Commit ·
dd1bdfb
1
Parent(s): 6f62e7a
Initial deploy
Browse files- Dockerfile +12 -0
- README.md +22 -5
- app.py +444 -0
- requirements.txt +5 -0
Dockerfile
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FROM python:3.11-slim
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WORKDIR /app
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COPY requirements.txt .
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RUN pip install --no-cache-dir -r requirements.txt
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COPY . .
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EXPOSE 7860
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CMD ["uvicorn", "app:app", "--host", "0.0.0.0", "--port", "7860"]
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README.md
CHANGED
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@@ -1,12 +1,29 @@
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---
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title:
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emoji:
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colorFrom:
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colorTo:
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sdk: docker
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pinned: false
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license: mit
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short_description: Paper circle offline database
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---
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-
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---
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title: PaperCircle Papers API
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emoji: 📄
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colorFrom: blue
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colorTo: purple
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sdk: docker
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app_port: 7860
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pinned: false
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license: mit
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short_description: Paper circle offline database
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---
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# PaperCircle Papers API
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FastAPI service serving conference papers from a Parquet dataset via DuckDB.
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Provides full-text search and filtered browsing for 230K+ academic papers.
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## Environment Variables
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- `HF_DATASET_REPO`: HuggingFace dataset repo ID (default: `ItsMaxNorm/pc-database`)
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- `PARQUET_PATH`: Local path to papers.parquet (alternative to HF download)
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## Endpoints
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- `GET /health` — Health check
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- `GET /api/community/papers` — Paginated papers with filters
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- `GET /api/community/papers/{paper_id}` — Single paper
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- `GET /api/community/filters` — Filter options
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- `GET /api/search?query=...` — Full-text search
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app.py
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"""
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PaperCircle Papers API — HuggingFace Spaces
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=============================================
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Lightweight FastAPI serving conference papers from a Parquet dataset via DuckDB.
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Deployed on HuggingFace Spaces (free tier).
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"""
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import os
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import json
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import time
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from contextlib import asynccontextmanager
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from typing import Optional, List
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import duckdb
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from fastapi import FastAPI, Query, HTTPException
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from fastapi.middleware.cors import CORSMiddleware
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from huggingface_hub import hf_hub_download
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# =============================================================================
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# Configuration
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| 21 |
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# =============================================================================
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HF_DATASET_REPO = os.getenv("HF_DATASET_REPO", "ItsMaxNorm/pc-database")
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PARQUET_PATH = os.getenv("PARQUET_PATH", "")
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# =============================================================================
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# Database
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# =============================================================================
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db: Optional[duckdb.DuckDBPyConnection] = None
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ready = False
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def init_database():
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"""Load Parquet into DuckDB and create FTS index."""
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global db, ready
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start = time.time()
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db = duckdb.connect(":memory:")
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# Find the parquet file
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parquet_file = None
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# Option 1: Local parquet file
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if PARQUET_PATH and os.path.exists(PARQUET_PATH):
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parquet_file = PARQUET_PATH
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print(f"[DB] Using local Parquet: {parquet_file}")
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# Option 2: Download from HF Hub
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elif HF_DATASET_REPO:
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print(f"[DB] Downloading dataset from HF Hub: {HF_DATASET_REPO}")
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parquet_file = hf_hub_download(
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repo_id=HF_DATASET_REPO,
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filename="data/papers.parquet",
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repo_type="dataset",
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)
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print(f"[DB] Downloaded to: {parquet_file}")
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# Option 3: Look in local data/ directory
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else:
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local_path = os.path.join(os.path.dirname(__file__), "data", "papers.parquet")
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if os.path.exists(local_path):
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parquet_file = local_path
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print(f"[DB] Using bundled Parquet: {parquet_file}")
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if not parquet_file:
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raise RuntimeError(
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| 68 |
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"No Parquet file found. Set HF_DATASET_REPO or PARQUET_PATH env var, "
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| 69 |
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"or place data/papers.parquet in the app directory."
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| 70 |
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)
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| 71 |
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| 72 |
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# Load into DuckDB
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| 73 |
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db.execute(f"""
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| 74 |
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CREATE TABLE papers AS
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| 75 |
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SELECT * FROM read_parquet('{parquet_file}')
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""")
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| 77 |
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| 78 |
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row_count = db.execute("SELECT COUNT(*) FROM papers").fetchone()[0]
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print(f"[DB] Loaded {row_count} papers in {time.time() - start:.1f}s")
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| 80 |
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# Install and load FTS extension
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| 82 |
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db.execute("INSTALL fts")
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| 83 |
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db.execute("LOAD fts")
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| 84 |
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# Create FTS index on title, abstract, tldr
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| 86 |
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db.execute("""
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| 87 |
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PRAGMA create_fts_index(
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| 88 |
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'papers', 'paper_id',
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| 89 |
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'title', 'abstract', 'tldr',
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| 90 |
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overwrite=1
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| 91 |
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)
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| 92 |
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""")
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| 93 |
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print(f"[DB] FTS index created in {time.time() - start:.1f}s total")
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| 94 |
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| 95 |
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ready = True
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| 96 |
+
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| 97 |
+
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| 98 |
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# =============================================================================
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| 99 |
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# App
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| 100 |
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# =============================================================================
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| 101 |
+
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| 102 |
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@asynccontextmanager
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| 103 |
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async def lifespan(app: FastAPI):
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| 104 |
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init_database()
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| 105 |
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yield
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| 106 |
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if db:
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| 107 |
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db.close()
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| 108 |
+
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| 109 |
+
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| 110 |
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app = FastAPI(
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| 111 |
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title="PaperCircle Papers API",
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| 112 |
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version="1.0.0",
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| 113 |
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lifespan=lifespan,
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| 114 |
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)
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| 115 |
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| 116 |
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app.add_middleware(
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| 117 |
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CORSMiddleware,
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| 118 |
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allow_origins=["*"],
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| 119 |
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allow_credentials=True,
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| 120 |
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allow_methods=["*"],
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| 121 |
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allow_headers=["*"],
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| 122 |
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)
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| 123 |
+
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| 124 |
+
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| 125 |
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# =============================================================================
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| 126 |
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# Endpoints
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| 127 |
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# =============================================================================
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| 128 |
+
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| 129 |
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@app.get("/health")
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| 130 |
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async def health():
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| 131 |
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return {"status": "healthy" if ready else "loading", "ready": ready}
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| 132 |
+
|
| 133 |
+
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| 134 |
+
@app.get("/api/community/papers")
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| 135 |
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async def get_community_papers(
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| 136 |
+
page: int = Query(1, ge=1),
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| 137 |
+
limit: int = Query(20, ge=1, le=100),
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| 138 |
+
year: Optional[int] = None,
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| 139 |
+
conference: Optional[str] = None,
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| 140 |
+
source: Optional[str] = None,
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| 141 |
+
track: Optional[str] = None,
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| 142 |
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status: Optional[str] = None,
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| 143 |
+
primary_area: Optional[str] = None,
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| 144 |
+
min_rating: Optional[float] = None,
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| 145 |
+
keywords: Optional[str] = None,
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| 146 |
+
sort_by: str = Query("year", regex="^(year|rating|combined_score|recency|title)$"),
|
| 147 |
+
):
|
| 148 |
+
"""Get paginated community papers with filters."""
|
| 149 |
+
if not ready:
|
| 150 |
+
raise HTTPException(status_code=503, detail="Database loading, please retry")
|
| 151 |
+
|
| 152 |
+
offset = (page - 1) * limit
|
| 153 |
+
|
| 154 |
+
where_clauses = []
|
| 155 |
+
params = []
|
| 156 |
+
|
| 157 |
+
if year is not None:
|
| 158 |
+
where_clauses.append("year = ?")
|
| 159 |
+
params.append(year)
|
| 160 |
+
if conference:
|
| 161 |
+
where_clauses.append("conference = ?")
|
| 162 |
+
params.append(conference)
|
| 163 |
+
if source:
|
| 164 |
+
where_clauses.append("source = ?")
|
| 165 |
+
params.append(source)
|
| 166 |
+
if track:
|
| 167 |
+
where_clauses.append("track = ?")
|
| 168 |
+
params.append(track)
|
| 169 |
+
if status:
|
| 170 |
+
where_clauses.append("paper_status = ?")
|
| 171 |
+
params.append(status)
|
| 172 |
+
if primary_area:
|
| 173 |
+
where_clauses.append("primary_area = ?")
|
| 174 |
+
params.append(primary_area)
|
| 175 |
+
if min_rating is not None:
|
| 176 |
+
where_clauses.append("rating_avg >= ?")
|
| 177 |
+
params.append(min_rating)
|
| 178 |
+
if keywords:
|
| 179 |
+
# Simple ILIKE search for keyword filtering
|
| 180 |
+
where_clauses.append("(title ILIKE ? OR abstract ILIKE ? OR keywords ILIKE ?)")
|
| 181 |
+
pattern = f"%{keywords}%"
|
| 182 |
+
params.extend([pattern, pattern, pattern])
|
| 183 |
+
|
| 184 |
+
where_sql = " AND ".join(where_clauses) if where_clauses else "1=1"
|
| 185 |
+
|
| 186 |
+
# Sort mapping
|
| 187 |
+
sort_map = {
|
| 188 |
+
"year": "year DESC NULLS LAST",
|
| 189 |
+
"rating": "rating_avg DESC NULLS LAST",
|
| 190 |
+
"recency": "year DESC NULLS LAST",
|
| 191 |
+
"title": "title ASC",
|
| 192 |
+
"combined_score": "rating_avg DESC NULLS LAST",
|
| 193 |
+
}
|
| 194 |
+
order_sql = sort_map.get(sort_by, "year DESC NULLS LAST")
|
| 195 |
+
|
| 196 |
+
# Get total count
|
| 197 |
+
count_result = db.execute(
|
| 198 |
+
f"SELECT COUNT(*) FROM papers WHERE {where_sql}", params
|
| 199 |
+
).fetchone()
|
| 200 |
+
total = count_result[0]
|
| 201 |
+
|
| 202 |
+
# Get papers
|
| 203 |
+
rows = db.execute(
|
| 204 |
+
f"""
|
| 205 |
+
SELECT paper_id, title, authors, abstract, year, venue, conference,
|
| 206 |
+
source, track, paper_status, primary_area, keywords, tldr,
|
| 207 |
+
pdf_url, arxiv_id, rating_avg, github_url
|
| 208 |
+
FROM papers
|
| 209 |
+
WHERE {where_sql}
|
| 210 |
+
ORDER BY {order_sql}
|
| 211 |
+
LIMIT ? OFFSET ?
|
| 212 |
+
""",
|
| 213 |
+
params + [limit, offset],
|
| 214 |
+
).fetchall()
|
| 215 |
+
|
| 216 |
+
columns = [
|
| 217 |
+
"paper_id", "title", "authors", "abstract", "year", "venue", "conference",
|
| 218 |
+
"source", "track", "paper_status", "primary_area", "keywords", "tldr",
|
| 219 |
+
"pdf_url", "arxiv_id", "rating_avg", "github_url",
|
| 220 |
+
]
|
| 221 |
+
|
| 222 |
+
papers = []
|
| 223 |
+
for row in rows:
|
| 224 |
+
paper = dict(zip(columns, row))
|
| 225 |
+
# Parse JSON strings back to lists
|
| 226 |
+
paper["authors"] = json.loads(paper["authors"]) if paper["authors"] else []
|
| 227 |
+
paper["keywords"] = json.loads(paper["keywords"]) if paper["keywords"] else []
|
| 228 |
+
papers.append(paper)
|
| 229 |
+
|
| 230 |
+
total_pages = (total + limit - 1) // limit if total > 0 else 1
|
| 231 |
+
|
| 232 |
+
return {
|
| 233 |
+
"papers": papers,
|
| 234 |
+
"total": total,
|
| 235 |
+
"page": page,
|
| 236 |
+
"limit": limit,
|
| 237 |
+
"total_pages": total_pages,
|
| 238 |
+
}
|
| 239 |
+
|
| 240 |
+
|
| 241 |
+
@app.get("/api/community/papers/{paper_id}")
|
| 242 |
+
async def get_community_paper(paper_id: str):
|
| 243 |
+
"""Get a single paper by paper_id."""
|
| 244 |
+
if not ready:
|
| 245 |
+
raise HTTPException(status_code=503, detail="Database loading")
|
| 246 |
+
|
| 247 |
+
row = db.execute(
|
| 248 |
+
"""
|
| 249 |
+
SELECT paper_id, title, authors, abstract, year, venue, conference,
|
| 250 |
+
source, track, paper_status, primary_area, keywords, tldr,
|
| 251 |
+
pdf_url, arxiv_id, rating_avg, github_url, bibtex
|
| 252 |
+
FROM papers WHERE paper_id = ?
|
| 253 |
+
""",
|
| 254 |
+
[paper_id],
|
| 255 |
+
).fetchone()
|
| 256 |
+
|
| 257 |
+
if not row:
|
| 258 |
+
raise HTTPException(status_code=404, detail="Paper not found")
|
| 259 |
+
|
| 260 |
+
columns = [
|
| 261 |
+
"paper_id", "title", "authors", "abstract", "year", "venue", "conference",
|
| 262 |
+
"source", "track", "paper_status", "primary_area", "keywords", "tldr",
|
| 263 |
+
"pdf_url", "arxiv_id", "rating_avg", "github_url", "bibtex",
|
| 264 |
+
]
|
| 265 |
+
paper = dict(zip(columns, row))
|
| 266 |
+
paper["authors"] = json.loads(paper["authors"]) if paper["authors"] else []
|
| 267 |
+
paper["keywords"] = json.loads(paper["keywords"]) if paper["keywords"] else []
|
| 268 |
+
return paper
|
| 269 |
+
|
| 270 |
+
|
| 271 |
+
@app.get("/api/community/filters")
|
| 272 |
+
async def get_filter_options():
|
| 273 |
+
"""Get available filter options."""
|
| 274 |
+
if not ready:
|
| 275 |
+
raise HTTPException(status_code=503, detail="Database loading")
|
| 276 |
+
|
| 277 |
+
years = [r[0] for r in db.execute(
|
| 278 |
+
"SELECT DISTINCT year FROM papers WHERE year IS NOT NULL ORDER BY year DESC"
|
| 279 |
+
).fetchall()]
|
| 280 |
+
|
| 281 |
+
conferences = [r[0] for r in db.execute(
|
| 282 |
+
"SELECT DISTINCT conference FROM papers WHERE conference IS NOT NULL AND conference != '' ORDER BY conference"
|
| 283 |
+
).fetchall()]
|
| 284 |
+
|
| 285 |
+
sources = [r[0] for r in db.execute(
|
| 286 |
+
"SELECT DISTINCT source FROM papers WHERE source IS NOT NULL AND source != '' ORDER BY source"
|
| 287 |
+
).fetchall()]
|
| 288 |
+
|
| 289 |
+
tracks = [r[0] for r in db.execute(
|
| 290 |
+
"SELECT DISTINCT track FROM papers WHERE track IS NOT NULL AND track != '' ORDER BY track"
|
| 291 |
+
).fetchall()]
|
| 292 |
+
|
| 293 |
+
statuses = [r[0] for r in db.execute(
|
| 294 |
+
"SELECT DISTINCT paper_status FROM papers WHERE paper_status IS NOT NULL AND paper_status != '' ORDER BY paper_status"
|
| 295 |
+
).fetchall()]
|
| 296 |
+
|
| 297 |
+
primary_areas = [r[0] for r in db.execute(
|
| 298 |
+
"SELECT DISTINCT primary_area FROM papers WHERE primary_area IS NOT NULL AND primary_area != '' ORDER BY primary_area"
|
| 299 |
+
).fetchall()]
|
| 300 |
+
|
| 301 |
+
return {
|
| 302 |
+
"years": years,
|
| 303 |
+
"conferences": conferences,
|
| 304 |
+
"sources": sources,
|
| 305 |
+
"tracks": tracks,
|
| 306 |
+
"statuses": statuses,
|
| 307 |
+
"primary_areas": primary_areas,
|
| 308 |
+
}
|
| 309 |
+
|
| 310 |
+
|
| 311 |
+
@app.get("/api/search")
|
| 312 |
+
async def search_papers(
|
| 313 |
+
query: str = Query(..., min_length=1),
|
| 314 |
+
conferences: Optional[str] = None,
|
| 315 |
+
start_year: Optional[int] = None,
|
| 316 |
+
end_year: Optional[int] = None,
|
| 317 |
+
limit: int = Query(50, ge=1, le=200),
|
| 318 |
+
offset: int = Query(0, ge=0),
|
| 319 |
+
):
|
| 320 |
+
"""Full-text search with optional filters. conferences is comma-separated."""
|
| 321 |
+
if not ready:
|
| 322 |
+
raise HTTPException(status_code=503, detail="Database loading")
|
| 323 |
+
|
| 324 |
+
conf_list = [c.strip() for c in conferences.split(",")] if conferences else None
|
| 325 |
+
|
| 326 |
+
# Try FTS first
|
| 327 |
+
try:
|
| 328 |
+
papers = _search_fts(query, conf_list, start_year, end_year, limit, offset)
|
| 329 |
+
if papers:
|
| 330 |
+
return {"papers": papers, "search_type": "fts", "count": len(papers)}
|
| 331 |
+
except Exception as e:
|
| 332 |
+
print(f"[Search] FTS failed: {e}, falling back to simple search")
|
| 333 |
+
|
| 334 |
+
# Fallback to simple ILIKE search
|
| 335 |
+
papers = _search_simple(query, conf_list, start_year, end_year, limit, offset)
|
| 336 |
+
return {"papers": papers, "search_type": "simple", "count": len(papers)}
|
| 337 |
+
|
| 338 |
+
|
| 339 |
+
def _search_fts(query, conferences, start_year, end_year, limit, offset):
|
| 340 |
+
"""Full-text search using DuckDB FTS extension."""
|
| 341 |
+
where_clauses = []
|
| 342 |
+
params = []
|
| 343 |
+
|
| 344 |
+
if conferences:
|
| 345 |
+
placeholders = ",".join(["?" for _ in conferences])
|
| 346 |
+
where_clauses.append(f"p.conference IN ({placeholders})")
|
| 347 |
+
params.extend(conferences)
|
| 348 |
+
if start_year is not None:
|
| 349 |
+
where_clauses.append("p.year >= ?")
|
| 350 |
+
params.append(start_year)
|
| 351 |
+
if end_year is not None:
|
| 352 |
+
where_clauses.append("p.year <= ?")
|
| 353 |
+
params.append(end_year)
|
| 354 |
+
|
| 355 |
+
extra_where = (" AND " + " AND ".join(where_clauses)) if where_clauses else ""
|
| 356 |
+
|
| 357 |
+
rows = db.execute(
|
| 358 |
+
f"""
|
| 359 |
+
SELECT p.paper_id, p.title, p.authors, p.abstract, p.year, p.venue,
|
| 360 |
+
p.conference, p.arxiv_id, p.pdf_url, p.rating_avg, p.keywords,
|
| 361 |
+
p.tldr, p.primary_area,
|
| 362 |
+
fts_main_papers.match_bm25(paper_id, ?) AS score
|
| 363 |
+
FROM papers p
|
| 364 |
+
WHERE score IS NOT NULL {extra_where}
|
| 365 |
+
ORDER BY score DESC
|
| 366 |
+
LIMIT ? OFFSET ?
|
| 367 |
+
""",
|
| 368 |
+
[query] + params + [limit, offset],
|
| 369 |
+
).fetchall()
|
| 370 |
+
|
| 371 |
+
columns = [
|
| 372 |
+
"paper_id", "title", "authors", "abstract", "year", "venue",
|
| 373 |
+
"conference", "arxiv_id", "pdf_url", "rating_avg", "keywords",
|
| 374 |
+
"tldr", "primary_area", "score",
|
| 375 |
+
]
|
| 376 |
+
|
| 377 |
+
papers = []
|
| 378 |
+
for row in rows:
|
| 379 |
+
paper = dict(zip(columns, row))
|
| 380 |
+
paper["authors"] = json.loads(paper["authors"]) if paper["authors"] else []
|
| 381 |
+
paper["keywords"] = json.loads(paper["keywords"]) if paper["keywords"] else []
|
| 382 |
+
papers.append(paper)
|
| 383 |
+
|
| 384 |
+
return papers
|
| 385 |
+
|
| 386 |
+
|
| 387 |
+
def _search_simple(query, conferences, start_year, end_year, limit, offset):
|
| 388 |
+
"""Fallback ILIKE-based search."""
|
| 389 |
+
where_clauses = ["(p.title ILIKE ? OR p.abstract ILIKE ? OR p.tldr ILIKE ?)"]
|
| 390 |
+
pattern = f"%{query}%"
|
| 391 |
+
params = [pattern, pattern, pattern]
|
| 392 |
+
|
| 393 |
+
if conferences:
|
| 394 |
+
placeholders = ",".join(["?" for _ in conferences])
|
| 395 |
+
where_clauses.append(f"p.conference IN ({placeholders})")
|
| 396 |
+
params.extend(conferences)
|
| 397 |
+
if start_year is not None:
|
| 398 |
+
where_clauses.append("p.year >= ?")
|
| 399 |
+
params.append(start_year)
|
| 400 |
+
if end_year is not None:
|
| 401 |
+
where_clauses.append("p.year <= ?")
|
| 402 |
+
params.append(end_year)
|
| 403 |
+
|
| 404 |
+
where_sql = " AND ".join(where_clauses)
|
| 405 |
+
|
| 406 |
+
rows = db.execute(
|
| 407 |
+
f"""
|
| 408 |
+
SELECT p.paper_id, p.title, p.authors, p.abstract, p.year, p.venue,
|
| 409 |
+
p.conference, p.arxiv_id, p.pdf_url, p.rating_avg, p.keywords,
|
| 410 |
+
p.tldr, p.primary_area
|
| 411 |
+
FROM papers p
|
| 412 |
+
WHERE {where_sql}
|
| 413 |
+
ORDER BY
|
| 414 |
+
CASE WHEN p.title ILIKE ? THEN 0 ELSE 1 END,
|
| 415 |
+
p.rating_avg DESC NULLS LAST,
|
| 416 |
+
p.year DESC NULLS LAST
|
| 417 |
+
LIMIT ? OFFSET ?
|
| 418 |
+
""",
|
| 419 |
+
params + [pattern, limit, offset],
|
| 420 |
+
).fetchall()
|
| 421 |
+
|
| 422 |
+
columns = [
|
| 423 |
+
"paper_id", "title", "authors", "abstract", "year", "venue",
|
| 424 |
+
"conference", "arxiv_id", "pdf_url", "rating_avg", "keywords",
|
| 425 |
+
"tldr", "primary_area",
|
| 426 |
+
]
|
| 427 |
+
|
| 428 |
+
papers = []
|
| 429 |
+
for row in rows:
|
| 430 |
+
paper = dict(zip(columns, row))
|
| 431 |
+
paper["authors"] = json.loads(paper["authors"]) if paper["authors"] else []
|
| 432 |
+
paper["keywords"] = json.loads(paper["keywords"]) if paper["keywords"] else []
|
| 433 |
+
papers.append(paper)
|
| 434 |
+
|
| 435 |
+
return papers
|
| 436 |
+
|
| 437 |
+
|
| 438 |
+
# =============================================================================
|
| 439 |
+
# Main
|
| 440 |
+
# =============================================================================
|
| 441 |
+
|
| 442 |
+
if __name__ == "__main__":
|
| 443 |
+
import uvicorn
|
| 444 |
+
uvicorn.run(app, host="0.0.0.0", port=7860)
|
requirements.txt
ADDED
|
@@ -0,0 +1,5 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
fastapi==0.115.0
|
| 2 |
+
uvicorn[standard]==0.30.0
|
| 3 |
+
duckdb==1.1.0
|
| 4 |
+
huggingface_hub>=0.23.0
|
| 5 |
+
pyarrow>=15.0.0
|