ntv3_benchmark / data /bed_dataset.csv
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feat: update with real data points
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MCC,model_name,species,datasets
0.334637850522995,NTv2 500M,cattle,intron
0.1238768473267555,BPNet arch. 6M,cattle,intron
0.383470207452774,Residual CNN 44M,cattle,intron
0.3828243613243103,HyenaDNA 7M,cattle,intron
0.4733810424804687,Caduceus 7M,cattle,intron
0.4315277338027954,Evo2 1B,cattle,intron
0.5455867648124695,NTv3 8M (pre),cattle,intron
0.5453664064407349,NTv3 100M (pre),cattle,intron
0.5628412365913391,NTv3 650M (pre),cattle,intron
0.5682631134986877,NTv3 650M (post),cattle,intron
0.3689357042312622,NTv2 500M,cattle,exon
0.3250860869884491,BPNet arch. 6M,cattle,exon
0.4674676060676574,Residual CNN 44M,cattle,exon
0.2207767516374588,HyenaDNA 7M,cattle,exon
0.4960922300815582,Caduceus 7M,cattle,exon
0.4969632029533386,Evo2 1B,cattle,exon
0.5432836413383484,NTv3 8M (pre),cattle,exon
0.5531933307647705,NTv3 100M (pre),cattle,exon
0.591151773929596,NTv3 650M (pre),cattle,exon
0.6253225207328796,NTv3 650M (post),cattle,exon
0.118808165192604,NTv2 500M,cattle,splice acceptor
0.4715546369552612,BPNet arch. 6M,cattle,splice acceptor
0.6620649099349976,Residual CNN 44M,cattle,splice acceptor
0.104436807334423,HyenaDNA 7M,cattle,splice acceptor
0.7064619660377502,Caduceus 7M,cattle,splice acceptor
0.2085049450397491,Evo2 1B,cattle,splice acceptor
0.7254849076271057,NTv3 8M (pre),cattle,splice acceptor
0.7404072880744934,NTv3 100M (pre),cattle,splice acceptor
0.7732946872711182,NTv3 650M (pre),cattle,splice acceptor
0.7679624557495117,NTv3 650M (post),cattle,splice acceptor
0.1412438601255417,NTv2 500M,cattle,start codon
0.1490814685821533,BPNet arch. 6M,cattle,start codon
0.3243320286273956,Residual CNN 44M,cattle,start codon
0.056509330868721,HyenaDNA 7M,cattle,start codon
0.3455557227134704,Caduceus 7M,cattle,start codon
0.1030694246292114,Evo2 1B,cattle,start codon
0.5275959968566895,NTv3 8M (pre),cattle,start codon
0.4962065815925598,NTv3 100M (pre),cattle,start codon
0.5591813921928406,NTv3 650M (pre),cattle,start codon
0.5492052435874939,NTv3 650M (post),cattle,start codon
0.5492052435874939,NTv2 500M,cattle,start codon
0.1015273928642273,BPNet arch. 6M,cattle,intron
0.3299930691719055,Residual CNN 44M,cattle,intron
0.3826011121273041,HyenaDNA 7M,cattle,intron
0.5564854741096497,Caduceus 7M,cattle,intron
0.5564854741096497,NTv2 500M,cattle,intron
0.323502242565155,BPNet arch. 6M,cattle,exon
0.519285261631012,Residual CNN 44M,cattle,exon
0.1038060635328292,HyenaDNA 7M,cattle,splice acceptor
0.1038060635328292,Caduceus 7M,cattle,splice acceptor
0.1038060635328292,NTv2 500M,cattle,splice acceptor
0.4435675740242004,BPNet arch. 6M,cattle,splice acceptor
0.6590774655342102,Residual CNN 44M,cattle,splice acceptor
0.1038060635328292,HyenaDNA 7M,cattle,splice acceptor
0.1038060635328292,Caduceus 7M,cattle,splice acceptor
0.1038060635328292,NTv2 500M,cattle,splice acceptor
0.0901669710874557,BPNet arch. 6M,cattle,start codon
0.3548502624034881,Residual CNN 44M,cattle,start codon
0.0545537285506725,HyenaDNA 7M,cattle,start codon
0.0545537285506725,Caduceus 7M,cattle,start codon
0.0639578104019165,BPNet arch. 6M,cattle,start codon
0.3266464471817016,Residual CNN 44M,cattle,intron
0.3266464471817016,HyenaDNA 7M,cattle,intron
0.3266464471817016,Caduceus 7M,cattle,intron
0.1383400112390518,BPNet arch. 6M,cattle,intron
0.4856111407279968,Residual CNN 44M,cattle,exon
0.4856111407279968,HyenaDNA 7M,cattle,exon
0.4856111407279968,Caduceus 7M,cattle,exon
0.4220209121704101,BPNet arch. 6M,cattle,splice acceptor
0.689546525478363,Residual CNN 44M,cattle,splice acceptor
0.689546525478363,HyenaDNA 7M,cattle,splice acceptor
0.689546525478363,Caduceus 7M,cattle,splice acceptor
0.0930091217160224,BPNet arch. 6M,cattle,start codon
0.423166275024414,Residual CNN 44M,cattle,start codon
0.423166275024414,HyenaDNA 7M,cattle,start codon
0.423166275024414,Caduceus 7M,cattle,start codon
0.4777896404266357,NTv2 500M,tomato,intron
0.3216900527477264,BPNet arch. 6M,tomato,intron
0.46840900182724,Residual CNN 44M,tomato,intron
0.5251263380050659,PlantCAD2 88M,tomato,intron
0.747674286365509,Evo2 1B,tomato,intron
0.6858112812042236,NTv3 8M (pre),tomato,intron
0.7038365006446838,NTv3 100M (pre),tomato,intron
0.7481895685195923,NTv3 650M (pre),tomato,intron
0.7458349466323853,NTv3 650M (post),tomato,intron
0.6147475838661194,NTv2 500M,tomato,exon
0.4551227986812591,BPNet arch. 6M,tomato,exon
0.5068296194076538,Residual CNN 44M,tomato,exon
0.7256030440330505,PlantCAD2 88M,tomato,exon
0.7006198763847351,Evo2 1B,tomato,exon
0.7537696361541748,NTv3 8M (pre),tomato,exon
0.7484462857246399,NTv3 100M (pre),tomato,exon
0.764011561870575,NTv3 650M (pre),tomato,exon
0.7750575542449951,NTv3 650M (post),tomato,exon
0.1691933125257492,NTv2 500M,tomato,splice acceptor
0.125656172633171,BPNet arch. 6M,tomato,splice acceptor
0.4359458982944488,Residual CNN 44M,tomato,splice acceptor
0.744257926940918,PlantCAD2 88M,tomato,splice acceptor
0.3791649639606476,Evo2 1B,tomato,splice acceptor
0.6623862385749817,NTv3 8M (pre),tomato,splice acceptor
0.6843105554580688,NTv3 100M (pre),tomato,splice acceptor
0.7641868591308594,NTv3 650M (pre),tomato,splice acceptor
0.7584431767463684,NTv3 650M (post),tomato,splice acceptor
0.132934883236885,NTv2 500M,tomato,start codon
0.0,BPNet arch. 6M,tomato,start codon
0.088478960096836,Residual CNN 44M,tomato,start codon
0.2019559442996978,PlantCAD2 88M,tomato,start codon
0.1622217148542404,Evo2 1B,tomato,start codon
0.2966536581516266,NTv3 8M (pre),tomato,start codon
0.3968957066535949,NTv3 100M (pre),tomato,start codon
0.4830105900764465,NTv3 650M (pre),tomato,start codon
0.5007501244544983,NTv3 650M (post),tomato,start codon
0.6770024299621582,NTv2 500M,tomato,intron
0.2927957773208618,BPNet arch. 6M,tomato,intron
0.1383400112390518,Residual CNN 44M,tomato,intron
0.1383400112390518,PlantCAD2 88M,tomato,intron
0.5751976370811462,NTv2 500M,tomato,exon
0.3057552278041839,BPNet arch. 6M,tomato,exon
0.168193981051445,NTv2 500M,tomato,splice acceptor
0.0,BPNet arch. 6M,tomato,splice acceptor
0.4833243191242218,Residual CNN 44M,tomato,splice acceptor
0.4833243191242218,PlantCAD2 88M,tomato,splice acceptor
0.1586925536394119,NTv2 500M,tomato,start codon
0.0,BPNet arch. 6M,tomato,start codon
0.1107296794652938,Residual CNN 44M,tomato,start codon
0.1107296794652938,PlantCAD2 88M,tomato,start codon
0.3502058088779449,BPNet arch. 6M,tomato,intron
0.5514466166496277,Residual CNN 44M,tomato,intron
0.5514466166496277,PlantCAD2 88M,tomato,intron
0.3020758032798767,BPNet arch. 6M,tomato,exon
0.4746756553649902,Residual CNN 44M,tomato,exon
0.4746756553649902,PlantCAD2 88M,tomato,exon
0.0,BPNet arch. 6M,tomato,splice acceptor
0.3391502797603607,Residual CNN 44M,tomato,splice acceptor
0.3391502797603607,PlantCAD2 88M,tomato,splice acceptor
0.0639578104019165,BPNet arch. 6M,tomato,start codon
0.0914037525653839,Residual CNN 44M,tomato,start codon
0.0914037525653839,PlantCAD2 88M,tomato,start codon
0.1995969861745834,NTv2 500M,human,intron
0.0296161584556102,BPNet arch. 6M,human,intron
0.2347834408283233,Residual CNN 44M,human,intron
0.33451908826828,HyenaDNA 7M,human,intron
0.4144788980484009,Caduceus 7M,human,intron
0.0,Evo2 1B,human,intron
0.4695742726325989,NTv3 8M (pre),human,intron
0.475054919719696,NTv3 100M (pre),human,intron
0.5504136681556702,NTv3 650M (pre),human,intron
0.5643875002861023,NTv3 650M (post),human,intron
0.1995969861745834,NTv2 500M,human,intron
0.2706590592861175,BPNet arch. 6M,human,exon
0.2678671479225158,Residual CNN 44M,human,exon
0.179698497056961,HyenaDNA 7M,human,exon
0.5098947286605835,Caduceus 7M,human,exon
0.4510694444179535,Evo2 1B,human,exon
0.6089931726455688,NTv3 8M (pre),human,exon
0.6492856740951538,NTv3 100M (pre),human,exon
0.6975767016410828,NTv3 650M (pre),human,exon
0.6822624206542969,NTv3 650M (post),human,exon
0.1493269056081771,NTv2 500M,human,splice acceptor
0.3807527124881744,BPNet arch. 6M,human,splice acceptor
0.6632664203643799,Residual CNN 44M,human,splice acceptor
0.1002769619226455,HyenaDNA 7M,human,splice acceptor
0.7357247471809387,Caduceus 7M,human,splice acceptor
0.1821079105138778,Evo2 1B,human,splice acceptor
0.7726271748542786,NTv3 8M (pre),human,splice acceptor
0.77947598695755,NTv3 100M (pre),human,splice acceptor
0.8028115034103394,NTv3 650M (pre),human,splice acceptor
0.7979229092597961,NTv3 650M (post),human,splice acceptor
0.139576569199562,NTv2 500M,human,start codon
0.1334401220083236,BPNet arch. 6M,human,start codon
0.3876807987689972,Residual CNN 44M,human,start codon
0.1003016158938407,HyenaDNA 7M,human,start codon
0.3958532512187958,Caduceus 7M,human,start codon
0.1399599611759185,Evo2 1B,human,start codon
0.540923535823822,NTv3 8M (pre),human,start codon
0.5464004278182983,NTv3 100M (pre),human,start codon
0.6803378462791443,NTv3 650M (pre),human,start codon
0.7310947179794312,NTv3 650M (post),human,start codon
0.7310947179794312,NTv2 500M,human,start codon
0.0172978900372982,BPNet arch. 6M,human,intron
0.2740728259086609,Residual CNN 44M,human,intron
0.3312098085880279,HyenaDNA 7M,human,intron
0.5108950138092041,Caduceus 7M,human,intron
0.5034915208816528,NTv3 8M (pre),human,intron
0.5154411792755127,NTv3 100M (pre),human,intron
0.5814740061759949,NTv3 650M (pre),human,intron
0.5920455455780029,NTv3 650M (post),human,intron
0.5920455455780029,NTv2 500M,human,intron
0.2252149283885955,BPNet arch. 6M,human,exon
0.4010578095912933,Residual CNN 44M,human,exon
0.1851459741592407,HyenaDNA 7M,human,exon
0.4599409103393554,Caduceus 7M,human,exon
0.5931490063667297,NTv3 8M (pre),human,exon
0.6058318018913269,NTv3 100M (pre),human,exon
0.6738048791885376,NTv3 650M (pre),human,exon
0.6738048791885376,NTv3 650M (post),human,exon
0.6738048791885376,NTv2 500M,human,exon
0.3751010596752167,BPNet arch. 6M,human,splice acceptor
0.681228756904602,Residual CNN 44M,human,splice acceptor
0.0252278540283441,HyenaDNA 7M,human,splice acceptor
0.7485092878341675,Caduceus 7M,human,splice acceptor
0.7772909998893738,NTv3 8M (pre),human,splice acceptor
0.794090747833252,NTv3 100M (pre),human,splice acceptor
0.8239933252334595,NTv3 650M (pre),human,splice acceptor
0.804115891456604,NTv3 650M (post),human,splice acceptor
0.804115891456604,NTv2 500M,human,splice acceptor
0.0,BPNet arch. 6M,human,start codon
0.3292546272277832,Residual CNN 44M,human,start codon
0.0647941380739212,HyenaDNA 7M,human,start codon
0.4505241215229034,Caduceus 7M,human,start codon
0.60422682762146,NTv3 8M (pre),human,start codon
0.6015576124191284,NTv3 100M (pre),human,start codon
0.6452956795692444,NTv3 650M (pre),human,start codon
0.6761345267295837,NTv3 650M (post),human,start codon
0.0185965970158576,BPNet arch. 6M,human,intron
0.2623045742511749,Residual CNN 44M,human,intron
0.2623045742511749,HyenaDNA 7M,human,intron
0.2623045742511749,Caduceus 7M,human,intron
0.4804849028587341,NTv3 8M (pre),human,intron
0.482195496559143,NTv3 100M (pre),human,intron
0.5425574779510498,NTv3 650M (pre),human,intron
0.5443048477172852,NTv3 650M (post),human,intron
0.2360571771860122,BPNet arch. 6M,human,exon
0.2360571771860122,Residual CNN 44M,human,exon
0.2360571771860122,HyenaDNA 7M,human,exon
0.2360571771860122,Caduceus 7M,human,exon
0.6339762210845947,NTv3 8M (pre),human,exon
0.6433913111686707,NTv3 100M (pre),human,exon
0.6518793702125549,NTv3 650M (pre),human,exon
0.6812491416931152,NTv3 650M (post),human,exon
0.3842235207557678,BPNet arch. 6M,human,splice acceptor
0.6810190081596375,Residual CNN 44M,human,splice acceptor
0.6810190081596375,HyenaDNA 7M,human,splice acceptor
0.6810190081596375,Caduceus 7M,human,splice acceptor
0.7796080708503723,NTv3 8M (pre),human,splice acceptor
0.7596970200538635,NTv3 100M (pre),human,splice acceptor
0.7915040850639343,NTv3 650M (pre),human,splice acceptor
0.7957100868225098,NTv3 650M (post),human,splice acceptor
0.1114460304379463,BPNet arch. 6M,human,start codon
0.3342535495758056,Residual CNN 44M,human,start codon
0.3342535495758056,HyenaDNA 7M,human,start codon
0.3342535495758056,Caduceus 7M,human,start codon
0.5167152881622314,NTv3 8M (pre),human,start codon
0.5340564250946045,NTv3 100M (pre),human,start codon
0.6148532032966614,NTv3 650M (pre),human,start codon
0.6582212448120117,NTv3 650M (post),human,start codon