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Browse files- app (1).py +76 -0
- gradcam.py +60 -0
- requirements (1).txt +5 -0
- vgg_xray_model.pth +3 -0
app (1).py
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import torch
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import torch.nn as nn
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import torchvision.transforms as transforms
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from torchvision.models import vgg16, VGG16_Weights
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from PIL import Image
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import gradio as gr
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import numpy as np
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import cv2
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from gradcam import GradCAM, apply_heatmap
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# Categories for classification
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categories = ["COVID", "Lung_Opacity", "Normal", "Viral Pneumonia"]
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# Load Pretrained VGG16 Model
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print("Loading Model...")
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device = torch.device("cpu")
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vgg_model = vgg16(weights=VGG16_Weights.IMAGENET1K_V1)
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for param in vgg_model.features.parameters():
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param.requires_grad = False
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vgg_model.classifier[6] = nn.Linear(4096, 4)
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vgg_model.load_state_dict(torch.load("vgg_xray_model.pth", map_location=device))
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vgg_model = vgg_model.to(device)
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vgg_model.eval()
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print("Model Loaded Successfully!")
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# Initialize Grad-CAM with the last convolutional layer
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gradcam = GradCAM(vgg_model, vgg_model.features[-1])
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# Image Preprocessing
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transform = transforms.Compose([
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transforms.Resize((224, 224)),
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transforms.ToTensor(),
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transforms.Normalize(mean=[0.5, 0.5, 0.5], std=[0.5, 0.5, 0.5])
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])
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# Prediction function with Grad-CAM
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def predict(image):
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# Preprocess image
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image_tensor = transform(image).unsqueeze(0).to(device) # Add batch dimension
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# Perform inference (no gradients)
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with torch.no_grad():
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output = vgg_model(image_tensor)
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_, predicted = torch.max(output, 1)
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prediction = categories[predicted.item()]
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# Enable gradients for Grad-CAM
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image_tensor.requires_grad_()
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heatmap = gradcam.generate_heatmap(image_tensor, predicted.item())
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# Overlay heatmap (handle failures)
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try:
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overlay = apply_heatmap(image, heatmap)
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except:
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overlay = image # Fallback to original image
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return {"prediction": prediction}, overlay
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# Gradio Interface
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print("Initializing Gradio Interface...")
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interface = gr.Interface(
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fn=predict,
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inputs=gr.Image(type="pil"),
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outputs=[
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gr.JSON(label="Diagnosis"), # Explicitly labeled JSON output
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gr.Image(type="pil", label="Grad-CAM Heatmap")
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],
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title="X-Ray Classifier with Grad-CAM",
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allow_flagging="never", # Replace with flagging_mode="never" if using Gradio >=4.0
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live=True
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)
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print("Launching Gradio App...")
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interface.launch(server_name="0.0.0.0", server_port=7860)
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print("Gradio App Running!")
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gradcam.py
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import torch
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import numpy as np
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import cv2
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from PIL import Image
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class GradCAM:
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def __init__(self, model, target_layer):
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self.model = model
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self.target_layer = target_layer
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self.gradients = None
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self.activations = None
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# Use register_full_backward_hook for PyTorch >=1.8
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self.target_layer.register_forward_hook(self.save_activations)
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self.target_layer.register_full_backward_hook(self.save_gradients)
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def save_activations(self, module, input, output):
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self.activations = output
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def save_gradients(self, module, grad_input, grad_output):
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self.gradients = grad_output[0] # grad_output is a tuple
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def generate_heatmap(self, image_tensor, class_index=None):
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# Ensure gradients are enabled
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with torch.set_grad_enabled(True):
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output = self.model(image_tensor) # No unsqueeze needed
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if class_index is None:
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class_index = output.argmax()
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score = output[:, class_index]
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self.model.zero_grad()
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score.backward(retain_graph=True) # Compute gradients
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# Move data to CPU and convert to numpy
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gradients = self.gradients.cpu().numpy()
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activations = self.activations.cpu().numpy()
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# Compute weights and heatmap
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weights = np.mean(gradients, axis=(2, 3)) # Shape: [batch, channels]
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cam = np.sum(weights[:, :, None, None] * activations, axis=1) # Weighted sum
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cam = np.maximum(cam, 0) # ReLU
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cam = cam[0] # Remove batch dimension
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# Normalize heatmap
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cam = (cam - np.min(cam)) / (np.max(cam) - np.min(cam) + 1e-8)
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return cam
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def apply_heatmap(image_pil, heatmap):
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"""Overlay Grad-CAM heatmap on the original image"""
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if heatmap is None: # Fallback if heatmap fails
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return image_pil
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image_cv = np.array(image_pil)
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image_cv = cv2.cvtColor(image_cv, cv2.COLOR_RGB2BGR)
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heatmap = cv2.resize(heatmap, (image_cv.shape[1], image_cv.shape[0]))
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heatmap = np.uint8(255 * heatmap)
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heatmap = cv2.applyColorMap(heatmap, cv2.COLORMAP_JET)
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overlay = cv2.addWeighted(image_cv, 0.5, heatmap, 0.5, 0)
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return Image.fromarray(cv2.cvtColor(overlay, cv2.COLOR_BGR2RGB))
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requirements (1).txt
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torch
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torchvision
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gradio==5.23.3
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opencv-python-headless
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anyio==3.6.2
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vgg_xray_model.pth
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version https://git-lfs.github.com/spec/v1
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oid sha256:492760a84b353e77027e0ddef767d976c240c97acbc41f3e88d6fa0267e85443
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size 537119090
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