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Create rag_core.py
Browse files- rag_core.py +699 -0
rag_core.py
ADDED
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| 1 |
+
# rag_core.py — RAG core + logging + grid evaluation (no UI)
|
| 2 |
+
|
| 3 |
+
import os
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| 4 |
+
import re
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| 5 |
+
import json
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+
import time
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| 7 |
+
import uuid
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| 8 |
+
import traceback
|
| 9 |
+
from pathlib import Path
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+
from typing import List, Dict, Any, Optional, Tuple
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| 11 |
+
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import numpy as np
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import pandas as pd
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+
# ---------------------- Optional deps ---------------------- #
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| 16 |
+
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USE_DENSE = True
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+
try:
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| 19 |
+
from sentence_transformers import SentenceTransformer
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+
except Exception:
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USE_DENSE = False
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+
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+
try:
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| 24 |
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from rank_bm25 import BM25Okapi
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except Exception:
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BM25Okapi = None
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print("rank_bm25 not installed; BM25 disabled (TF-IDF still works).")
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+
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+
# Optional OpenAI (for LLM synthesis; not needed for retrieval eval)
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+
OPENAI_API_KEY = os.getenv("OPENAI_API_KEY")
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| 31 |
+
OPENAI_MODEL = os.getenv("OPENAI_MODEL", "gpt-5")
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| 32 |
+
try:
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+
from openai import OpenAI
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| 34 |
+
except Exception:
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| 35 |
+
OpenAI = None
|
| 36 |
+
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| 37 |
+
LLM_AVAILABLE = (
|
| 38 |
+
OPENAI_API_KEY is not None
|
| 39 |
+
and OPENAI_API_KEY.strip() != ""
|
| 40 |
+
and OpenAI is not None
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| 41 |
+
)
|
| 42 |
+
|
| 43 |
+
# -------------------------- Paths & artifacts --------------------------- #
|
| 44 |
+
|
| 45 |
+
ARTIFACT_DIR = Path("rag_artifacts")
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| 46 |
+
ARTIFACT_DIR.mkdir(exist_ok=True)
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| 47 |
+
LOCAL_PDF_DIR = Path("papers")
|
| 48 |
+
LOCAL_PDF_DIR.mkdir(exist_ok=True)
|
| 49 |
+
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| 50 |
+
TFIDF_VECT_PATH = ARTIFACT_DIR / "tfidf_vectorizer.joblib"
|
| 51 |
+
TFIDF_MAT_PATH = ARTIFACT_DIR / "tfidf_matrix.joblib"
|
| 52 |
+
BM25_TOK_PATH = ARTIFACT_DIR / "bm25_tokens.joblib"
|
| 53 |
+
EMB_NPY_PATH = ARTIFACT_DIR / "chunk_embeddings.npy"
|
| 54 |
+
RAG_META_PATH = ARTIFACT_DIR / "chunks.parquet"
|
| 55 |
+
|
| 56 |
+
LOG_PATH = ARTIFACT_DIR / "rag_logs.jsonl"
|
| 57 |
+
|
| 58 |
+
USE_ONLINE_SOURCES = os.getenv("USE_ONLINE_SOURCES", "false").lower() == "true"
|
| 59 |
+
|
| 60 |
+
# default hybrid weights
|
| 61 |
+
W_TFIDF_DEFAULT = 0.50 if not USE_DENSE else 0.30
|
| 62 |
+
W_BM25_DEFAULT = 0.50 if not USE_DENSE else 0.30
|
| 63 |
+
W_EMB_DEFAULT = 0.00 if not USE_DENSE else 0.40
|
| 64 |
+
|
| 65 |
+
# -------------------------- basic text helpers -------------------------- #
|
| 66 |
+
|
| 67 |
+
_SENT_SPLIT_RE = re.compile(r"(?<=[.!?])\s+|\n+")
|
| 68 |
+
TOKEN_RE = re.compile(r"[A-Za-z0-9_#+\-/\.%]+")
|
| 69 |
+
|
| 70 |
+
def sent_split(text: str) -> List[str]:
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| 71 |
+
sents = [s.strip() for s in _SENT_SPLIT_RE.split(text) if s.strip()]
|
| 72 |
+
return [s for s in sents if len(s.split()) >= 5]
|
| 73 |
+
|
| 74 |
+
def tokenize(text: str) -> List[str]:
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| 75 |
+
return [t.lower() for t in TOKEN_RE.findall(text)]
|
| 76 |
+
|
| 77 |
+
# -------------------------- PDF text extraction ------------------------ #
|
| 78 |
+
|
| 79 |
+
def _extract_pdf_text(pdf_path: Path) -> str:
|
| 80 |
+
try:
|
| 81 |
+
import fitz # PyMuPDF
|
| 82 |
+
doc = fitz.open(pdf_path)
|
| 83 |
+
out = []
|
| 84 |
+
for i, page in enumerate(doc):
|
| 85 |
+
out.append(f"[[PAGE={i+1}]]\n{page.get_text('text') or ''}")
|
| 86 |
+
return "\n\n".join(out)
|
| 87 |
+
except Exception:
|
| 88 |
+
try:
|
| 89 |
+
from pypdf import PdfReader
|
| 90 |
+
reader = PdfReader(str(pdf_path))
|
| 91 |
+
out = []
|
| 92 |
+
for i, p in enumerate(reader.pages):
|
| 93 |
+
txt = p.extract_text() or ""
|
| 94 |
+
out.append(f"[[PAGE={i+1}]]\n{txt}")
|
| 95 |
+
return "\n\n".join(out)
|
| 96 |
+
except Exception as e:
|
| 97 |
+
print(f"PDF read error ({pdf_path}): {e}")
|
| 98 |
+
return ""
|
| 99 |
+
|
| 100 |
+
def chunk_by_sentence_windows(text: str, win_size: int = 8, overlap: int = 2) -> List[str]:
|
| 101 |
+
sents = sent_split(text)
|
| 102 |
+
chunks, step = [], max(1, win_size - overlap)
|
| 103 |
+
for i in range(0, len(sents), step):
|
| 104 |
+
window = sents[i:i+win_size]
|
| 105 |
+
if not window:
|
| 106 |
+
break
|
| 107 |
+
chunks.append(" ".join(window))
|
| 108 |
+
return chunks
|
| 109 |
+
|
| 110 |
+
# -------------------------- dense encoder -------------------------- #
|
| 111 |
+
|
| 112 |
+
def _safe_init_st_model(name: str):
|
| 113 |
+
global USE_DENSE
|
| 114 |
+
if not USE_DENSE:
|
| 115 |
+
return None
|
| 116 |
+
try:
|
| 117 |
+
return SentenceTransformer(name)
|
| 118 |
+
except Exception as e:
|
| 119 |
+
print("Dense embeddings unavailable:", e)
|
| 120 |
+
USE_DENSE = False
|
| 121 |
+
return None
|
| 122 |
+
|
| 123 |
+
# --------------------- build / load hybrid index --------------------- #
|
| 124 |
+
|
| 125 |
+
def build_or_load_hybrid(pdf_dir: Path):
|
| 126 |
+
from sklearn.feature_extraction.text import TfidfVectorizer
|
| 127 |
+
import joblib
|
| 128 |
+
|
| 129 |
+
have_cache = (
|
| 130 |
+
TFIDF_VECT_PATH.exists()
|
| 131 |
+
and TFIDF_MAT_PATH.exists()
|
| 132 |
+
and RAG_META_PATH.exists()
|
| 133 |
+
and (BM25_TOK_PATH.exists() or BM25Okapi is None)
|
| 134 |
+
and (EMB_NPY_PATH.exists() or not USE_DENSE)
|
| 135 |
+
)
|
| 136 |
+
|
| 137 |
+
if have_cache:
|
| 138 |
+
vectorizer = joblib.load(TFIDF_VECT_PATH)
|
| 139 |
+
X_tfidf = joblib.load(TFIDF_MAT_PATH)
|
| 140 |
+
meta = pd.read_parquet(RAG_META_PATH)
|
| 141 |
+
bm25_toks = joblib.load(BM25_TOK_PATH) if BM25Okapi is not None else None
|
| 142 |
+
emb = np.load(EMB_NPY_PATH) if (USE_DENSE and EMB_NPY_PATH.exists()) else None
|
| 143 |
+
return vectorizer, X_tfidf, meta, bm25_toks, emb
|
| 144 |
+
|
| 145 |
+
rows, all_tokens = [], []
|
| 146 |
+
pdf_paths = list(pdf_dir.glob("**/*.pdf"))
|
| 147 |
+
print(f"Indexing PDFs in {pdf_dir} — found {len(pdf_paths)} file(s).")
|
| 148 |
+
for pdf in pdf_paths:
|
| 149 |
+
raw = _extract_pdf_text(pdf)
|
| 150 |
+
if not raw.strip():
|
| 151 |
+
continue
|
| 152 |
+
for i, ch in enumerate(chunk_by_sentence_windows(raw, win_size=8, overlap=2)):
|
| 153 |
+
rows.append({"doc_path": str(pdf), "chunk_id": i, "text": ch})
|
| 154 |
+
all_tokens.append(tokenize(ch))
|
| 155 |
+
|
| 156 |
+
if not rows:
|
| 157 |
+
meta = pd.DataFrame(columns=["doc_path", "chunk_id", "text"])
|
| 158 |
+
return None, None, meta, None, None
|
| 159 |
+
|
| 160 |
+
meta = pd.DataFrame(rows)
|
| 161 |
+
|
| 162 |
+
vectorizer = TfidfVectorizer(
|
| 163 |
+
ngram_range=(1, 2),
|
| 164 |
+
min_df=1,
|
| 165 |
+
max_df=0.95,
|
| 166 |
+
sublinear_tf=True,
|
| 167 |
+
smooth_idf=True,
|
| 168 |
+
lowercase=True,
|
| 169 |
+
token_pattern=r"(?u)\b\w[\w\-\./%+#]*\b",
|
| 170 |
+
)
|
| 171 |
+
X_tfidf = vectorizer.fit_transform(meta["text"].tolist())
|
| 172 |
+
|
| 173 |
+
emb = None
|
| 174 |
+
if USE_DENSE:
|
| 175 |
+
try:
|
| 176 |
+
st_model = _safe_init_st_model(
|
| 177 |
+
os.getenv("EMB_MODEL_NAME", "sentence-transformers/all-MiniLM-L6-v2")
|
| 178 |
+
)
|
| 179 |
+
if st_model is not None:
|
| 180 |
+
from sklearn.preprocessing import normalize as sk_normalize
|
| 181 |
+
em = st_model.encode(
|
| 182 |
+
meta["text"].tolist(),
|
| 183 |
+
batch_size=64,
|
| 184 |
+
show_progress_bar=False,
|
| 185 |
+
convert_to_numpy=True,
|
| 186 |
+
)
|
| 187 |
+
emb = sk_normalize(em)
|
| 188 |
+
np.save(EMB_NPY_PATH, emb)
|
| 189 |
+
except Exception as e:
|
| 190 |
+
print("Dense embedding failed:", e)
|
| 191 |
+
emb = None
|
| 192 |
+
|
| 193 |
+
import joblib
|
| 194 |
+
joblib.dump(vectorizer, TFIDF_VECT_PATH)
|
| 195 |
+
joblib.dump(X_tfidf, TFIDF_MAT_PATH)
|
| 196 |
+
if BM25Okapi is not None:
|
| 197 |
+
joblib.dump(all_tokens, BM25_TOK_PATH)
|
| 198 |
+
meta.to_parquet(RAG_META_PATH, index=False)
|
| 199 |
+
|
| 200 |
+
return vectorizer, X_tfidf, meta, all_tokens, emb
|
| 201 |
+
|
| 202 |
+
tfidf_vectorizer, tfidf_matrix, rag_meta, bm25_tokens, emb_matrix = build_or_load_hybrid(
|
| 203 |
+
LOCAL_PDF_DIR
|
| 204 |
+
)
|
| 205 |
+
bm25 = BM25Okapi(bm25_tokens) if (BM25Okapi is not None and bm25_tokens is not None) else None
|
| 206 |
+
st_query_model = _safe_init_st_model(
|
| 207 |
+
os.getenv("EMB_MODEL_NAME", "sentence-transformers/all-MiniLM-L6-v2")
|
| 208 |
+
)
|
| 209 |
+
|
| 210 |
+
# -------------------------- hybrid retrieval -------------------------- #
|
| 211 |
+
|
| 212 |
+
def _extract_page(text_chunk: str) -> str:
|
| 213 |
+
m = list(re.finditer(r"\[\[PAGE=(\d+)\]\]", text_chunk or ""))
|
| 214 |
+
return m[-1].group(1) if m else "?"
|
| 215 |
+
|
| 216 |
+
def hybrid_search(
|
| 217 |
+
query: str,
|
| 218 |
+
k: int = 8,
|
| 219 |
+
w_tfidf: float = W_TFIDF_DEFAULT,
|
| 220 |
+
w_bm25: float = W_BM25_DEFAULT,
|
| 221 |
+
w_emb: float = W_EMB_DEFAULT,
|
| 222 |
+
) -> pd.DataFrame:
|
| 223 |
+
if rag_meta is None or rag_meta.empty:
|
| 224 |
+
return pd.DataFrame()
|
| 225 |
+
|
| 226 |
+
n_chunks = len(rag_meta)
|
| 227 |
+
|
| 228 |
+
# dense scores
|
| 229 |
+
if USE_DENSE and st_query_model is not None and emb_matrix is not None and w_emb > 0:
|
| 230 |
+
try:
|
| 231 |
+
from sklearn.preprocessing import normalize as sk_normalize
|
| 232 |
+
q_emb = st_query_model.encode([query], convert_to_numpy=True)
|
| 233 |
+
q_emb = sk_normalize(q_emb)[0]
|
| 234 |
+
dense_scores = emb_matrix @ q_emb
|
| 235 |
+
except Exception as e:
|
| 236 |
+
print("Dense query encoding failed:", e)
|
| 237 |
+
dense_scores = np.zeros(n_chunks)
|
| 238 |
+
w_emb = 0.0
|
| 239 |
+
else:
|
| 240 |
+
dense_scores = np.zeros(n_chunks)
|
| 241 |
+
w_emb = 0.0
|
| 242 |
+
|
| 243 |
+
# tf-idf
|
| 244 |
+
if tfidf_vectorizer is not None and tfidf_matrix is not None:
|
| 245 |
+
q_vec = tfidf_vectorizer.transform([query])
|
| 246 |
+
tfidf_scores = (tfidf_matrix @ q_vec.T).toarray().ravel()
|
| 247 |
+
else:
|
| 248 |
+
tfidf_scores = np.zeros(n_chunks)
|
| 249 |
+
w_tfidf = 0.0
|
| 250 |
+
|
| 251 |
+
# bm25
|
| 252 |
+
if bm25 is not None:
|
| 253 |
+
q_tokens = [t.lower() for t in TOKEN_RE.findall(query)]
|
| 254 |
+
bm25_scores = np.array(bm25.get_scores(q_tokens), dtype=float)
|
| 255 |
+
else:
|
| 256 |
+
bm25_scores = np.zeros(n_chunks)
|
| 257 |
+
w_bm25 = 0.0
|
| 258 |
+
|
| 259 |
+
def _norm(x):
|
| 260 |
+
x = np.asarray(x, dtype=float)
|
| 261 |
+
if np.allclose(x.max(), x.min()):
|
| 262 |
+
return np.zeros_like(x)
|
| 263 |
+
return (x - x.min()) / (x.max() - x.min())
|
| 264 |
+
|
| 265 |
+
s_dense = _norm(dense_scores)
|
| 266 |
+
s_tfidf = _norm(tfidf_scores)
|
| 267 |
+
s_bm25 = _norm(bm25_scores)
|
| 268 |
+
|
| 269 |
+
total_w = (w_tfidf + w_bm25 + w_emb) or 1.0
|
| 270 |
+
w_tfidf, w_bm25, w_emb = (
|
| 271 |
+
w_tfidf / total_w,
|
| 272 |
+
w_bm25 / total_w,
|
| 273 |
+
w_emb / total_w,
|
| 274 |
+
)
|
| 275 |
+
|
| 276 |
+
combo = w_emb * s_dense + w_tfidf * s_tfidf + w_bm25 * s_bm25
|
| 277 |
+
idx = np.argsort(-combo)[:k]
|
| 278 |
+
|
| 279 |
+
hits = rag_meta.iloc[idx].copy()
|
| 280 |
+
hits["score_dense"] = s_dense[idx]
|
| 281 |
+
hits["score_tfidf"] = s_tfidf[idx]
|
| 282 |
+
hits["score_bm25"] = s_bm25[idx]
|
| 283 |
+
hits["score"] = combo[idx]
|
| 284 |
+
return hits.reset_index(drop=True)
|
| 285 |
+
|
| 286 |
+
# --------------------- MMR sentence selection --------------------- #
|
| 287 |
+
|
| 288 |
+
def split_sentences(text: str) -> List[str]:
|
| 289 |
+
sents = sent_split(text)
|
| 290 |
+
return [s for s in sents if 6 <= len(s.split()) <= 60]
|
| 291 |
+
|
| 292 |
+
def mmr_select_sentences(
|
| 293 |
+
question: str,
|
| 294 |
+
hits: pd.DataFrame,
|
| 295 |
+
top_n: int = 4,
|
| 296 |
+
pool_per_chunk: int = 6,
|
| 297 |
+
lambda_div: float = 0.7,
|
| 298 |
+
) -> List[Dict[str, Any]]:
|
| 299 |
+
pool = []
|
| 300 |
+
for _, row in hits.iterrows():
|
| 301 |
+
doc = Path(row["doc_path"]).name
|
| 302 |
+
page = _extract_page(row["text"])
|
| 303 |
+
sents = split_sentences(row["text"])
|
| 304 |
+
if not sents:
|
| 305 |
+
continue
|
| 306 |
+
for s in sents[:max(1, int(pool_per_chunk))]:
|
| 307 |
+
pool.append({"sent": s, "doc": doc, "page": page})
|
| 308 |
+
if not pool:
|
| 309 |
+
return []
|
| 310 |
+
|
| 311 |
+
sent_texts = [p["sent"] for p in pool]
|
| 312 |
+
use_dense = USE_DENSE and st_query_model is not None
|
| 313 |
+
|
| 314 |
+
try:
|
| 315 |
+
if use_dense:
|
| 316 |
+
from sklearn.preprocessing import normalize as sk_normalize
|
| 317 |
+
enc = st_query_model.encode([question] + sent_texts, convert_to_numpy=True)
|
| 318 |
+
q_vec = sk_normalize(enc[:1])[0]
|
| 319 |
+
S = sk_normalize(enc[1:])
|
| 320 |
+
rel = S @ q_vec
|
| 321 |
+
def sim_fn(i, j): return float(S[i] @ S[j])
|
| 322 |
+
else:
|
| 323 |
+
from sklearn.feature_extraction.text import TfidfVectorizer
|
| 324 |
+
vect = TfidfVectorizer().fit(sent_texts + [question])
|
| 325 |
+
Q = vect.transform([question])
|
| 326 |
+
S = vect.transform(sent_texts)
|
| 327 |
+
rel = (S @ Q.T).toarray().ravel()
|
| 328 |
+
def sim_fn(i, j):
|
| 329 |
+
num = (S[i] @ S[j].T)
|
| 330 |
+
return float(num.toarray()[0, 0]) if hasattr(num, "toarray") else float(num)
|
| 331 |
+
except Exception:
|
| 332 |
+
rel = np.ones(len(sent_texts))
|
| 333 |
+
def sim_fn(i, j): return 0.0
|
| 334 |
+
|
| 335 |
+
lambda_div = float(np.clip(lambda_div, 0.0, 1.0))
|
| 336 |
+
|
| 337 |
+
remain = list(range(len(pool)))
|
| 338 |
+
first = int(np.argmax(rel))
|
| 339 |
+
selected_idx = [first]
|
| 340 |
+
selected = [pool[first]]
|
| 341 |
+
remain.remove(first)
|
| 342 |
+
|
| 343 |
+
max_pick = min(int(top_n), len(pool))
|
| 344 |
+
while len(selected) < max_pick and remain:
|
| 345 |
+
cand_scores: List[Tuple[float, int]] = []
|
| 346 |
+
for i in remain:
|
| 347 |
+
div_i = max(sim_fn(i, j) for j in selected_idx) if selected_idx else 0.0
|
| 348 |
+
score = lambda_div * float(rel[i]) - (1.0 - lambda_div) * div_i
|
| 349 |
+
cand_scores.append((score, i))
|
| 350 |
+
cand_scores.sort(reverse=True)
|
| 351 |
+
_, best_i = cand_scores[0]
|
| 352 |
+
selected_idx.append(best_i)
|
| 353 |
+
selected.append(pool[best_i])
|
| 354 |
+
remain.remove(best_i)
|
| 355 |
+
|
| 356 |
+
return selected
|
| 357 |
+
|
| 358 |
+
def compose_extractive(selected: List[Dict[str, Any]]) -> str:
|
| 359 |
+
if not selected:
|
| 360 |
+
return ""
|
| 361 |
+
return " ".join(f"{s['sent']} ({s['doc']}, p.{s['page']})" for s in selected)
|
| 362 |
+
|
| 363 |
+
# --------------------------- logging helpers --------------------------- #
|
| 364 |
+
|
| 365 |
+
OPENAI_IN_COST_PER_1K = float(os.getenv("OPENAI_COST_IN_PER_1K", "0"))
|
| 366 |
+
OPENAI_OUT_COST_PER_1K = float(os.getenv("OPENAI_COST_OUT_PER_1K", "0"))
|
| 367 |
+
|
| 368 |
+
def _safe_write_jsonl(path: Path, record: dict):
|
| 369 |
+
try:
|
| 370 |
+
with open(path, "a", encoding="utf-8") as f:
|
| 371 |
+
f.write(json.dumps(record, ensure_ascii=False) + "\n")
|
| 372 |
+
except Exception as e:
|
| 373 |
+
print("[Log] write failed:", e)
|
| 374 |
+
|
| 375 |
+
def _calc_cost_usd(prompt_toks, completion_toks):
|
| 376 |
+
if prompt_toks is None or completion_toks is None:
|
| 377 |
+
return None
|
| 378 |
+
return (prompt_toks / 1000.0) * OPENAI_IN_COST_PER_1K + (
|
| 379 |
+
completion_toks / 1000.0
|
| 380 |
+
) * OPENAI_OUT_COST_PER_1K
|
| 381 |
+
|
| 382 |
+
# ------------------------ optional LLM synthesis ------------------------ #
|
| 383 |
+
|
| 384 |
+
def synthesize_with_llm(
|
| 385 |
+
question: str,
|
| 386 |
+
sentence_lines: List[str],
|
| 387 |
+
model: Optional[str] = None,
|
| 388 |
+
temperature: float = 0.2,
|
| 389 |
+
):
|
| 390 |
+
if not LLM_AVAILABLE:
|
| 391 |
+
return None, None
|
| 392 |
+
client = OpenAI(api_key=OPENAI_API_KEY)
|
| 393 |
+
model = model or OPENAI_MODEL
|
| 394 |
+
|
| 395 |
+
SYSTEM_PROMPT = (
|
| 396 |
+
"You are a scientific assistant for self-sensing cementitious materials.\n"
|
| 397 |
+
"Answer STRICTLY using the provided sentences.\n"
|
| 398 |
+
"Do not invent facts. Keep it concise (3–6 sentences).\n"
|
| 399 |
+
"Retain inline citations like (Doc.pdf, p.X) exactly as given."
|
| 400 |
+
)
|
| 401 |
+
user_prompt = (
|
| 402 |
+
f"Question: {question}\n\n"
|
| 403 |
+
"Use ONLY these sentences to answer; keep their inline citations:\n"
|
| 404 |
+
+ "\n".join(f"- {s}" for s in sentence_lines)
|
| 405 |
+
)
|
| 406 |
+
|
| 407 |
+
try:
|
| 408 |
+
resp = client.responses.create(
|
| 409 |
+
model=model,
|
| 410 |
+
input=[
|
| 411 |
+
{"role": "system", "content": SYSTEM_PROMPT},
|
| 412 |
+
{"role": "user", "content": user_prompt},
|
| 413 |
+
],
|
| 414 |
+
temperature=temperature,
|
| 415 |
+
)
|
| 416 |
+
out_text = getattr(resp, "output_text", None) or str(resp)
|
| 417 |
+
usage = None
|
| 418 |
+
try:
|
| 419 |
+
u = getattr(resp, "usage", None)
|
| 420 |
+
if u:
|
| 421 |
+
pt = getattr(u, "prompt_tokens", None) if hasattr(u, "prompt_tokens") else u.get("prompt_tokens", None)
|
| 422 |
+
ct = getattr(u, "completion_tokens", None) if hasattr(u, "completion_tokens") else u.get("completion_tokens", None)
|
| 423 |
+
usage = {"prompt_tokens": pt, "completion_tokens": ct}
|
| 424 |
+
except Exception:
|
| 425 |
+
usage = None
|
| 426 |
+
return out_text, usage
|
| 427 |
+
except Exception:
|
| 428 |
+
return None, None
|
| 429 |
+
|
| 430 |
+
# ------------------- main RAG reply (with config_id) ------------------- #
|
| 431 |
+
|
| 432 |
+
def rag_reply(
|
| 433 |
+
question: str,
|
| 434 |
+
k: int = 8,
|
| 435 |
+
n_sentences: int = 4,
|
| 436 |
+
include_passages: bool = False,
|
| 437 |
+
use_llm: bool = False,
|
| 438 |
+
model: Optional[str] = None,
|
| 439 |
+
temperature: float = 0.2,
|
| 440 |
+
strict_quotes_only: bool = False,
|
| 441 |
+
w_tfidf: float = W_TFIDF_DEFAULT,
|
| 442 |
+
w_bm25: float = W_BM25_DEFAULT,
|
| 443 |
+
w_emb: float = W_EMB_DEFAULT,
|
| 444 |
+
config_id: Optional[str] = None,
|
| 445 |
+
) -> str:
|
| 446 |
+
run_id = str(uuid.uuid4())
|
| 447 |
+
t0_total = time.time()
|
| 448 |
+
t0_retr = time.time()
|
| 449 |
+
|
| 450 |
+
hits = hybrid_search(
|
| 451 |
+
question,
|
| 452 |
+
k=int(k),
|
| 453 |
+
w_tfidf=float(w_tfidf),
|
| 454 |
+
w_bm25=float(w_bm25),
|
| 455 |
+
w_emb=float(w_emb),
|
| 456 |
+
)
|
| 457 |
+
t1_retr = time.time()
|
| 458 |
+
latency_ms_retriever = int((t1_retr - t0_retr) * 1000)
|
| 459 |
+
|
| 460 |
+
if hits is None or hits.empty:
|
| 461 |
+
final = "No indexed PDFs found."
|
| 462 |
+
record = {
|
| 463 |
+
"run_id": run_id,
|
| 464 |
+
"ts": int(time.time() * 1000),
|
| 465 |
+
"inputs": {
|
| 466 |
+
"question": question,
|
| 467 |
+
"top_k": int(k),
|
| 468 |
+
"n_sentences": int(n_sentences),
|
| 469 |
+
"w_tfidf": float(w_tfidf),
|
| 470 |
+
"w_bm25": float(w_bm25),
|
| 471 |
+
"w_emb": float(w_emb),
|
| 472 |
+
"use_llm": bool(use_llm),
|
| 473 |
+
"model": model,
|
| 474 |
+
"temperature": float(temperature),
|
| 475 |
+
"config_id": config_id,
|
| 476 |
+
},
|
| 477 |
+
"retrieval": {"hits": [], "latency_ms_retriever": latency_ms_retriever},
|
| 478 |
+
"output": {"final_answer": final, "used_sentences": []},
|
| 479 |
+
"latency_ms_total": int((time.time() - t0_total) * 1000),
|
| 480 |
+
"openai": None,
|
| 481 |
+
}
|
| 482 |
+
_safe_write_jsonl(LOG_PATH, record)
|
| 483 |
+
return final
|
| 484 |
+
|
| 485 |
+
selected = mmr_select_sentences(
|
| 486 |
+
question, hits, top_n=int(n_sentences), pool_per_chunk=6, lambda_div=0.7
|
| 487 |
+
)
|
| 488 |
+
header_cites = "; ".join(
|
| 489 |
+
f"{Path(r['doc_path']).name} (p.{_extract_page(r['text'])})"
|
| 490 |
+
for _, r in hits.head(6).iterrows()
|
| 491 |
+
)
|
| 492 |
+
|
| 493 |
+
srcs = {Path(r["doc_path"]).name for _, r in hits.iterrows()}
|
| 494 |
+
coverage_note = (
|
| 495 |
+
""
|
| 496 |
+
if len(srcs) >= 3
|
| 497 |
+
else f"\n\n> Note: Only {len(srcs)} unique source(s). Add more PDFs or increase Top-K."
|
| 498 |
+
)
|
| 499 |
+
|
| 500 |
+
retr_list = []
|
| 501 |
+
for _, r in hits.iterrows():
|
| 502 |
+
retr_list.append(
|
| 503 |
+
{
|
| 504 |
+
"doc": Path(r["doc_path"]).name,
|
| 505 |
+
"page": _extract_page(r["text"]),
|
| 506 |
+
"score_tfidf": float(r.get("score_tfidf", 0.0)),
|
| 507 |
+
"score_bm25": float(r.get("score_bm25", 0.0)),
|
| 508 |
+
"score_dense": float(r.get("score_dense", 0.0)),
|
| 509 |
+
"combo_score": float(r.get("score", 0.0)),
|
| 510 |
+
}
|
| 511 |
+
)
|
| 512 |
+
|
| 513 |
+
# retrieval-only / strict quotations (useful for grid eval)
|
| 514 |
+
if strict_quotes_only:
|
| 515 |
+
if not selected:
|
| 516 |
+
final = (
|
| 517 |
+
f"**Quoted Passages:**\n\n---\n"
|
| 518 |
+
+ "\n\n".join(hits["text"].tolist()[:2])
|
| 519 |
+
+ f"\n\n**Citations:** {header_cites}{coverage_note}"
|
| 520 |
+
)
|
| 521 |
+
else:
|
| 522 |
+
final = "**Quoted Passages:**\n- " + "\n- ".join(
|
| 523 |
+
f"{s['sent']} ({s['doc']}, p.{s['page']})" for s in selected
|
| 524 |
+
)
|
| 525 |
+
final += f"\n\n**Citations:** {header_cites}{coverage_note}"
|
| 526 |
+
if include_passages:
|
| 527 |
+
final += "\n\n---\n" + "\n\n".join(hits["text"].tolist()[:2])
|
| 528 |
+
|
| 529 |
+
record = {
|
| 530 |
+
"run_id": run_id,
|
| 531 |
+
"ts": int(time.time() * 1000),
|
| 532 |
+
"inputs": {
|
| 533 |
+
"question": question,
|
| 534 |
+
"top_k": int(k),
|
| 535 |
+
"n_sentences": int(n_sentences),
|
| 536 |
+
"w_tfidf": float(w_tfidf),
|
| 537 |
+
"w_bm25": float(w_bm25),
|
| 538 |
+
"w_emb": float(w_emb),
|
| 539 |
+
"use_llm": False,
|
| 540 |
+
"model": None,
|
| 541 |
+
"temperature": float(temperature),
|
| 542 |
+
"config_id": config_id,
|
| 543 |
+
},
|
| 544 |
+
"retrieval": {"hits": retr_list, "latency_ms_retriever": latency_ms_retriever},
|
| 545 |
+
"output": {
|
| 546 |
+
"final_answer": final,
|
| 547 |
+
"used_sentences": [
|
| 548 |
+
{"sent": s["sent"], "doc": s["doc"], "page": s["page"]}
|
| 549 |
+
for s in selected
|
| 550 |
+
],
|
| 551 |
+
},
|
| 552 |
+
"latency_ms_total": int((time.time() - t0_total) * 1000),
|
| 553 |
+
"openai": None,
|
| 554 |
+
}
|
| 555 |
+
_safe_write_jsonl(LOG_PATH, record)
|
| 556 |
+
return final
|
| 557 |
+
|
| 558 |
+
# extractive / LLM synthesis
|
| 559 |
+
extractive = compose_extractive(selected)
|
| 560 |
+
llm_usage = None
|
| 561 |
+
llm_latency_ms = None
|
| 562 |
+
|
| 563 |
+
if use_llm and selected:
|
| 564 |
+
lines = [f"{s['sent']} ({s['doc']}, p.{s['page']})" for s in selected]
|
| 565 |
+
t0_llm = time.time()
|
| 566 |
+
llm_text, llm_usage = synthesize_with_llm(
|
| 567 |
+
question, lines, model=model, temperature=temperature
|
| 568 |
+
)
|
| 569 |
+
t1_llm = time.time()
|
| 570 |
+
llm_latency_ms = int((t1_llm - t0_llm) * 1000)
|
| 571 |
+
|
| 572 |
+
if llm_text:
|
| 573 |
+
final = (
|
| 574 |
+
f"**Answer (LLM synthesis):** {llm_text}\n\n"
|
| 575 |
+
f"**Citations:** {header_cites}{coverage_note}"
|
| 576 |
+
)
|
| 577 |
+
if include_passages:
|
| 578 |
+
final += "\n\n---\n" + "\n\n".join(hits["text"].tolist()[:2])
|
| 579 |
+
else:
|
| 580 |
+
if not extractive:
|
| 581 |
+
final = (
|
| 582 |
+
f"**Answer:** Here are relevant passages.\n\n"
|
| 583 |
+
f"**Citations:** {header_cites}{coverage_note}\n\n---\n"
|
| 584 |
+
+ "\n\n".join(hits["text"].tolist()[:2])
|
| 585 |
+
)
|
| 586 |
+
else:
|
| 587 |
+
final = (
|
| 588 |
+
f"**Answer:** {extractive}\n\n"
|
| 589 |
+
f"**Citations:** {header_cites}{coverage_note}"
|
| 590 |
+
)
|
| 591 |
+
if include_passages:
|
| 592 |
+
final += "\n\n---\n" + "\n\n".join(hits["text"].tolist()[:2])
|
| 593 |
+
else:
|
| 594 |
+
if not extractive:
|
| 595 |
+
final = (
|
| 596 |
+
f"**Answer:** Here are relevant passages.\n\n"
|
| 597 |
+
f"**Citations:** {header_cites}{coverage_note}\n\n---\n"
|
| 598 |
+
+ "\n\n".join(hits["text"].tolist()[:2])
|
| 599 |
+
)
|
| 600 |
+
else:
|
| 601 |
+
final = (
|
| 602 |
+
f"**Answer:** {extractive}\n\n"
|
| 603 |
+
f"**Citations:** {header_cites}{coverage_note}"
|
| 604 |
+
)
|
| 605 |
+
if include_passages:
|
| 606 |
+
final += "\n\n---\n" + "\n\n".join(hits["text"].tolist()[:2])
|
| 607 |
+
|
| 608 |
+
prompt_toks = llm_usage.get("prompt_tokens") if llm_usage else None
|
| 609 |
+
completion_toks = llm_usage.get("completion_tokens") if llm_usage else None
|
| 610 |
+
cost_usd = _calc_cost_usd(prompt_toks, completion_toks)
|
| 611 |
+
|
| 612 |
+
total_ms = int((time.time() - t0_total) * 1000)
|
| 613 |
+
record = {
|
| 614 |
+
"run_id": run_id,
|
| 615 |
+
"ts": int(time.time() * 1000),
|
| 616 |
+
"inputs": {
|
| 617 |
+
"question": question,
|
| 618 |
+
"top_k": int(k),
|
| 619 |
+
"n_sentences": int(n_sentences),
|
| 620 |
+
"w_tfidf": float(w_tfidf),
|
| 621 |
+
"w_bm25": float(w_bm25),
|
| 622 |
+
"w_emb": float(w_emb),
|
| 623 |
+
"use_llm": bool(use_llm),
|
| 624 |
+
"model": model,
|
| 625 |
+
"temperature": float(temperature),
|
| 626 |
+
"config_id": config_id,
|
| 627 |
+
},
|
| 628 |
+
"retrieval": {"hits": retr_list, "latency_ms_retriever": latency_ms_retriever},
|
| 629 |
+
"output": {
|
| 630 |
+
"final_answer": final,
|
| 631 |
+
"used_sentences": [
|
| 632 |
+
{"sent": s["sent"], "doc": s["doc"], "page": s["page"]}
|
| 633 |
+
for s in selected
|
| 634 |
+
],
|
| 635 |
+
},
|
| 636 |
+
"latency_ms_total": total_ms,
|
| 637 |
+
"latency_ms_llm": llm_latency_ms,
|
| 638 |
+
"openai": {
|
| 639 |
+
"prompt_tokens": prompt_toks,
|
| 640 |
+
"completion_tokens": completion_toks,
|
| 641 |
+
"cost_usd": cost_usd,
|
| 642 |
+
}
|
| 643 |
+
if use_llm
|
| 644 |
+
else None,
|
| 645 |
+
}
|
| 646 |
+
_safe_write_jsonl(LOG_PATH, record)
|
| 647 |
+
return final
|
| 648 |
+
|
| 649 |
+
# --------------- automated grid evaluation over weights --------------- #
|
| 650 |
+
|
| 651 |
+
def run_weight_grid_eval(
|
| 652 |
+
gold_csv: str,
|
| 653 |
+
weight_grid: List[Dict[str, float]],
|
| 654 |
+
k: int = 8,
|
| 655 |
+
n_sentences: int = 4,
|
| 656 |
+
) -> None:
|
| 657 |
+
"""
|
| 658 |
+
Automatically evaluate many (w_tfidf, w_bm25, w_emb) combinations
|
| 659 |
+
on the full gold question set.
|
| 660 |
+
|
| 661 |
+
- Reads questions from gold_csv (column 'question')
|
| 662 |
+
- For each configuration in weight_grid, calls rag_reply(...)
|
| 663 |
+
with use_llm=False and strict_quotes_only=True
|
| 664 |
+
- All runs are logged into rag_logs.jsonl with a 'config_id'
|
| 665 |
+
and the exact weights.
|
| 666 |
+
"""
|
| 667 |
+
gold_df = pd.read_csv(gold_csv)
|
| 668 |
+
if "question" not in gold_df.columns:
|
| 669 |
+
raise ValueError("gold_csv must contain a 'question' column.")
|
| 670 |
+
questions = gold_df["question"].astype(str).tolist()
|
| 671 |
+
|
| 672 |
+
for cfg in weight_grid:
|
| 673 |
+
wt = float(cfg.get("w_tfidf", 0.0))
|
| 674 |
+
wb = float(cfg.get("w_bm25", 0.0))
|
| 675 |
+
we = float(cfg.get("w_emb", 0.0))
|
| 676 |
+
cid = cfg.get("id") or f"tfidf{wt}_bm25{wb}_emb{we}"
|
| 677 |
+
|
| 678 |
+
print(
|
| 679 |
+
f"\n[GridEval] Running config {cid} "
|
| 680 |
+
f"(w_tfidf={wt}, w_bm25={wb}, w_emb={we}, k={k})"
|
| 681 |
+
)
|
| 682 |
+
|
| 683 |
+
for q in questions:
|
| 684 |
+
_ = rag_reply(
|
| 685 |
+
question=q,
|
| 686 |
+
k=int(k),
|
| 687 |
+
n_sentences=int(n_sentences),
|
| 688 |
+
include_passages=False,
|
| 689 |
+
use_llm=False,
|
| 690 |
+
model=None,
|
| 691 |
+
temperature=0.0,
|
| 692 |
+
strict_quotes_only=True,
|
| 693 |
+
w_tfidf=wt,
|
| 694 |
+
w_bm25=wb,
|
| 695 |
+
w_emb=we,
|
| 696 |
+
config_id=cid,
|
| 697 |
+
)
|
| 698 |
+
|
| 699 |
+
print("✅ RAG core + grid evaluation helpers loaded.")
|