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Update app.py
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app.py
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@@ -1,34 +1,31 @@
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import streamlit as st
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import requests
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def get_genome_from_uniprot(uniprot_id):
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url = f"https://www.uniprot.org/uniprot/{uniprot_id}.fasta"
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response = requests.get(url)
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if response.status_code == 200:
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return response.text
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else:
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st.error("Failed to retrieve genome. Please check the
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return None
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def main():
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st.title("Download Genome from
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st.write("Enter the
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if st.button("Get Genome"):
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if
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genome_data =
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if genome_data:
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st.text_area("Genome Data", genome_data, height=300)
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st.download_button("Download Genome", genome_data, file_name=f"{
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else:
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st.warning("Please enter
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if __name__ == "__main__":
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main()
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import streamlit as st
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import requests
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def get_genome_from_ncbi(accession_number):
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# Construct the URL for NCBI GenBank
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url = f"https://www.ncbi.nlm.nih.gov/sviewer/viewer.cgi?db=nuccore&id={accession_number}&report=fasta&retmode=text"
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response = requests.get(url)
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if response.status_code == 200:
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return response.text
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else:
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st.error("Failed to retrieve genome. Please check the accession number.")
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return None
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def main():
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st.title("Download Genome from NCBI")
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st.write("Enter the accession number to download the corresponding genome.")
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accession_number = st.text_input("Accession Number")
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if st.button("Get Genome"):
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if accession_number:
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genome_data = get_genome_from_ncbi(accession_number)
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if genome_data:
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st.text_area("Genome Data", genome_data, height=300)
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st.download_button("Download Genome", genome_data, file_name=f"{accession_number}.fasta", mime="text/plain")
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else:
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st.warning("Please enter an accession number.")
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if __name__ == "__main__":
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main()
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