Spaces:
Runtime error
Runtime error
Upload 3 files
Browse files- Dockerfile +22 -0
- requirements.txt +5 -0
- src/app.py +159 -0
Dockerfile
ADDED
|
@@ -0,0 +1,22 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
# Use an official Python runtime as a parent image
|
| 2 |
+
FROM python:3.9-slim-buster
|
| 3 |
+
|
| 4 |
+
# Set environment variables for Flask
|
| 5 |
+
ENV FLASK_APP=app.py
|
| 6 |
+
ENV FLASK_RUN_HOST=0.0.0.0
|
| 7 |
+
ENV FLASK_ENV=development
|
| 8 |
+
|
| 9 |
+
# Set the working directory in the container
|
| 10 |
+
WORKDIR /app
|
| 11 |
+
|
| 12 |
+
# Copy the current directory contents into the container at /app
|
| 13 |
+
COPY . /app
|
| 14 |
+
|
| 15 |
+
# Install any needed packages in requirements.txt
|
| 16 |
+
RUN pip install pip install --no-cache-dir --upgrade -r requirements.txt
|
| 17 |
+
|
| 18 |
+
# Make port 7000-8000 available
|
| 19 |
+
EXPOSE 7000-8000
|
| 20 |
+
|
| 21 |
+
# Define the command to run the Flask app
|
| 22 |
+
CMD ["py", "app/app.py"]
|
requirements.txt
ADDED
|
@@ -0,0 +1,5 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
pandas
|
| 2 |
+
Numpy
|
| 3 |
+
sentence-transformers
|
| 4 |
+
elasticsearch
|
| 5 |
+
Flask
|
src/app.py
ADDED
|
@@ -0,0 +1,159 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
from flask import Flask, request, jsonify
|
| 2 |
+
import pandas as pd
|
| 3 |
+
import numpy as np
|
| 4 |
+
from elasticsearch import Elasticsearch
|
| 5 |
+
from scipy.spatial.distance import cosine
|
| 6 |
+
from sentence_transformers import SentenceTransformer
|
| 7 |
+
import logging
|
| 8 |
+
|
| 9 |
+
|
| 10 |
+
#Creat the flask instance Using create_app
|
| 11 |
+
app=Flask(__name__)
|
| 12 |
+
|
| 13 |
+
# Configure logging
|
| 14 |
+
logging.basicConfig(filename='app.log', level=logging.INFO)
|
| 15 |
+
"""
|
| 16 |
+
Functions for request/response validation
|
| 17 |
+
"""
|
| 18 |
+
# Define a function for request validation
|
| 19 |
+
def validate_request(request_data):
|
| 20 |
+
# Example: Validate that 'question' is present in the request
|
| 21 |
+
if 'question' not in request_data:
|
| 22 |
+
return False
|
| 23 |
+
return True
|
| 24 |
+
|
| 25 |
+
# Define a function for response validation
|
| 26 |
+
def validate_response(response_data):
|
| 27 |
+
# Example: Validate that 'message' is present in the response
|
| 28 |
+
if 'message' not in response_data:
|
| 29 |
+
return False
|
| 30 |
+
return True
|
| 31 |
+
|
| 32 |
+
"""
|
| 33 |
+
Function for preparing csv for indexing
|
| 34 |
+
"""
|
| 35 |
+
def prepare_documents(df):
|
| 36 |
+
documents = []
|
| 37 |
+
|
| 38 |
+
for _, row in df.iterrows():
|
| 39 |
+
#row["Embedding"].tolist()
|
| 40 |
+
document = {
|
| 41 |
+
"Passages": row["Passages"],
|
| 42 |
+
"Metadata": row["Metadata"],
|
| 43 |
+
"Embedding": {
|
| 44 |
+
"type": "dense_vector",
|
| 45 |
+
"dims": 3, # Specify the dimensionality of your dense vectors
|
| 46 |
+
"value": row["Embedding"].tolist()
|
| 47 |
+
}}
|
| 48 |
+
documents.append(document)
|
| 49 |
+
return documents
|
| 50 |
+
"""
|
| 51 |
+
function for working with retrival responses
|
| 52 |
+
"""
|
| 53 |
+
# Extract relevant passages, metadata, and scores
|
| 54 |
+
def Extraction(response,question_embedding):
|
| 55 |
+
relevant_passages = []
|
| 56 |
+
for hit in response["hits"]["hits"]:
|
| 57 |
+
passage = hit["_source"]["Passages"]
|
| 58 |
+
metadata = hit["_source"]["Metadata"]
|
| 59 |
+
#score_1=hit['_score']
|
| 60 |
+
passage_embedding = np.array(hit["_source"]["Embedding"]['value'])
|
| 61 |
+
score = 1 - cosine(question_embedding, passage_embedding) # Calculate cosine similarity
|
| 62 |
+
relevant_passages.append({"passage": passage, "metadata": metadata, "score": score})
|
| 63 |
+
|
| 64 |
+
#Sort the relevant passages by score in descending order
|
| 65 |
+
relevant_passages.sort(key=lambda x: x["score"], reverse=True)
|
| 66 |
+
#Get the top 3 relevant passages and their metadata
|
| 67 |
+
top_3_relevant_passages = relevant_passages[:3]
|
| 68 |
+
return top_3_relevant_passages
|
| 69 |
+
|
| 70 |
+
#create the elastic search instance
|
| 71 |
+
es = Elasticsearch(
|
| 72 |
+
"https://92d997736474439dae5ccfaedc2ad990.us-central1.gcp.cloud.es.io:443",
|
| 73 |
+
api_key="Ym16RzI0b0JIcXpRTU9NQUNUNE46YnBmaUtCWHdTNXlnN1dZR2w4Rllqdw=="
|
| 74 |
+
)
|
| 75 |
+
app.logger.info(msg='es instance created')
|
| 76 |
+
"""
|
| 77 |
+
Question asking endpoint
|
| 78 |
+
|
| 79 |
+
"""
|
| 80 |
+
# Define an endpoint for receiving a user question via POST request
|
| 81 |
+
@app.route('/ask', methods=['POST'])
|
| 82 |
+
def receive_question():
|
| 83 |
+
model = SentenceTransformer('sentence-transformers/multi-qa-distilbert-cos-v1')
|
| 84 |
+
# Get the question from the request JSON data
|
| 85 |
+
question_data = request.get_json()
|
| 86 |
+
user_question = question_data.get('question')
|
| 87 |
+
|
| 88 |
+
# Validate request data
|
| 89 |
+
if not validate_request(question_data):
|
| 90 |
+
app.logger.error(msg='Invalid request data')
|
| 91 |
+
return jsonify({'error': 'Invalid request data'}), 400
|
| 92 |
+
|
| 93 |
+
#return response
|
| 94 |
+
question = user_question
|
| 95 |
+
question_embedding = model.encode(question)
|
| 96 |
+
question_embedding=question_embedding.tolist()
|
| 97 |
+
#index name created on elasticsearch
|
| 98 |
+
index_name="search-passagemetadataemb"
|
| 99 |
+
#search
|
| 100 |
+
response = es.search(
|
| 101 |
+
index=index_name,
|
| 102 |
+
q=question,
|
| 103 |
+
size=3
|
| 104 |
+
)
|
| 105 |
+
top_3=Extraction(response=response,question_embedding=question_embedding)
|
| 106 |
+
results={}
|
| 107 |
+
id=0 # id for different passages
|
| 108 |
+
for passage_info in top_3:
|
| 109 |
+
results[f"Passage {id}:"]=passage_info["passage"]
|
| 110 |
+
results[f"Metadata {id}:"]= passage_info["metadata"]
|
| 111 |
+
results[f"Score {id}:"]= passage_info["score"]
|
| 112 |
+
id=id+1
|
| 113 |
+
|
| 114 |
+
# Respond with a confirmation message
|
| 115 |
+
response = {'message': 'Question received successfully',
|
| 116 |
+
'qustion': user_question,
|
| 117 |
+
'results': results
|
| 118 |
+
}
|
| 119 |
+
# Validate request data
|
| 120 |
+
if not validate_response(response):
|
| 121 |
+
return jsonify({'error': 'Invalid response data'}), 500
|
| 122 |
+
return jsonify(response)
|
| 123 |
+
|
| 124 |
+
|
| 125 |
+
"""
|
| 126 |
+
File Upload endpoint
|
| 127 |
+
"""
|
| 128 |
+
@app.route('/upload_csv', methods=['POST'])
|
| 129 |
+
def upload_document():
|
| 130 |
+
# Get the uploaded file from the request
|
| 131 |
+
uploaded_file = request.files['file']
|
| 132 |
+
|
| 133 |
+
if uploaded_file:
|
| 134 |
+
app.logger.info(msg='file uploaded')
|
| 135 |
+
# Process the uploaded file
|
| 136 |
+
# Here, we save it with a unique name
|
| 137 |
+
file_path = 'uploads/' + uploaded_file.filename
|
| 138 |
+
uploaded_file.save(file_path)
|
| 139 |
+
df=pd.read_csv(file_path)
|
| 140 |
+
|
| 141 |
+
#Convert embeddings to np array
|
| 142 |
+
df['Embedding'] = df['Embedding'].apply(lambda x: np.fromstring(x.replace('\n', '')[1:-1], sep=' '))
|
| 143 |
+
# Index the document in Elasticsearch
|
| 144 |
+
documents=prepare_documents(df)
|
| 145 |
+
|
| 146 |
+
|
| 147 |
+
# Create a function to prepare documents for indexing
|
| 148 |
+
index_name = "search-passagemetadataemb" #index name created on elasticsearch
|
| 149 |
+
#index
|
| 150 |
+
for doc_id, document in enumerate(documents):
|
| 151 |
+
es.index(index=index_name, body=document, id=doc_id)
|
| 152 |
+
|
| 153 |
+
|
| 154 |
+
return jsonify({'message': 'Document uploaded and indexed successfully'})
|
| 155 |
+
|
| 156 |
+
return jsonify({'message': 'No file uploaded'})
|
| 157 |
+
|
| 158 |
+
if __name__=='__main__':
|
| 159 |
+
app.run(debug=True)
|