File size: 5,739 Bytes
a8a0987
 
 
 
 
 
4527422
 
 
a8a0987
 
a65c43b
4527422
 
 
0c4f9b9
c6b80e1
a8a0987
4527422
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
49d3f8d
4527422
 
a65c43b
4527422
 
 
a65c43b
4527422
 
 
a65c43b
4527422
 
 
a65c43b
4527422
 
 
 
 
a65c43b
4527422
 
 
 
 
 
 
 
c6b80e1
4527422
c6b80e1
4527422
 
 
 
 
 
 
 
 
 
 
 
a8a0987
 
 
4527422
a8a0987
 
 
 
 
 
4527422
 
 
 
a8a0987
 
4527422
a8a0987
 
4527422
 
a8a0987
 
4527422
a8a0987
 
 
 
4527422
 
 
 
a65c43b
4527422
a65c43b
 
 
 
 
 
 
 
 
4527422
a65c43b
 
 
c6b80e1
4527422
 
c6b80e1
4527422
c6b80e1
a8a0987
a65c43b
4527422
a8a0987
4527422
 
 
 
 
 
 
 
 
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
import torch
import torch.nn as nn
import torch.optim as optim
from torchvision import transforms
from torch.utils.data import Dataset, DataLoader
from PIL import Image
import requests
from io import BytesIO
from pymongo import MongoClient
from sklearn.model_selection import train_test_split
from sklearn.metrics import accuracy_score, f1_score
import segmentation_models_pytorch as smp
from torchvision.models import densenet121
import gradio as gr
import json

device = torch.device("cuda" if torch.cuda.is_available() else "cpu")

client = MongoClient("mongodb+srv://xcovidinsight:FYP25S108@cluster0.vqesy.mongodb.net/")
db = client["covid_system"]
collection = db["validated_xrays"]

class UNet(nn.Module):
    def __init__(self):
        super().__init__()
        self.model = smp.Unet(
            encoder_name="resnet34",
            encoder_weights="imagenet",
            in_channels=1,
            classes=1
        )

    def forward(self, x):
        return self.model(x)

class MyClassifier(nn.Module):
    def __init__(self, num_classes=4):
        super().__init__()
        from torchvision.models import DenseNet121_Weights
        base_model = densenet121(weights=DenseNet121_Weights.IMAGENET1K_V1)
        in_features = base_model.classifier.in_features
        base_model.classifier = nn.Linear(in_features, num_classes)
        self.model = base_model

    def forward(self, x):
        return self.model(x)

def fetch_image(url):
    try:
        response = requests.get(url)
        image = Image.open(BytesIO(response.content)).convert("L").resize((256, 256))
        return image
    except Exception as e:
        print(f"Failed to fetch image from {url}: {e}")
        return None

def trigger_incremental_train():
    samples = list(collection.find())
    samples = [s for s in samples if "image_path" in s and "true_label" in s]

    if not samples or len(samples) < 100:
        return {"error": "Not enough validated samples (minimum 100 required)."}

    m1 = UNet()
    m1.model.load_state_dict(torch.load("Segmentation Model.pth"))
    m1.to(device).eval()

    m2_old = MyClassifier()
    m2_old.load_state_dict(torch.load("Classification Model.pth", map_location=device))
    m2_old.to(device).eval()

    m2 = MyClassifier()
    m2.load_state_dict(torch.load("Classification Model.pth", map_location=device))
    m2.to(device)

    class LungXrayDataset(Dataset):
        def __init__(self, entries, transform):
            self.entries = entries
            self.transform = transform
            self.label_map = {label: i for i, label in enumerate(sorted(set(s["true_label"] for s in entries)))}

        def __len__(self):
            return len(self.entries)

        def __getitem__(self, idx):
            entry = self.entries[idx]
            image = fetch_image(entry["image_path"])
            if image is None:
                raise RuntimeError(f"Image at {entry['image_path']} could not be loaded.")

            image_tensor = transforms.ToTensor()(image).unsqueeze(0).to(device)

            with torch.no_grad():
                mask = m1(image_tensor).sigmoid()
                mask = (mask > 0.5).float()
                masked = image_tensor * mask

            masked_rgb = masked.squeeze(0).repeat(3, 1, 1).cpu()

            if self.transform:
                masked_rgb = self.transform(masked_rgb)

            label = self.label_map[entry["true_label"]]
            return masked_rgb, label

    transform = transforms.Compose([
        transforms.Resize((224, 224)),
        transforms.Normalize(mean=[0.5]*3, std=[0.5]*3)
    ])

    train_entries, val_entries = train_test_split(
        samples, test_size=0.2, stratify=[s["true_label"] for s in samples], random_state=42
    )

    train_ds = LungXrayDataset(train_entries, transform)
    val_ds = LungXrayDataset(val_entries, transform)
    train_loader = DataLoader(train_ds, batch_size=16, shuffle=True)
    val_loader = DataLoader(val_ds, batch_size=16)

    criterion = nn.CrossEntropyLoss()
    optimizer = optim.Adam(m2.parameters(), lr=1e-4)

    for epoch in range(5):
        m2.train()
        total_loss, correct = 0, 0
        for imgs, labels in train_loader:
            imgs, labels = imgs.to(device), labels.to(device)
            out = m2(imgs)
            loss = criterion(out, labels)
            optimizer.zero_grad()
            loss.backward()
            optimizer.step()
            total_loss += loss.item()
            correct += (out.argmax(1) == labels).sum().item()
        acc = correct / len(train_ds)
        print(f"Epoch {epoch+1} ➤ Loss: {total_loss:.4f} | Accuracy: {acc:.4f}")

    def evaluate(model, loader, version):
        model.eval()
        y_true, y_pred = [], []
        with torch.no_grad():
            for imgs, labels in loader:
                imgs = imgs.to(device)
                outputs = model(imgs)
                y_pred.extend(outputs.argmax(1).cpu().numpy())
                y_true.extend(labels.numpy())
        return {
            "version": version,
            "accuracy": round(accuracy_score(y_true, y_pred), 4),
            "f1_macro": round(f1_score(y_true, y_pred, average="macro"), 4),
        }

    eval_old = evaluate(m2_old, val_loader, "Old")
    eval_new = evaluate(m2, val_loader, "New")

    torch.save(m2.state_dict(), "New Classification Model.pth")

    return {
        "old_model": eval_old,
        "new_model": eval_new
    }

with gr.Blocks() as demo:
    with gr.Row():
        train_button = gr.Button("Start Incremental Training")
        output_json = gr.JSON(label="Training Result")

    train_button.click(fn=trigger_incremental_train, inputs=[], outputs=output_json)

demo.launch(server_name="0.0.0.0", server_port=7860)