Update src/streamlit_app.py
Browse files- src/streamlit_app.py +345 -37
src/streamlit_app.py
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@@ -1,40 +1,348 @@
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import
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import numpy as np
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import pandas as pd
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import streamlit as st
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Edit `/streamlit_app.py` to customize this app to your heart's desire :heart:.
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If you have any questions, checkout our [documentation](https://docs.streamlit.io) and [community
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forums](https://discuss.streamlit.io).
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In the meantime, below is an example of what you can do with just a few lines of code:
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"""
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num_points = st.slider("Number of points in spiral", 1, 10000, 1100)
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num_turns = st.slider("Number of turns in spiral", 1, 300, 31)
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indices = np.linspace(0, 1, num_points)
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theta = 2 * np.pi * num_turns * indices
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radius = indices
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x = radius * np.cos(theta)
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y = radius * np.sin(theta)
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df = pd.DataFrame({
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"x": x,
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"y": y,
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"idx": indices,
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"rand": np.random.randn(num_points),
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})
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st.altair_chart(alt.Chart(df, height=700, width=700)
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.mark_point(filled=True)
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.encode(
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x=alt.X("x", axis=None),
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y=alt.Y("y", axis=None),
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color=alt.Color("idx", legend=None, scale=alt.Scale()),
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size=alt.Size("rand", legend=None, scale=alt.Scale(range=[1, 150])),
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))
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import io
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from typing import List, Optional, Tuple
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import numpy as np
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import streamlit as st
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import torch
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torch.classes.__path__ = []
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import torch.nn as nn
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from PIL import Image
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from pathlib import Path
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# Fixed class mapping provided by user
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CLASS_TO_LABEL = {
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0: "Adenocarcinoma",
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1: "Large Cell Carcinoma",
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2: "Normal",
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3: "Squamous Cell Carcinoma",
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}
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def _infer_num_classes_from_state(state_dict: dict) -> Optional[int]:
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candidates = [
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"classifier.2.weight",
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"head.fc.weight",
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"fc.weight",
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"classifier.weight",
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]
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for k in candidates:
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if k in state_dict:
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return int(state_dict[k].shape[0])
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# Try to find any linear layer weight at the tail of classifier
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keys = [k for k in state_dict.keys() if k.endswith(".weight")]
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for k in keys:
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if ".classifier" in k or ".head" in k or k.endswith("fc.weight"):
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try:
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return int(state_dict[k].shape[0])
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except Exception:
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pass
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return None
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def _infer_class_names(ckpt: dict, num_classes: int) -> List[str]:
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# Common patterns
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for key in ("classes", "class_names", "labels"):
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if isinstance(ckpt.get(key), (list, tuple)):
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return list(ckpt[key])
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if isinstance(ckpt.get("idx_to_class"), dict):
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# Ensure ordered by index
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mapping = ckpt["idx_to_class"]
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try:
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return [mapping[i] for i in range(len(mapping))]
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except Exception:
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# Fallback arbitrary order
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return list(mapping.values())
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if isinstance(ckpt.get("class_to_idx"), dict):
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inv = sorted(ckpt["class_to_idx"].items(), key=lambda x: x[1])
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return [name for name, _ in inv]
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return [f"Class {i}" for i in range(num_classes)]
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@st.cache_resource(show_spinner=True)
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def load_model(weights_path: str) -> Tuple[nn.Module, List[str]]:
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device = torch.device("cuda" if torch.cuda.is_available() else "cpu")
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ckpt = torch.load(weights_path, map_location=device)
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if isinstance(ckpt, dict):
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state_dict = ckpt.get("state_dict") or ckpt.get("model_state_dict") or ckpt
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else:
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state_dict = ckpt
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# Prefer fixed mapping if provided, otherwise infer
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if CLASS_TO_LABEL:
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num_classes = len(CLASS_TO_LABEL)
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else:
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num_classes = _infer_num_classes_from_state(state_dict) or 2
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model = None
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errors = []
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# Try torchvision ConvNeXt Large first
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try:
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from torchvision.models import convnext_large
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tv_model = convnext_large(weights=None)
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in_features = tv_model.classifier[2].in_features
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tv_model.classifier[2] = nn.Linear(in_features, num_classes)
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tv_model.load_state_dict(state_dict, strict=False)
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model = tv_model
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except Exception as e:
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errors.append(f"torchvision load failed: {e}")
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if model is None:
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raise RuntimeError(
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"Failed to load model with the provided weights. "
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+ " ; ".join(errors)
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)
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model.to(device)
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model.eval()
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if CLASS_TO_LABEL and len(CLASS_TO_LABEL) == num_classes:
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class_names = [CLASS_TO_LABEL[i] for i in range(num_classes)]
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else:
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class_names = _infer_class_names(ckpt if isinstance(ckpt, dict) else {}, num_classes)
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return model, class_names
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def preprocess_image(img: Image.Image) -> torch.Tensor:
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# Ensure RGB
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if img.mode != "RGB":
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img = img.convert("RGB")
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# Resize to 224 while keeping aspect ratio via center-crop like behavior
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img = img.resize((224, 224))
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arr = np.array(img).astype("float32") / 255.0
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mean = np.array([0.485, 0.456, 0.406], dtype=np.float32)
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std = np.array([0.229, 0.224, 0.225], dtype=np.float32)
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arr = (arr - mean) / std
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arr = np.transpose(arr, (2, 0, 1))
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tensor = torch.from_numpy(arr)
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return tensor
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def predict(model: nn.Module, tensor: torch.Tensor) -> Tuple[int, float, np.ndarray]:
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device = next(model.parameters()).device
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with torch.no_grad():
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logits = model(tensor.unsqueeze(0).to(device))
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if isinstance(logits, (list, tuple)):
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logits = logits[0]
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probs = torch.softmax(logits, dim=1).cpu().numpy()[0]
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idx = int(np.argmax(probs))
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conf = float(probs[idx])
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return idx, conf, probs
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st.set_page_config(page_title="CT Scan Classifier", page_icon="🩺", layout="centered")
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# Custom CSS for UI Enhancement
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st.markdown("""
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<style>
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/* Main Background & Fonts */
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h1, h2, h3 {
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font-family: 'Helvetica Neue', sans-serif;
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}
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h1 {
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font-weight: 700;
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color: #0f52ba; /* Medical Blue */
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}
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/* Info Cards Styling */
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div[data-testid="stVerticalBlock"] > div[data-testid="stVerticalBlock"] {
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/* Generic adjustment for nested blocks if needed */
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}
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/* Custom Button for "Start Detecting" (Anchor Link) */
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a.custom-btn {
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display: inline-block;
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padding: 0.6em 1.2em;
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margin-top: 20px;
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color: #ffffff !important;
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background-color: #ff4b4b;
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border-radius: 8px;
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text-decoration: none;
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font-weight: 600;
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text-align: center;
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transition: all 0.2s ease-in-out;
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box-shadow: 0 4px 6px rgba(0,0,0,0.1);
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}
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a.custom-btn:hover {
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background-color: #ff3333;
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transform: translateY(-2px);
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box-shadow: 0 6px 8px rgba(0,0,0,0.15);
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}
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/* Style for the metrics/prediction result */
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div[data-testid="stMetricValue"] {
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font-size: 1.5rem;
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}
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</style>
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""", unsafe_allow_html=True)
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# Resolve static asset directory robustly (works locally and on Streamlit Cloud)
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| 183 |
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APP_DIR = Path(__file__).parent.resolve()
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| 184 |
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_public_candidates = [
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| 185 |
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APP_DIR / "public",
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| 186 |
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Path.cwd() / "public",
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| 187 |
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APP_DIR.parent / "public",
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]
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| 189 |
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PUBLIC_DIR = next((p for p in _public_candidates if p.exists()), _public_candidates[0])
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| 190 |
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# --- HERO SECTION ---
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| 192 |
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st.title("Detect Chest Cancer with CTSense")
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| 193 |
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st.caption("Fast, Accurate, and Effortless!")
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| 194 |
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col1, col2 = st.columns([2, 1])
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| 195 |
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with col1:
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| 196 |
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st.markdown(
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"""
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<div style="font-size: 1.1em; color: #444; line-height: 1.6;">
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Welcome to the future of chest cancer detection. With the power of <b>CTSense</b>,
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you can analyze your <b>CT scans</b> with just one click and receive fast, reliable insights
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powered by advanced AI technology.
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<br><br>
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Start your scan now and experience precision made simple.
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</div>
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""", unsafe_allow_html=True
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)
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# Replaced st.button with an HTML anchor link styled as a button
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st.markdown('<a href="#prediction-section" class="custom-btn">Start Detecting</a>', unsafe_allow_html=True)
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+
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with col2:
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# Prefer local static image if present; fallback to remote URL
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hero_local = PUBLIC_DIR / "1.png"
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st.image(str(hero_local), use_column_width=True, width=500)
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# --- INFO SECTION ---
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st.divider()
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st.header("What You Need to Know About Chest Cancer")
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st.subheader("What Is Chest Cancer?")
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st.write(
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"Chest cancer refers to several types of cancers that form in the tissues of the lungs. "
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"These cancers grow uncontrollably and can interfere with your breathing, oxygen levels, and overall health. "
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"Some types grow slowly, while others spread quickly. Early detection is crucial."
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)
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st.subheader("Main Types of Chest Cancer")
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st.caption("In our system, we detect these categories:")
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# Row 1: Adenocarcinoma | Large Cell Carcinoma
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row1_left, row1_right = st.columns(2)
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with row1_left:
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with st.container(border=True):
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st.subheader("Adenocarcinoma")
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st.write(
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"A common type of lung cancer that starts in the glandular cells. "
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"It often grows in the outer parts of the lungs and is more likely to appear in non-smokers than other types."
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)
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with row1_right:
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with st.container(border=True):
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st.subheader("Large Cell Carcinoma")
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st.write(
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"A more aggressive and large cancer that can appear anywhere in the lungs. "
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"It grows and spreads faster and is usually harder to treat if found late."
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)
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# Row 2: Squamous Cell Carcinoma | Normal
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row2_left, row2_right = st.columns(2)
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with row2_left:
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with st.container(border=True):
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st.subheader("Squamous Cell Carcinoma")
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st.write(
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"This type begins in the thin, flat cells lining the airways. "
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"It often develops in the center of the lungs and is strongly linked to smoking."
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)
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with row2_right:
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with st.container(border=True):
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st.subheader("Normal")
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st.write(
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"No signs of detectable cancer were found based on the uploaded scan. "
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"The AI did not identify any suspicious growths (cancer)."
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)
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st.subheader("What Happens if It’s Left Untreated?")
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st.write(
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"Without treatment, chest cancer can spread to other organs, reduce lung function, "
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"cause severe breathing issues, and become life-threatening. Early diagnosis significantly improves "
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"treatment options and survival rates."
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)
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st.subheader("How Do You Detect It?")
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st.write(
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"Chest cancer often begins with mild or unclear symptoms like coughing, chest pain, or fatigue. "
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"Because these signs can be easily missed, doctors rely on **CT scans** to spot abnormalities."
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)
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st.write(
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"With CTSense AI, you can upload your chest scan and receive a fast, AI-powered analysis that helps identify "
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"the presence of cancer types such as Adenocarcinoma, Large Cell Carcinoma, and Squamous Cell Carcinoma."
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)
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st.divider()
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+
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# --- PREDICTION / CLASSIFIER SECTION ---
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# Add an invisible anchor for the button to scroll to
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st.markdown('<div id="prediction-section"></div>', unsafe_allow_html=True)
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+
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st.title("CT Scan Classifier (ConvNeXt Large)")
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+
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# Sidebar for Model Info & Graphs
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with st.sidebar:
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st.subheader("CTSense")
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st.write("Using weights: `CTScan_ConvNeXtLarge.pth`")
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+
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st.link_button("GitHub Repository", "https://github.com/Jasonnn13/FinalProjectComputerVision")
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+
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st.subheader("Training Curves")
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shown_any = False
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for rel, label in [
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("acc.png", "Accuracy"),
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("loss.png", "Loss"),
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]:
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img_path = PUBLIC_DIR / rel
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st.caption(f"{label} (from {img_path.name})")
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st.image(str(img_path), use_column_width=True)
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shown_any = True
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+
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if not shown_any:
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st.caption("Place images like public/acc.png and public/loss.png to display here.")
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+
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+
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@st.cache_resource(show_spinner=False)
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def _load_once():
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return load_model("CTScan_ConvNeXtLarge.pth")
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+
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+
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try:
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model, class_names = _load_once()
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except Exception as e:
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st.error("Failed to load model. See details below.")
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st.exception(e)
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st.stop()
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+
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+
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uploaded = st.file_uploader(
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"Upload CT image (PNG/JPG)", type=["png", "jpg", "jpeg"], accept_multiple_files=False
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)
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+
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if uploaded is not None:
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image_bytes = uploaded.read()
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img = Image.open(io.BytesIO(image_bytes))
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st.image(img, caption="Uploaded Image", use_column_width=True)
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+
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if st.button("Predict", type="primary"):
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with st.spinner("Running inference..."):
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tensor = preprocess_image(img)
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idx, conf, probs = predict(model, tensor)
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+
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pred_label = class_names[idx] if idx < len(class_names) else f"Class {idx}"
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| 338 |
+
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st.markdown("---")
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st.subheader("Prediction Result")
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| 341 |
+
col_res1, col_res2 = st.columns(2)
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| 342 |
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with col_res1:
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st.success(f"**{pred_label}**")
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+
with col_res2:
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| 345 |
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st.metric("Confidence", f"{conf:.2%}")
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+
else:
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| 348 |
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st.info("Please upload an image to begin.")
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