176725081731818, "score_dense": 0.8958990980313201, "combo_score": 0.8051152658577301}, {"doc": "S34-Self-sensing-ultra-high-performance-concrete-fo_2021_Sensors-and-Actuators-A.pdf", "page": "?", "score_tfidf": 0.7597570291002825, "score_bm25": 0.826967011443848, "score_dense": 0.7791221580219055, "combo_score": 0.7876660753720014}], "latency_ms_retriever": 268}, "output": {"final_answer": "**Answer:** The highest gauge factor of the cementitious composites filled with 5 vol% of NGPs is 156, which is far more than 2–3 of metal foil strain gauge. (S18) The highest gauge factor of 451.26 is obtained from cement based smart nanocomposites with 0.5 wt% of COOH-MWCNTs fabricated with The gauge factor of smart cement composites reported in literature is presented in Table 5. (S82) results indicated that the electrical resistance of the brass-coated steel fiber reinforced cement mortar gradually increases with the increase of the splitting load, and obtained that the highest gauge factor of cement-based composite is 5195, which is nearly 2600 times higher than that of metal strain gages with the gage factor of 2. (S34) repeatability on piezoresistive response, highest gauge factor, highest stress sensitivity and good compressive strength were observed in composites containing carbon blacks with the lowest structure (125 cm3/100 g) and the highest resistivity (3.3–3.9 Ω (3) The increase in CBN aggregates structure, surface area and con­ ductivity improved the conductive network inside the composite and reduced its internal capacitance. (S68)\n\n**Citations:** [S82](/file=papers/S82-SY~1.PDF); [S18](/file=papers/S18-Nano%20graphite%20platelets-enabled%20piezoresistive%20cementitious%20composites%20for%20structural%20health%20monitoring.pdf); [S55](/file=papers/S55-Electro-mechanical%20self-sensing%20response%20of%20ultra-high-performance%20fiber-reinforced%20concrete%20in%20tension.pdf); [S9](/file=papers/S9-Electro-mechanical-self-sensing-response-of-ultra-high-_2018_Composites-Part.pdf); [S68](/file=papers/S68-EF~1.PDF)", "used_sentences": [{"sent": "The highest gauge factor of the cementitious composites filled with 5 vol% of NGPs is 156, which is far more than 2–3 of metal foil strain gauge.", "doc": "S18", "page": "?"}, {"sent": "The highest gauge factor of 451.26 is obtained from cement based smart nanocomposites with 0.5 wt% of COOH-MWCNTs fabricated with The gauge factor of smart cement composites reported in literature is presented in Table 5.", "doc": "S82", "page": "?"}, {"sent": "results indicated that the electrical resistance of the brass-coated steel fiber reinforced cement mortar gradually increases with the increase of the splitting load, and obtained that the highest gauge factor of cement-based composite is 5195, which is nearly 2600 times higher than that of metal strain gages with the gage factor of 2.", "doc": "S34", "page": "?"}, {"sent": "repeatability on piezoresistive response, highest gauge factor, highest stress sensitivity and good compressive strength were observed in composites containing carbon blacks with the lowest structure (125 cm3/100 g) and the highest resistivity (3.3–3.9 Ω (3) The increase in CBN aggregates structure, surface area and con­ ductivity improved the conductive network inside the composite and reduced its internal capacitance.", "doc": "S68", "page": "?"}]}, "latency_ms_total": 1051, "latency_ms_llm": null, "openai": null} +{"run_id": "f59b7a00-d1eb-42bc-8579-fd65acd682b6", "ts": 1771368900253, "inputs": {"question": "What conductive filler type typically yields the highest gauge factor in cement-based\ncomposites?", "top_k": 8, "n_sentences": 4, "w_tfidf": 0.3, "w_bm25": 0.3, "w_emb": 0.4, "use_llm": false, "model": "gpt-5", "temperature": 0.2}, "retrieval": {"hits": [{"doc": "S82-SY~1.PDF", "page": "?", "score_tfidf": 0.9240008154272813, "score_bm25": 0.9058841901194752, "score_dense": 0.8167872813418199, "combo_score": 0.8756804142007549}, {"doc": "S18-Nano graphite platelets-enabled piezoresistive cementitious composites for structural health monitoring.pdf", "page": "?", "score_tfidf": 0.8395026805096776, "score_bm25": 0.814694884457461, "score_dense": 0.9445213507651488, "combo_score": 0.8740678097962011}, {"doc": "S55-Electro-mechanical self-sensing response of ultra-high-performance fiber-reinforced concrete in tension.pdf", "page": "?", "score_tfidf": 1.0, "score_bm25": 1.0, "score_dense": 0.6644415097846281, "combo_score": 0.8657766039138513}, {"doc": "S9-Electro-mechanical-self-sensing-response-of-ultra-high-_2018_Composites-Part.pdf", "page": "?", "score_tfidf": 1.0, "score_bm25": 1.0, "score_dense": 0.6644415097846281, "combo_score": 0.8657766039138513}, {"doc": "S82-SY~1.PDF", "page": "?", "score_tfidf": 0.7695538381891827, "score_bm25": 0.9075974860667206, "score_dense": 0.8938054098991277, "combo_score": 0.8606675612364221}, {"doc": "S68-EF~1.PDF", "page": "?", "score_tfidf": 0.7905695293702641, "score_bm25": 0.9550429518584995, "score_dense": 0.7471749173138648, "combo_score": 0.822553711294175}, {"doc": "Revolutionizing infrastructure The evolving landscape of electricity-based multifunctional concrete from concept to practice.pdf", "page": "?", "score_tfidf": 0.6715129139774919, "score_bm25": 0.8176725081731818, "score_dense": 0.8958990980313201, "combo_score": 0.8051152658577301}, {"doc": "S34-Self-sensing-ultra-high-performance-concrete-fo_2021_Sensors-and-Actuators-A.pdf", "page": "?", "score_tfidf": 0.7597570291002825, "score_bm25": 0.826967011443848, "score_dense": 0.7791221580219055, "combo_score": 0.7876660753720014}], "latency_ms_retriever": 285}, "output": {"final_answer": "**Answer:** The highest gauge factor of the cementitious composites filled with 5 vol% of NGPs is 156, which is far more than 2–3 of metal foil strain gauge. (S18) The highest gauge factor of 451.26 is obtained from cement based smart nanocomposites with 0.5 wt% of COOH-MWCNTs fabricated with The gauge factor of smart cement composites reported in literature is presented in Table 5. (S82) results indicated that the electrical resistance of the brass-coated steel fiber reinforced cement mortar gradually increases with the increase of the splitting load, and obtained that the highest gauge factor of cement-based composite is 5195, which is nearly 2600 times higher than that of metal strain gages with the gage factor of 2. (S34) repeatability on piezoresistive response, highest gauge factor, highest stress sensitivity and good compressive strength were observed in composites containing carbon blacks with the lowest structure (125 cm3/100 g) and the highest resistivity (3.3–3.9 Ω (3) The increase in CBN aggregates structure, surface area and con­ ductivity improved the conductive network inside the composite and reduced its internal capacitance. (S68)\n\n**Citations:** [S82](/file=papers/S82-SY~1.PDF); [S18](/file=papers/S18-Nano%20graphite%20platelets-enabled%20piezoresistive%20cementitious%20composites%20for%20structural%20health%20monitoring.pdf); [S55](/file=papers/S55-Electro-mechanical%20self-sensing%20response%20of%20ultra-high-performance%20fiber-reinforced%20concrete%20in%20tension.pdf); [S9](/file=papers/S9-Electro-mechanical-self-sensing-response-of-ultra-high-_2018_Composites-Part.pdf); [S68](/file=papers/S68-EF~1.PDF)", "used_sentences": [{"sent": "The highest gauge factor of the cementitious composites filled with 5 vol% of NGPs is 156, which is far more than 2–3 of metal foil strain gauge.", "doc": "S18", "page": "?"}, {"sent": "The highest gauge factor of 451.26 is obtained from cement based smart nanocomposites with 0.5 wt% of COOH-MWCNTs fabricated with The gauge factor of smart cement composites reported in literature is presented in Table 5.", "doc": "S82", "page": "?"}, {"sent": "results indicated that the electrical resistance of the brass-coated steel fiber reinforced cement mortar gradually increases with the increase of the splitting load, and obtained that the highest gauge factor of cement-based composite is 5195, which is nearly 2600 times higher than that of metal strain gages with the gage factor of 2.", "doc": "S34", "page": "?"}, {"sent": "repeatability on piezoresistive response, highest gauge factor, highest stress sensitivity and good compressive strength were observed in composites containing carbon blacks with the lowest structure (125 cm3/100 g) and the highest resistivity (3.3–3.9 Ω (3) The increase in CBN aggregates structure, surface area and con­ ductivity improved the conductive network inside the composite and reduced its internal capacitance.", "doc": "S68", "page": "?"}]}, "latency_ms_total": 1040, "latency_ms_llm": null, "openai": null} +{"run_id": "5ada8d82-1291-4814-891b-8e51bdc95738", "ts": 1771369393305, "inputs": {"question": "What conductive filler type typically yields the highest gauge factor in cement-based\ncomposites?", "top_k": 8, "n_sentences": 4, "w_tfidf": 0.3, "w_bm25": 0.3, "w_emb": 0.4, "use_llm": false, "model": "gpt-5", "temperature": 0.2}, "retrieval": {"hits": [{"doc": "S82-SY~1.PDF", "page": "?", "score_tfidf": 0.9240008154272813, "score_bm25": 0.9058841901194752, "score_dense": 0.8167872813418199, "combo_score": 0.8756804142007549}, {"doc": "S18-Nano graphite platelets-enabled piezoresistive cementitious composites for structural health monitoring.pdf", "page": "?", "score_tfidf": 0.8395026805096776, "score_bm25": 0.814694884457461, "score_dense": 0.9445213507651488, "combo_score": 0.8740678097962011}, {"doc": "S55-Electro-mechanical self-sensing response of ultra-high-performance fiber-reinforced concrete in tension.pdf", "page": "?", "score_tfidf": 1.0, "score_bm25": 1.0, "score_dense": 0.6644415097846281, "combo_score": 0.8657766039138513}, {"doc": "S9-Electro-mechanical-self-sensing-response-of-ultra-high-_2018_Composites-Part.pdf", "page": "?", "score_tfidf": 1.0, "score_bm25": 1.0, "score_dense": 0.6644415097846281, "combo_score": 0.8657766039138513}, {"doc": "S82-SY~1.PDF", "page": "?", "score_tfidf": 0.7695538381891827, "score_bm25": 0.9075974860667206, "score_dense": 0.8938054098991277, "combo_score": 0.8606675612364221}, {"doc": "S68-EF~1.PDF", "page": "?", "score_tfidf": 0.7905695293702641, "score_bm25": 0.9550429518584995, "score_dense": 0.7471749173138648, "combo_score": 0.822553711294175}, {"doc": "Revolutionizing infrastructure The evolving landscape of electricity-based multifunctional concrete from concept to practice.pdf", "page": "?", "score_tfidf": 0.6715129139774919, "score_bm25": 0.8176725081731818, "score_dense": 0.8958990980313201, "combo_score": 0.8051152658577301}, {"doc": "S34-Self-sensing-ultra-high-performance-concrete-fo_2021_Sensors-and-Actuators-A.pdf", "page": "?", "score_tfidf": 0.7597570291002825, "score_bm25": 0.826967011443848, "score_dense": 0.7791221580219055, "combo_score": 0.7876660753720014}], "latency_ms_retriever": 295}, "output": {"final_answer": "**Answer:** The highest gauge factor of the cementitious composites filled with 5 vol% of NGPs is 156, which is far more than 2–3 of metal foil strain gauge. (S18) The highest gauge factor of 451.26 is obtained from cement based smart nanocomposites with 0.5 wt% of COOH-MWCNTs fabricated with The gauge factor of smart cement composites reported in literature is presented in Table 5. (S82) results indicated that the electrical resistance of the brass-coated steel fiber reinforced cement mortar gradually increases with the increase of the splitting load, and obtained that the highest gauge factor of cement-based composite is 5195, which is nearly 2600 times higher than that of metal strain gages with the gage factor of 2. (S34) repeatability on piezoresistive response, highest gauge factor, highest stress sensitivity and good compressive strength were observed in composites containing carbon blacks with the lowest structure (125 cm3/100 g) and the highest resistivity (3.3–3.9 Ω (3) The increase in CBN aggregates structure, surface area and con­ ductivity improved the conductive network inside the composite and reduced its internal capacitance. (S68)\n\n**Citations:** S82; S18; S55; S9; S68", "used_sentences": [{"sent": "The highest gauge factor of the cementitious composites filled with 5 vol% of NGPs is 156, which is far more than 2–3 of metal foil strain gauge.", "doc": "S18", "page": "?"}, {"sent": "The highest gauge factor of 451.26 is obtained from cement based smart nanocomposites with 0.5 wt% of COOH-MWCNTs fabricated with The gauge factor of smart cement composites reported in literature is presented in Table 5.", "doc": "S82", "page": "?"}, {"sent": "results indicated that the electrical resistance of the brass-coated steel fiber reinforced cement mortar gradually increases with the increase of the splitting load, and obtained that the highest gauge factor of cement-based composite is 5195, which is nearly 2600 times higher than that of metal strain gages with the gage factor of 2.", "doc": "S34", "page": "?"}, {"sent": "repeatability on piezoresistive response, highest gauge factor, highest stress sensitivity and good compressive strength were observed in composites containing carbon blacks with the lowest structure (125 cm3/100 g) and the highest resistivity (3.3–3.9 Ω (3) The increase in CBN aggregates structure, surface area and con­ ductivity improved the conductive network inside the composite and reduced its internal capacitance.", "doc": "S68", "page": "?"}]}, "latency_ms_total": 1048, "latency_ms_llm": null, "openai": null} +{"run_id": "3bef3e6b-b4cb-4531-b287-3685d9b0bd74", "ts": 1771370791775, "inputs": {"question": "How does CNT length influence stress gauge factor performance?", "top_k": 8, "n_sentences": 4, "w_tfidf": 0.3, "w_bm25": 0.3, "w_emb": 0.4, "use_llm": false, "model": "gpt-5", "temperature": 0.2}, "retrieval": {"hits": [{"doc": "S45-Insitu synthesizing carbon nanotubes on cement to develop self-sensing cementitious composites.pdf", "page": "?", "score_tfidf": 0.6676194053845611, "score_bm25": 0.9539704442079809, "score_dense": 0.9001611250512749, "combo_score": 0.8465414048982725}, {"doc": "S45-Insitu synthesizing carbon nanotubes on cement to develop self-sensing cementitious composites.pdf", "page": "?", "score_tfidf": 0.6246525781011704, "score_bm25": 0.937502666778104, "score_dense": 0.9025056585907169, "combo_score": 0.8296488369000691}, {"doc": "S82-SY~1.PDF", "page": "?", "score_tfidf": 0.741241413314952, "score_bm25": 1.0, "score_dense": 0.6662800559668925, "combo_score": 0.7888844463812426}, {"doc": "S45-Insitu synthesizing carbon nanotubes on cement to develop self-sensing cementitious composites.pdf", "page": "?", "score_tfidf": 0.5308932095950486, "score_bm25": 0.8582121001475044, "score_dense": 0.9269541782395806, "combo_score": 0.7875132642185981}, {"doc": "S78-Mechanical and self-sensing properties of concrete reinforced with carbon nanofibres.pdf", "page": "?", "score_tfidf": 0.5208098986734895, "score_bm25": 0.9410350103051379, "score_dense": 0.8201862554113928, "combo_score": 0.7666279748581454}, {"doc": "S85-Performance of cement-based sensors with CNT for strain sensing.pdf", "page": "?", "score_tfidf": 0.5896459104834435, "score_bm25": 0.8911648142453857, "score_dense": 0.8056640829983435, "combo_score": 0.7665088506179862}, {"doc": "S56-Self-sensing cementitious composites incorporated with botryoid hybrid nano-carbon materials for smart infrastructures.pdf", "page": "?", "score_tfidf": 0.6068468728468565, "score_bm25": 0.8431882902106639, "score_dense": 0.8075942121140879, "combo_score": 0.7580482337628912}, {"doc": "S85-Performance of cement-based sensors with CNT for strain sensing.pdf", "page": "?", "score_tfidf": 0.40988956584361097, "score_bm25": 0.7456437722269638, "score_dense": 1.0, "combo_score": 0.7466600014211724}], "latency_ms_retriever": 255}, "output": {"final_answer": "**Answer:** (c) Gauge factor and stress sensitivity of SSCCs with different CNT@Cem contents. (S45) Gauge factor of 0·50% CNT paste at 28 d against loading rate (negative values correspond to unloading cycles) for three different maximum axial loads (the stress levels applied were 1·875, 3·75 and 5·625 MPa, for 3, 6 and 9 kN, respectively) with CNT for strain sensing Downloaded by [ UNIVERSITY OF CAMBRIDGE] on [01/02/23]. (S85) 7c, the gauge factor of the control was determined as 21.5 and increased to 748 for the CNT@Cem-25 sample. (S45) (c) Gauge factor and stress sensitivity of SSCCs with different CNT@Cem contents. (S45)\n\n**Citations:** S45; S82; S78; S85", "used_sentences": [{"sent": "(c) Gauge factor and stress sensitivity of SSCCs with different CNT@Cem contents.", "doc": "S45", "page": "?"}, {"sent": "Gauge factor of 0·50% CNT paste at 28 d against loading rate (negative values correspond to unloading cycles) for three different maximum axial loads (the stress levels applied were 1·875, 3·75 and 5·625 MPa, for 3, 6 and 9 kN, respectively) with CNT for strain sensing Downloaded by [ UNIVERSITY OF CAMBRIDGE] on [01/02/23].", "doc": "S85", "page": "?"}, {"sent": "7c, the gauge factor of the control was determined as 21.5 and increased to 748 for the CNT@Cem-25 sample.", "doc": "S45", "page": "?"}, {"sent": "(c) Gauge factor and stress sensitivity of SSCCs with different CNT@Cem contents.", "doc": "S45", "page": "?"}]}, "latency_ms_total": 1149, "latency_ms_llm": null, "openai": null} diff --git a/rag_artifacts/tfidf_matrix.joblib b/rag_artifacts/tfidf_matrix.joblib new file mode 100644 index 0000000000000000000000000000000000000000..0cdcee7aa8c3afbbb693312ca394596b97d58798 --- /dev/null +++ b/rag_artifacts/tfidf_matrix.joblib @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:67ae7fdedbd93f5f69f3ef8ef14c8113fada46ebcd4b11a3c8b6ac06a59278b7 +size 22115315 diff --git a/rag_artifacts/tfidf_vectorizer.joblib b/rag_artifacts/tfidf_vectorizer.joblib new file mode 100644 index 0000000000000000000000000000000000000000..638d4bb74cb03b8c7de9bc69acd6b02bf216af97 --- /dev/null +++ b/rag_artifacts/tfidf_vectorizer.joblib @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:6df0b9f3418f8abc32feaef1e85bd4f6c0cc5ec395ae2464c635a046ca114f57 +size 7520233 diff --git a/rag_eval_metrics.py b/rag_eval_metrics.py new file mode 100644 index 0000000000000000000000000000000000000000..49115eb68de130220ca3f2dff4cafee89c1eb3b9 --- /dev/null +++ b/rag_eval_metrics.py @@ -0,0 +1,727 @@ +#!/usr/bin/env python3 +""" +rag_eval_metrics.py + +Evaluate RAG retrieval quality by comparing app logs (JSONL) with a gold file (CSV). + +Extended to also evaluate answer quality using: +- Lexical similarity: BLEU, ROUGE-1/2/L +- Semantic similarity: BERTScore (Recall, F1) + +If nltk / rouge-score / bert-score are missing, the script still runs and +returns NaN for these metrics instead of crashing. + +Also uses robust CSV reading to handle non-UTF8 encodings (cp1252/latin1). +""" + +import argparse +import json +import os +import sys +from pathlib import Path +from typing import Dict, List, Tuple, Any, Optional + +import pandas as pd +import numpy as np + +# ----------------------------- Small Utils ----------------------------- # + +def filename_key(s: str) -> str: + s = (s or "").strip().replace("\\", "/").split("/")[-1] + return s.casefold() + +def re_split_sc(s: str) -> List[str]: + import re + return re.split(r"[;,]", s) + +def _pick_last_non_empty(hit_lists) -> List[dict]: + """ + Robustly select the last non-empty hits list from a pandas Series or iterable. + + This fixes the KeyError that happens when using reversed() directly on a Series + with a non-range index. + """ + # Convert pandas Series or other iterables to a plain Python list + try: + values = list(hit_lists.tolist()) + except AttributeError: + values = list(hit_lists) + + # Walk from last to first, return first non-empty list-like + for lst in reversed(values): + if isinstance(lst, (list, tuple)) and len(lst) > 0: + return lst + + # If everything was empty / NaN + return [] + +def _read_csv_robust(path: Path) -> pd.DataFrame: + """ + Try multiple encodings so we don't crash on Windows-1252 / Latin-1 CSVs. + """ + encodings = ["utf-8", "utf-8-sig", "cp1252", "latin1"] + last_err = None + for enc in encodings: + try: + return pd.read_csv(path, encoding=enc) + except UnicodeDecodeError as e: + last_err = e + continue + # If all fail, re-raise the last error + raise last_err if last_err is not None else ValueError( + "Failed to read CSV with fallback encodings." + ) + +# ----------------------------- IO Helpers ----------------------------- # + +def read_logs(jsonl_path: Path) -> pd.DataFrame: + """ + Read RAG JSONL logs and aggregate by question. + + Returns a DataFrame with columns: + - question: original question text (last occurrence) + - hits: list of dicts {doc, page} for retrieval + - answer: final answer text logged for that question + """ + rows = [] + if (not jsonl_path.exists()) or jsonl_path.stat().st_size == 0: + return pd.DataFrame(columns=["question", "hits", "answer"]) + + with open(jsonl_path, "r", encoding="utf-8") as f: + for line in f: + line = line.strip() + if not line: + continue + try: + rec = json.loads(line) + except Exception: + continue + + # Extract question + q = (((rec.get("inputs") or {}).get("question")) or "").strip() + + # Extract retrieval hits (if present) + retr = (rec.get("retrieval") or {}) + hits = retr.get("hits", []) + norm_hits = [] + for h in hits or []: + doc = (h.get("doc") or "").strip() + page = str(h.get("page") or "").strip() + + # Normalize page to int or None + try: + page_int = int(page) + except Exception: + page_int = None + + norm_hits.append({"doc": doc, "page": page_int}) + + # Extract final answer text (if present) + out = (rec.get("output") or {}) + ans = ((out.get("final_answer") or "")).strip() + + rows.append({"question": q, "hits": norm_hits, "answer": ans}) + + df = pd.DataFrame(rows) + if df.empty: + return pd.DataFrame(columns=["question", "hits", "answer"]) + + # Group by normalized question text and keep last non-empty hits list and answer per question + df = ( + df.groupby(df["question"].astype(str).str.casefold().str.strip(), as_index=False) + .agg({ + "question": "last", + "hits": _pick_last_non_empty, + "answer": "last" + }) + ) + return df + +def read_gold(csv_path: Path) -> Tuple[pd.DataFrame, Dict[str, str]]: + """ + Read gold CSV with retrieval labels and optional reference answers. + + Returns: + - gold_df: rows with columns ['question', 'doc', 'page', 'answer', ...] + where 'question' is normalized (casefold+strip) + - gold_answers: dict mapping normalized question -> reference answer text + """ + df = _read_csv_robust(csv_path) + cols = {c.lower().strip(): c for c in df.columns} + + # --- question column --- + q_col = None + for cand in ["question", "query", "q"]: + if cand in cols: + q_col = cols[cand] + break + if q_col is None: + raise ValueError("Gold CSV must contain a 'question' column (case-insensitive).") + + # --- possible relevant_docs (list-in-cell) column --- + rel_list_col = None + for cand in ["relevant_docs", "relevant", "docs"]: + if cand in cols: + rel_list_col = cols[cand] + break + + # --- single-doc-per-row column --- + doc_col = None + for cand in ["doc", "document", "file", "doc_name"]: + if cand in cols: + doc_col = cols[cand] + break + + # --- optional page column --- + page_col = None + for cand in ["page", "page_num", "page_number"]: + if cand in cols: + page_col = cols[cand] + break + + # --- optional answer column (for QA metrics) --- + ans_col = None + for cand in ["answer", "reference_answer", "gold_answer"]: + if cand in cols: + ans_col = cols[cand] + break + + rows = [] + + # Case 1: relevant_docs list column (no explicit doc_col) + if rel_list_col and doc_col is None: + for _, r in df.iterrows(): + q_raw = str(r[q_col]).strip() + q_norm = q_raw.casefold().strip() + ans_raw = str(r[ans_col]).strip() if (ans_col and pd.notna(r[ans_col])) else "" + + rel_val = str(r[rel_list_col]) if pd.notna(r[rel_list_col]) else "" + if not rel_val: + rows.append({ + "question_raw": q_raw, + "question": q_norm, + "doc": None, + "page": np.nan, + "answer": ans_raw + }) + continue + + parts = [p.strip() for p in re_split_sc(rel_val)] + for d in parts: + rows.append({ + "question_raw": q_raw, + "question": q_norm, + "doc": filename_key(d), + "page": np.nan, + "answer": ans_raw + }) + + # Case 2: doc/page columns (one relevant doc per row) + elif doc_col: + for _, r in df.iterrows(): + q_raw = str(r[q_col]).strip() + q_norm = q_raw.casefold().strip() + ans_raw = str(r[ans_col]).strip() if (ans_col and pd.notna(r[ans_col])) else "" + + d = str(r[doc_col]).strip() if pd.notna(r[doc_col]) else "" + p = r[page_col] if (page_col and pd.notna(r[page_col])) else np.nan + + try: + p = int(p) + except Exception: + p = np.nan + + rows.append({ + "question_raw": q_raw, + "question": q_norm, + "doc": filename_key(d), + "page": p, + "answer": ans_raw + }) + + else: + raise ValueError("Gold CSV must contain either a 'doc' column or a 'relevant_docs' column.") + + gold = pd.DataFrame(rows) + + # Keep only rows with a valid doc (when docs exist) + gold["has_doc"] = gold["doc"].apply(lambda x: isinstance(x, str) and len(x) > 0) + if gold["has_doc"].any(): + gold = gold[gold["has_doc"]].copy() + gold.drop(columns=["has_doc"], inplace=True, errors="ignore") + + # Remove duplicates + gold = gold.drop_duplicates(subset=["question", "doc", "page"]) + + # Build question -> gold_answer map (normalized questions) + gold_answers: Dict[str, str] = {} + if "answer" in gold.columns: + tmp = ( + gold[["question", "answer"]] + .dropna(subset=["answer"]) + .drop_duplicates(subset=["question"]) + ) + gold_answers = dict(zip(tmp["question"], tmp["answer"])) + + return gold, gold_answers + +# ----------------------------- Retrieval Metric Core ----------------------------- # + +def dcg_at_k(relevances: List[int]) -> float: + dcg = 0.0 + for i, rel in enumerate(relevances, start=1): + if rel > 0: + dcg += 1.0 / np.log2(i + 1.0) + return float(dcg) + +def ndcg_at_k(relevances: List[int]) -> float: + dcg = dcg_at_k(relevances) + ideal = sorted(relevances, reverse=True) + idcg = dcg_at_k(ideal) + if idcg == 0.0: + return 0.0 + return float(dcg / idcg) + +def compute_metrics_for_question(gold_docs, gold_pages, hits, k): + top = hits[:k] if hits else [] + pred_docs = [filename_key(h.get("doc", "")) for h in top] + pred_pairs = [(filename_key(h.get("doc", "")), h.get("page", None)) for h in top] + + # --- Doc-level metrics --- + gold_doc_set = set([d for d in gold_docs if isinstance(d, str) and d]) + + rel_bin_doc = [1 if d in gold_doc_set else 0 for d in pred_docs] + hitk_doc = 1 if any(rel_bin_doc) else 0 + prec_doc = (sum(rel_bin_doc) / max(1, len(pred_docs))) if pred_docs else 0.0 + rec_doc = (sum(rel_bin_doc) / max(1, len(gold_doc_set))) if gold_doc_set else 0.0 + ndcg_doc = ndcg_at_k(rel_bin_doc) + + # --- Page-level metrics (only if gold has page labels) --- + gold_pairs = set() + for d, p in zip(gold_docs, gold_pages): + if isinstance(d, str) and d and (p is not None) and (not (isinstance(p, float) and np.isnan(p))): + try: + p_int = int(p) + except Exception: + continue + gold_pairs.add((d, p_int)) + + if gold_pairs: + rel_bin_page = [] + for (d, p) in pred_pairs: + if p is None or not isinstance(p, int): + rel_bin_page.append(0) + else: + rel_bin_page.append(1 if (d, p) in gold_pairs else 0) + + hitk_page = 1 if any(rel_bin_page) else 0 + prec_page = (sum(rel_bin_page) / max(1, len(pred_pairs))) if pred_pairs else 0.0 + rec_page = (sum(rel_bin_page) / max(1, len(gold_pairs))) if gold_pairs else 0.0 + ndcg_page = ndcg_at_k(rel_bin_page) + else: + hitk_page = prec_page = rec_page = ndcg_page = np.nan + + return { + "hit@k_doc": hitk_doc, + "precision@k_doc": prec_doc, + "recall@k_doc": rec_doc, + "ndcg@k_doc": ndcg_doc, + "hit@k_page": hitk_page, + "precision@k_page": prec_page, + "recall@k_page": rec_page, + "ndcg@k_page": ndcg_page, + "n_gold_docs": int(len(gold_doc_set)), + "n_gold_doc_pages": int(len(gold_pairs)), + "n_pred": int(len(pred_docs)) + } + +# ---------------------- Answer Quality Metrics (with fallbacks) ---------------------- # + +# Try to import optional libraries; if missing, we fall back to NaN metrics +try: + from nltk.translate.bleu_score import sentence_bleu, SmoothingFunction + HAVE_NLTK = True +except Exception: + sentence_bleu = None + SmoothingFunction = None + HAVE_NLTK = False + +try: + from rouge_score import rouge_scorer + HAVE_ROUGE = True +except Exception: + rouge_scorer = None + HAVE_ROUGE = False + +try: + from bert_score import score as bert_score + HAVE_BERT = True +except Exception: + bert_score = None + HAVE_BERT = False + +if HAVE_NLTK: + _SMOOTH = SmoothingFunction().method1 +else: + _SMOOTH = None + +if HAVE_ROUGE: + _ROUGE_SCORER = rouge_scorer.RougeScorer( + ["rouge1", "rouge2", "rougeL"], use_stemmer=True + ) +else: + _ROUGE_SCORER = None + +def _normalize_text_for_metrics(s: str) -> str: + import re + s = (s or "").strip().lower() + # remove simple markdown markers + s = re.sub(r"\*\*|\*", "", s) + # drop inline citations like (Doc.pdf, p.X) + s = re.sub(r"\([^)]*\)", " ", s) + s = re.sub(r"\s+", " ", s) + return s.strip() + +def compute_text_metrics(pred: str, ref: str) -> Dict[str, float]: + """ + Compute lexical and semantic similarity metrics between prediction and reference: + - BLEU + - ROUGE-1/2/L (F-measure) + - BERTScore Recall, F1 + + If the required libraries (nltk, rouge-score, bert-score) are not installed, + returns NaN for all metrics. + """ + # If any of the libraries is missing, skip answer metrics + if not (HAVE_NLTK and HAVE_ROUGE and HAVE_BERT): + return { + "bleu": np.nan, + "rouge1": np.nan, + "rouge2": np.nan, + "rougeL": np.nan, + "bert_recall": np.nan, + "bert_f1": np.nan, + } + + pred_n = _normalize_text_for_metrics(pred) + ref_n = _normalize_text_for_metrics(ref) + + if not pred_n or not ref_n: + return { + "bleu": np.nan, + "rouge1": np.nan, + "rouge2": np.nan, + "rougeL": np.nan, + "bert_recall": np.nan, + "bert_f1": np.nan, + } + + pred_tokens = pred_n.split() + ref_tokens = ref_n.split() + + # BLEU (sentence-level with smoothing) + bleu = float( + sentence_bleu([ref_tokens], pred_tokens, smoothing_function=_SMOOTH) + ) + + # ROUGE via rouge-score (F-measure) + rs = _ROUGE_SCORER.score(ref_n, pred_n) + rouge1 = float(rs["rouge1"].fmeasure) + rouge2 = float(rs["rouge2"].fmeasure) + rougeL = float(rs["rougeL"].fmeasure) + + # BERTScore (semantic similarity) + P, R, F1 = bert_score([pred_n], [ref_n], lang="en", rescale_with_baseline=True) + bert_recall = float(R.mean().item()) + bert_f1 = float(F1.mean().item()) + + return { + "bleu": bleu, + "rouge1": rouge1, + "rouge2": rouge2, + "rougeL": rougeL, + "bert_recall": bert_recall, + "bert_f1": bert_f1, + } + +# ----------------------------- Orchestration ----------------------------- # + +# === Dark blue and accent colors === +COLOR_TITLE = "\033[94m" # light blue for titles +COLOR_TEXT = "\033[34m" # dark blue +COLOR_ACCENT = "\033[36m" # cyan for metrics +COLOR_RESET = "\033[0m" + +def _fmt(x: Any) -> str: + try: + return f"{float(x):.3f}" + except Exception: + return "-" + +def main(): + ap = argparse.ArgumentParser() + ap.add_argument("--gold_csv", required=True, type=str) + ap.add_argument("--logs_jsonl", required=True, type=str) + ap.add_argument("--k", type=int, default=8) + ap.add_argument("--out_dir", type=str, default="rag_artifacts") + args = ap.parse_args() + + out_dir = Path(args.out_dir) + out_dir.mkdir(parents=True, exist_ok=True) + + gold_path = Path(args.gold_csv) + logs_path = Path(args.logs_jsonl) + + if not gold_path.exists(): + print( + f"{COLOR_TEXT}❌ gold.csv not found at {gold_path}{COLOR_RESET}", + file=sys.stderr, + ) + sys.exit(0) + if not logs_path.exists() or logs_path.stat().st_size == 0: + print( + f"{COLOR_TEXT}❌ logs JSONL not found or empty at {logs_path}{COLOR_RESET}", + file=sys.stderr, + ) + sys.exit(0) + + # Read gold (retrieval + QA answers) + try: + gold, gold_answers = read_gold(gold_path) + except Exception as e: + print( + f"{COLOR_TEXT}❌ Failed to read gold: {e}{COLOR_RESET}", + file=sys.stderr, + ) + sys.exit(0) + + # Read logs (with robust aggregation) + try: + logs = read_logs(logs_path) + except Exception as e: + print( + f"{COLOR_TEXT}❌ Failed to read logs: {e}{COLOR_RESET}", + file=sys.stderr, + ) + sys.exit(0) + + if gold.empty: + print( + f"{COLOR_TEXT}❌ Gold file contains no usable rows.{COLOR_RESET}", + file=sys.stderr, + ) + sys.exit(0) + if logs.empty: + print( + f"{COLOR_TEXT}❌ Logs file contains no usable entries.{COLOR_RESET}", + file=sys.stderr, + ) + sys.exit(0) + + # Build gold dict: normalized_question -> list of (doc, page) + gdict: Dict[str, List[Tuple[str, Optional[int]]]] = {} + for _, r in gold.iterrows(): + q = str(r["question"]).strip() # already normalized in read_gold + d = r["doc"] + p = r["page"] if "page" in r else np.nan + gdict.setdefault(q, []).append((d, p)) + + # Normalize log questions for join + logs["q_norm"] = logs["question"].astype(str).str.casefold().str.strip() + + perq_rows = [] + not_in_logs, not_in_gold = [], [] + + # For each gold question, compute metrics using logs + for q_norm, pairs in gdict.items(): + row = logs[logs["q_norm"] == q_norm] + gdocs = [d for (d, _) in pairs] + gpages = [p for (_, p) in pairs] + + if row.empty: + # No logs for this gold question → zero retrieval and no answer metrics + not_in_logs.append(q_norm) + base_metrics = { + "hit@k_doc": 0, + "precision@k_doc": 0.0, + "recall@k_doc": 0.0, + "ndcg@k_doc": 0.0, + "hit@k_page": np.nan, + "precision@k_page": np.nan, + "recall@k_page": np.nan, + "ndcg@k_page": np.nan, + "n_gold_docs": int(len(set([d for d in gdocs if isinstance(d, str) and d]))), + "n_gold_doc_pages": int( + len( + [ + (d, p) + for (d, p) in zip(gdocs, gpages) + if isinstance(d, str) and d and pd.notna(p) + ] + ) + ), + "n_pred": 0, + } + + txt_metrics = { + "bleu": np.nan, + "rouge1": np.nan, + "rouge2": np.nan, + "rougeL": np.nan, + "bert_recall": np.nan, + "bert_f1": np.nan, + } + + perq_rows.append( + { + "question": q_norm, + "covered_in_logs": 0, + **base_metrics, + **txt_metrics, + } + ) + continue + + # Use aggregated hits from read_logs + hits = row.iloc[0]["hits"] or [] + base_metrics = compute_metrics_for_question(gdocs, gpages, hits, args.k) + + # Answer text: predicted vs. gold + pred_answer = str(row.iloc[0].get("answer", "")).strip() + gold_answer = str(gold_answers.get(q_norm, "")).strip() + + if gold_answer and pred_answer: + txt_metrics = compute_text_metrics(pred_answer, gold_answer) + else: + txt_metrics = { + "bleu": np.nan, + "rouge1": np.nan, + "rouge2": np.nan, + "rougeL": np.nan, + "bert_recall": np.nan, + "bert_f1": np.nan, + } + + perq_rows.append( + { + "question": q_norm, + "covered_in_logs": 1, + **base_metrics, + **txt_metrics, + } + ) + + # Any log questions not in gold + gold_qs = set(gdict.keys()) + for qn in logs["q_norm"].tolist(): + if qn not in gold_qs: + not_in_gold.append(qn) + + perq = pd.DataFrame(perq_rows) + covered = perq[perq["covered_in_logs"] == 1].copy() + + agg = { + "questions_total_gold": int(len(gdict)), + "questions_covered_in_logs": int(covered.shape[0]), + "questions_missing_in_logs": int(len(not_in_logs)), + "questions_in_logs_not_in_gold": int(len(set(not_in_gold))), + "k": int(args.k), + "mean_hit@k_doc": float(covered["hit@k_doc"].mean()) if not covered.empty else 0.0, + "mean_precision@k_doc": float(covered["precision@k_doc"].mean()) if not covered.empty else 0.0, + "mean_recall@k_doc": float(covered["recall@k_doc"].mean()) if not covered.empty else 0.0, + "mean_ndcg@k_doc": float(covered["ndcg@k_doc"].mean()) if not covered.empty else 0.0, + "mean_hit@k_page": float(covered["hit@k_page"].dropna().mean()) + if covered["hit@k_page"].notna().any() + else None, + "mean_precision@k_page": float(covered["precision@k_page"].dropna().mean()) + if covered["precision@k_page"].notna().any() + else None, + "mean_recall@k_page": float(covered["recall@k_page"].dropna().mean()) + if covered["recall@k_page"].notna().any() + else None, + "mean_ndcg@k_page": float(covered["ndcg@k_page"].dropna().mean()) + if covered["ndcg@k_page"].notna().any() + else None, + "avg_gold_docs_per_q": float(perq["n_gold_docs"].mean()) if not perq.empty else 0.0, + "avg_preds_per_q": float(perq["n_pred"].mean()) if not perq.empty else 0.0, + "examples_missing_in_logs": list(not_in_logs[:10]), + "examples_in_logs_not_in_gold": list(dict.fromkeys(not_in_gold))[:10], + } + + # Aggregate answer-quality metrics (lexical + semantic) + if "bleu" in covered.columns: + agg["mean_bleu"] = float(covered["bleu"].mean(skipna=True)) + agg["mean_rouge1"] = float(covered["rouge1"].mean(skipna=True)) + agg["mean_rouge2"] = float(covered["rouge2"].mean(skipna=True)) + agg["mean_rougeL"] = float(covered["rougeL"].mean(skipna=True)) + agg["mean_bert_recall"] = float(covered["bert_recall"].mean(skipna=True)) + agg["mean_bert_f1"] = float(covered["bert_f1"].mean(skipna=True)) + + perq_path = out_dir / "metrics_per_question.csv" + agg_path = out_dir / "metrics_aggregate.json" + + perq.to_csv(perq_path, index=False) + with open(agg_path, "w", encoding="utf-8") as f: + json.dump(agg, f, ensure_ascii=False, indent=2) + + # === Console summary with color === + print(f"{COLOR_TITLE}RAG Evaluation Summary{COLOR_RESET}") + print(f"{COLOR_TITLE}----------------------{COLOR_RESET}") + print(f"{COLOR_TEXT}Gold questions: {COLOR_ACCENT}{agg['questions_total_gold']}{COLOR_RESET}") + print(f"{COLOR_TEXT}Covered in logs: {COLOR_ACCENT}{agg['questions_covered_in_logs']}{COLOR_RESET}") + print(f"{COLOR_TEXT}Missing in logs: {COLOR_ACCENT}{agg['questions_missing_in_logs']}{COLOR_RESET}") + print( + f"{COLOR_TEXT}In logs but not in gold: " + f"{COLOR_ACCENT}{agg['questions_in_logs_not_in_gold']}{COLOR_RESET}" + ) + print(f"{COLOR_TEXT}k = {COLOR_ACCENT}{agg['k']}{COLOR_RESET}\n") + + print( + f"{COLOR_TEXT}Doc-level:{COLOR_RESET} " + f"{COLOR_ACCENT}Hit@k={_fmt(agg['mean_hit@k_doc'])} " + f"Precision@k={_fmt(agg['mean_precision@k_doc'])} " + f"Recall@k={_fmt(agg['mean_recall@k_doc'])} " + f"nDCG@k={_fmt(agg['mean_ndcg@k_doc'])}{COLOR_RESET}" + ) + + if agg.get("mean_hit@k_page") is not None: + print( + f"{COLOR_TEXT}Page-level:{COLOR_RESET} " + f"{COLOR_ACCENT}Hit@k={_fmt(agg['mean_hit@k_page'])} " + f"Precision@k={_fmt(agg['mean_precision@k_page'])} " + f"Recall={_fmt(agg['mean_recall@k_page'])} " + f"nDCG@k={_fmt(agg['mean_ndcg@k_page'])}{COLOR_RESET}" + ) + else: + print(f"{COLOR_TEXT}Page-level: (no page labels in gold){COLOR_RESET}") + + # Lexical metrics summary + if "mean_bleu" in agg: + print( + f"{COLOR_TEXT}Lexical (answer quality):{COLOR_RESET} " + f"{COLOR_ACCENT}BLEU={_fmt(agg.get('mean_bleu'))} " + f"ROUGE-1={_fmt(agg.get('mean_rouge1'))} " + f"ROUGE-2={_fmt(agg.get('mean_rouge2'))} " + f"ROUGE-L={_fmt(agg.get('mean_rougeL'))}{COLOR_RESET}" + ) + + # Semantic metrics summary + if "mean_bert_f1" in agg: + print( + f"{COLOR_TEXT}Semantic (BERTScore):{COLOR_RESET} " + f"{COLOR_ACCENT}Recall={_fmt(agg.get('mean_bert_recall'))} " + f"F1={_fmt(agg.get('mean_bert_f1'))}{COLOR_RESET}" + ) + + print() + print( + f"{COLOR_TEXT}Wrote per-question CSV → " + f"{COLOR_ACCENT}{perq_path}{COLOR_RESET}" + ) + print( + f"{COLOR_TEXT}Wrote aggregate JSON → " + f"{COLOR_ACCENT}{agg_path}{COLOR_RESET}" + ) + +if __name__ == "__main__": + main() diff --git a/requirements.txt b/requirements.txt new file mode 100644 index 0000000000000000000000000000000000000000..3fd8cc2b1c2388dd6c2d8415bfc67592b4ef07fe --- /dev/null +++ b/requirements.txt @@ -0,0 +1,20 @@ +# Core +gradio +numpy +pandas +scikit-learn +joblib + +# RAG / retrieval +sentence-transformers +rank-bm25 +PyMuPDF +pypdf + +# OpenAI LLM (for optional LLM synthesis) +openai + +# Evaluation metrics (lexical + semantic) +nltk +rouge-score +bert-score