Jonas Leeb
commited on
Commit
·
a7b2b6d
1
Parent(s):
66113e1
multiple deivces shouldnt interfer as much
Browse files
app.py
CHANGED
|
@@ -28,7 +28,7 @@ class ArxivSearch:
|
|
| 28 |
|
| 29 |
# model selection
|
| 30 |
self.embedding_dropdown = gr.Dropdown(
|
| 31 |
-
choices=["tfidf", "word2vec", "bert", "
|
| 32 |
value="bert",
|
| 33 |
label="Model"
|
| 34 |
)
|
|
@@ -56,9 +56,14 @@ class ArxivSearch:
|
|
| 56 |
inputs=[self.query_box, self.embedding_dropdown],
|
| 57 |
outputs=self.output_md
|
| 58 |
)
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 59 |
self.embedding_dropdown.change(
|
| 60 |
-
self.
|
| 61 |
-
inputs=[self.embedding_dropdown],
|
| 62 |
outputs=self.output_md
|
| 63 |
)
|
| 64 |
self.plot_button.click(
|
|
@@ -73,12 +78,12 @@ class ArxivSearch:
|
|
| 73 |
)
|
| 74 |
|
| 75 |
self.load_data(dataset)
|
| 76 |
-
self.load_model(embedding)
|
| 77 |
-
|
| 78 |
-
|
| 79 |
-
|
| 80 |
# self.load_model('scibert')
|
| 81 |
-
|
| 82 |
|
| 83 |
self.iface.launch()
|
| 84 |
|
|
@@ -139,8 +144,8 @@ class ArxivSearch:
|
|
| 139 |
reduced_data, reduced_results_points, query_point = self.plot_dense(self.bert_embeddings, pca, results_indices)
|
| 140 |
elif self.embedding == "sbert":
|
| 141 |
reduced_data, reduced_results_points, query_point = self.plot_dense(self.sbert_embedding, pca, results_indices)
|
| 142 |
-
elif self.embedding == "scibert":
|
| 143 |
-
|
| 144 |
else:
|
| 145 |
raise ValueError(f"Unsupported embedding type: {self.embedding}")
|
| 146 |
trace = go.Scatter3d(
|
|
@@ -241,17 +246,17 @@ class ArxivSearch:
|
|
| 241 |
print(f"sim, top_indices: {sims}, {top_indices}")
|
| 242 |
return [(i, sims[i]) for i in top_indices]
|
| 243 |
|
| 244 |
-
def scibert_search(self, query, top_n=10):
|
| 245 |
-
|
| 246 |
-
|
| 247 |
-
|
| 248 |
-
|
| 249 |
|
| 250 |
-
|
| 251 |
-
|
| 252 |
-
|
| 253 |
-
|
| 254 |
-
|
| 255 |
|
| 256 |
def sbert_search(self, query, top_n=10):
|
| 257 |
query_vec = self.sbert_model.encode([query])
|
|
@@ -312,11 +317,11 @@ class ArxivSearch:
|
|
| 312 |
self.tokenizer = BertTokenizer.from_pretrained('bert-base-uncased')
|
| 313 |
self.model = BertModel.from_pretrained('bert-base-uncased')
|
| 314 |
self.model.eval()
|
| 315 |
-
elif self.embedding == "scibert":
|
| 316 |
-
|
| 317 |
-
|
| 318 |
-
|
| 319 |
-
|
| 320 |
elif self.embedding == "sbert":
|
| 321 |
self.sbert_model = SentenceTransformer("all-MiniLM-L6-v2")
|
| 322 |
self.sbert_embedding = np.load("BERT embeddings/sbert_embedding.npz")["sbert_embedding"]
|
|
|
|
| 28 |
|
| 29 |
# model selection
|
| 30 |
self.embedding_dropdown = gr.Dropdown(
|
| 31 |
+
choices=["tfidf", "word2vec", "bert", "sbert"],
|
| 32 |
value="bert",
|
| 33 |
label="Model"
|
| 34 |
)
|
|
|
|
| 56 |
inputs=[self.query_box, self.embedding_dropdown],
|
| 57 |
outputs=self.output_md
|
| 58 |
)
|
| 59 |
+
# self.embedding_dropdown.change(
|
| 60 |
+
# self.model_switch,
|
| 61 |
+
# inputs=[self.embedding_dropdown],
|
| 62 |
+
# outputs=self.output_md
|
| 63 |
+
# )
|
| 64 |
self.embedding_dropdown.change(
|
| 65 |
+
self.search_function,
|
| 66 |
+
inputs=[self.query_box, self.embedding_dropdown],
|
| 67 |
outputs=self.output_md
|
| 68 |
)
|
| 69 |
self.plot_button.click(
|
|
|
|
| 78 |
)
|
| 79 |
|
| 80 |
self.load_data(dataset)
|
| 81 |
+
# self.load_model(embedding)
|
| 82 |
+
self.load_model('tfidf')
|
| 83 |
+
self.load_model('word2vec')
|
| 84 |
+
self.load_model('bert')
|
| 85 |
# self.load_model('scibert')
|
| 86 |
+
self.load_model('sbert')
|
| 87 |
|
| 88 |
self.iface.launch()
|
| 89 |
|
|
|
|
| 144 |
reduced_data, reduced_results_points, query_point = self.plot_dense(self.bert_embeddings, pca, results_indices)
|
| 145 |
elif self.embedding == "sbert":
|
| 146 |
reduced_data, reduced_results_points, query_point = self.plot_dense(self.sbert_embedding, pca, results_indices)
|
| 147 |
+
# elif self.embedding == "scibert":
|
| 148 |
+
# reduced_data, reduced_results_points, query_point = self.plot_dense(self.scibert_embeddings, pca, results_indices)
|
| 149 |
else:
|
| 150 |
raise ValueError(f"Unsupported embedding type: {self.embedding}")
|
| 151 |
trace = go.Scatter3d(
|
|
|
|
| 246 |
print(f"sim, top_indices: {sims}, {top_indices}")
|
| 247 |
return [(i, sims[i]) for i in top_indices]
|
| 248 |
|
| 249 |
+
# def scibert_search(self, query, top_n=10):
|
| 250 |
+
# with torch.no_grad():
|
| 251 |
+
# inputs = self.sci_tokenizer(query, return_tensors="pt", truncation=True, padding=True, max_length=512)
|
| 252 |
+
# outputs = self.sci_model(**inputs)
|
| 253 |
+
# query_vec = outputs.last_hidden_state[:, 0, :].numpy()
|
| 254 |
|
| 255 |
+
# self.query_encoding = query_vec
|
| 256 |
+
# sims = cosine_similarity(query_vec, self.scibert_embeddings).flatten()
|
| 257 |
+
# top_indices = sims.argsort()[::-1][:top_n]
|
| 258 |
+
# print(f"sim, top_indices: {sims}, {top_indices}")
|
| 259 |
+
# return [(i, sims[i]) for i in top_indices]
|
| 260 |
|
| 261 |
def sbert_search(self, query, top_n=10):
|
| 262 |
query_vec = self.sbert_model.encode([query])
|
|
|
|
| 317 |
self.tokenizer = BertTokenizer.from_pretrained('bert-base-uncased')
|
| 318 |
self.model = BertModel.from_pretrained('bert-base-uncased')
|
| 319 |
self.model.eval()
|
| 320 |
+
# elif self.embedding == "scibert":
|
| 321 |
+
# self.scibert_embeddings = np.load("SciBERT_embeddings/scibert_embedding.npz")["bert_embedding"]
|
| 322 |
+
# self.sci_tokenizer = AutoTokenizer.from_pretrained('allenai/scibert_scivocab_uncased')
|
| 323 |
+
# self.sci_model = AutoModel.from_pretrained('allenai/scibert_scivocab_uncased')
|
| 324 |
+
# self.sci_model.eval()
|
| 325 |
elif self.embedding == "sbert":
|
| 326 |
self.sbert_model = SentenceTransformer("all-MiniLM-L6-v2")
|
| 327 |
self.sbert_embedding = np.load("BERT embeddings/sbert_embedding.npz")["sbert_embedding"]
|