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Link and cite version 2 of the NTv3 preprint
Browse filesVersion 2 of the NTv3 preprint is on bioRxiv (posted 2026-10-29). This fills the paper link and the citation that were marked `TBC`. The link is unversioned, so it resolves to the latest version; the BibTeX (key `ntv3`, year 2026) carries the v2 title and authors, checked against the preprint source. The same entry goes into the nucleotide-transformer repo.
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README.md
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@@ -216,7 +216,7 @@ in their materials do not always match the current paper. Where they differ, the
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## π Links
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- π **Paper:**
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- π» **JAX model code:** [github.com/instadeepai/nucleotide-transformer](https://github.com/instadeepai/nucleotide-transformer)
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- π― **Model collection:** [NTv3 collection](https://huggingface.co/collections/InstaDeepAI/ntv3)
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- π **Benchmark dataset:** [`InstaDeepAI/NTv3_benchmark_dataset_revised`](https://huggingface.co/datasets/InstaDeepAI/NTv3_benchmark_dataset_revised)
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## π Citation
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`TBC`. To be added on publication.
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```bibtex
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@article{ntv3,
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title = {
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author = {
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journal = {
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year = {
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}
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```
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## π Links
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- π **Paper:** [bioRxiv preprint](https://www.biorxiv.org/content/10.64898/2025.12.22.695963)
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- π» **JAX model code:** [github.com/instadeepai/nucleotide-transformer](https://github.com/instadeepai/nucleotide-transformer)
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- π― **Model collection:** [NTv3 collection](https://huggingface.co/collections/InstaDeepAI/ntv3)
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- π **Benchmark dataset:** [`InstaDeepAI/NTv3_benchmark_dataset_revised`](https://huggingface.co/datasets/InstaDeepAI/NTv3_benchmark_dataset_revised)
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## π Citation
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```bibtex
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@article{ntv3,
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title = {A multispecies foundation model for genome function prediction, gene annotation and sequence design},
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author = {Boshar, Sam and Evans, Benjamin and Tang, Ziqi and Adel, Yanis and Bornachot, Yohan and Sidbon, Shawn and Lorbeer, Franziska K. and Picard, Armand and Rajesh, Chandana and Seitz, Evan and Emms, David and Mendoza-Revilla, Javier and Hernandez, Ariana and Al-Ani, Fatimah and Karch, Tristan and Schiff, Yair and Lopez, Marie and Laterre, Alexandre and Beguir, Karim and Koo, Peter and Kuleshov, Volodymyr and Stark, Alexander and de Almeida, Bernardo P. and Pierrot, Thomas},
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journal = {bioRxiv},
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year = {2026},
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doi = {10.64898/2025.12.22.695963},
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url = {https://www.biorxiv.org/content/10.64898/2025.12.22.695963}
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}
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```
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tabs/home.html
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<div class="card">
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<h2>π Links</h2>
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<ul>
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<li>
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<li><a href="https://github.com/instadeepai/nucleotide-transformer" target="_blank" rel="noopener noreferrer">π» JAX model code (GitHub)</a></li>
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<li><a href="https://huggingface.co/collections/InstaDeepAI/ntv3" target="_blank" rel="noopener noreferrer">π― HF model collection</a></li>
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<li><a href="https://huggingface.co/datasets/InstaDeepAI/NTv3_benchmark_dataset_revised" target="_blank" rel="noopener noreferrer">π NTv3 benchmark dataset</a></li>
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<div class="card">
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<h2>π Links</h2>
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<ul>
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<li><a href="https://www.biorxiv.org/content/10.64898/2025.12.22.695963" target="_blank" rel="noopener noreferrer">π Paper (bioRxiv preprint)</a></li>
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<li><a href="https://github.com/instadeepai/nucleotide-transformer" target="_blank" rel="noopener noreferrer">π» JAX model code (GitHub)</a></li>
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<li><a href="https://huggingface.co/collections/InstaDeepAI/ntv3" target="_blank" rel="noopener noreferrer">π― HF model collection</a></li>
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<li><a href="https://huggingface.co/datasets/InstaDeepAI/NTv3_benchmark_dataset_revised" target="_blank" rel="noopener noreferrer">π NTv3 benchmark dataset</a></li>
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