Update chatbot.py
Browse files- chatbot.py +4 -15
chatbot.py
CHANGED
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@@ -581,13 +581,8 @@ def rag_query(question: str, top_k: int = 3) -> str:
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def build_chatbot_tab():
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"""Called from app.py to inject the chatbot into Tab A6."""
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# Pre-build index in background
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status_msg = "Initializing RAG index..."
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ok, build_msg = _build_index()
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status_msg = build_msg if ok else f"⚠️ {build_msg}"
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gr.Markdown(
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"Ask questions about LNP delivery, protein corona, cancer variants, or liquid biopsy. "
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"Answers are grounded in 20 indexed papers — never fabricated."
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)
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@@ -621,19 +616,14 @@ def build_chatbot_tab():
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"**Protein Corona**\n"
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"- Hard vs soft corona\n"
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"- Vroman effect kinetics\n"
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"- ApoE/LDLR targeting\n"
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"- Corona engineering\n\n"
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"**Cancer Variants**\n"
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"- TP53 mutation spectrum\n"
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"- KRAS G12C resistance\n"
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"- ClinVar classification\n"
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"- gnomAD population AF\n\n"
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"**Liquid Biopsy**\n"
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"- ctDNA methylation\n"
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"- cfRNA biomarkers
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"**Cancer Vaccines**\n"
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"- mRNA neoantigen vaccines\n"
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"- siRNA tumor delivery"
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)
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gr.Markdown(
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"### 🔑 Confidence Flags\n"
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@@ -655,7 +645,6 @@ def build_chatbot_tab():
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user_input.submit(respond, inputs=[user_input, chatbox], outputs=[chatbox, user_input])
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clear_btn.click(lambda: ([], ""), outputs=[chatbox, user_input])
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# ─────────────────────────────────────────────
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# STANDALONE MODE
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# ─────────────────────────────────────────────
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def build_chatbot_tab():
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"""Called from app.py to inject the chatbot into Tab A6."""
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gr.Markdown(
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"**Status:** Model loads on first query (~30s)...\n\n"
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"Ask questions about LNP delivery, protein corona, cancer variants, or liquid biopsy. "
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"Answers are grounded in 20 indexed papers — never fabricated."
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)
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"**Protein Corona**\n"
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"- Hard vs soft corona\n"
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"- Vroman effect kinetics\n"
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"- ApoE/LDLR targeting\n\n"
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"**Cancer Variants**\n"
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"- TP53 mutation spectrum\n"
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"- KRAS G12C resistance\n"
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"- ClinVar classification\n\n"
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"**Liquid Biopsy**\n"
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"- ctDNA methylation\n"
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"- cfRNA biomarkers"
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)
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gr.Markdown(
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"### 🔑 Confidence Flags\n"
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user_input.submit(respond, inputs=[user_input, chatbox], outputs=[chatbox, user_input])
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clear_btn.click(lambda: ([], ""), outputs=[chatbox, user_input])
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# ─────────────────────────────────────────────
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# STANDALONE MODE
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# ─────────────────────────────────────────────
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