# Copyright (c) Facebook, Inc. and its affiliates. All Rights Reserved import argparse import contextlib import copy import io import itertools import json import logging import os import os.path as osp import pickle as pkl from collections import OrderedDict from utils.arg_parser import get_argparser import numpy as np import torch from detectron2.evaluation.evaluator import DatasetEvaluator from detectron2.evaluation.fast_eval_api import COCOeval_opt as COCOeval from detectron2.structures import BoxMode from detectron2.utils.logger import create_small_table from fvcore.common.file_io import PathManager from pycocotools.coco import COCO from tabulate import tabulate from torchvision.ops import box_iou class COCOEvaluator(DatasetEvaluator): """ Evaluate AR for object proposals, AP for instance detection/segmentation, AP for keypoint detection outputs using COCO's metrics. See http://cocodataset.org/#detection-eval and http://cocodataset.org/#keypoints-eval to understand its metrics. In addition to COCO, this evaluator is able to support any bounding box detection, instance segmentation, or keypoint detection dataset. """ def __init__( self, gt_json_file, pred_json_file, counting_gt_json_path, split="val", image_set=None, visualize_res=True, output_dir=None, ): """ Args: dataset_name (str): name of the dataset to be evaluated. It must have either the following corresponding metadata: "json_file": the path to the COCO format annotation Or it must be in detectron2's standard dataset format so it can be converted to COCO format automatically. cfg (CfgNode): config instance distributed (True): if True, will collect results from all ranks and run evaluation in the main process. Otherwise, will evaluate the results in the current process. output_dir (str): optional, an output directory to dump all results predicted on the dataset. The dump contains two files: 1. "instance_predictions.pth" a file in torch serialization format that contains all the raw original predictions. 2. "coco_instances_results.json" a json file in COCO's result format. """ self._tasks = [ "bbox", ] self._output_dir = output_dir self.counting_gt_json_path = counting_gt_json_path self._cpu_device = torch.device("cpu") # replace fewx with d2 self._logger = logging.getLogger(__name__) gt_json_file = PathManager.get_local_path(gt_json_file) with contextlib.redirect_stdout(io.StringIO()): self._coco_api = COCO(gt_json_file) pred_json_file = PathManager.get_local_path(pred_json_file) with contextlib.redirect_stdout(io.StringIO()): self.pred_coco_api = COCO(pred_json_file) with open(gt_json_file) as f: tmp_gt = json.load(f) info_images = tmp_gt["images"] self.map_id_2_name = dict() self.map_name_2_id = dict() for info_image in info_images: img_id = info_image["id"] img_name = info_image["file_name"] self.map_id_2_name[img_id] = img_name self.map_name_2_id[img_name] = img_id with open(counting_gt_json_path) as f: self.point_annos = json.load(f) # Test set json files do not contain annotations (evaluation must be # performed using the COCO evaluation server). self._do_evaluation = "annotations" in self._coco_api.dataset self.counting_dict = dict() self._predictions = [] self._image_set = image_set self.visualize_res = visualize_res self._vis_dir = osp.join(self._output_dir, "vis_res") os.makedirs(self._vis_dir, exist_ok=True) self.aps = [] self.split = split self.relative_error = [] def _tasks_from_config(self, cfg): """ Returns: tuple[str]: tasks that can be evaluated under the given configuration. """ tasks = ("bbox",) if cfg.MODEL.MASK_ON: tasks = tasks + ("segm",) return tasks def process(self): """ Args: inputs: the inputs to a COCO model (e.g., GeneralizedRCNN). It is a list of dict. Each dict corresponds to an image and contains keys like "height", "width", "file_name", "image_id". outputs: the outputs of a COCO model. It is a list of dicts with key "instances" that contains :class:`Instances`. """ if self._image_set is None: img_ids = self.pred_coco_api.getImgIds() else: img_ids = self._image_set print("number of images", len(img_ids)) for img_id in img_ids: img_name = self.map_id_2_name[img_id] anno_ids = self.pred_coco_api.getAnnIds([img_id]) point_anno = self.point_annos[img_name]["points"] pred_annos = self.pred_coco_api.loadAnns(anno_ids) img_info = self.pred_coco_api.loadImgs([img_id]) prediction = {"image_id": img_id} results = [] num_pred = len(pred_annos) for anno in pred_annos: box = anno["bbox"] x_cen, y_cen, w, h = box new_box = [x_cen, y_cen, w, h] result = { "image_id": anno["image_id"], "category_id": anno["category_id"], "bbox": new_box, "score": anno["score"], } results.append(result) num_pred = len(results) gt_anno_ids = self._coco_api.getAnnIds([img_id]) gt_annos = self._coco_api.loadAnns(gt_anno_ids) ap = 0 if self.visualize_res: import cv2 img = cv2.imread(osp.join(os.path.dirname(self.counting_gt_json_path), 'images_384_VarV2', img_name)) height, width, channels = img.shape height = 25 * len(pred_annos) + 10 score_img = np.zeros((height, width, 3), np.uint8) score_img[:] = 255 for idx, pred_anno in enumerate(pred_annos): pred_box = pred_anno["bbox"] x_cen, y_cen, w, h = pred_box pred_box = [int(x_cen), int(y_cen), int(w), int(h)] pred_x, pred_y, pred_w, pred_h = pred_box pred_x, pred_y, pred_w, pred_h = int(pred_x), int(pred_y), int(pred_w), int(pred_h) img = cv2.rectangle(img, (pred_x, pred_y), (pred_x + pred_w, pred_y + pred_h), (0, 165, 255), 2) vis_img_path = os.path.join(self._vis_dir, str(len(pred_annos)-len(gt_annos))+"_"+ img_name[:-4] + "_"+str(len(pred_annos))+".jpg") cv2.imwrite(vis_img_path, img) info = { "img_name": img_name, "img_id": img_id, "ap": ap, "count_gt": len(point_anno), "count_pred": num_pred, } self.aps.append(info) prediction["instances"] = results self._predictions.append(prediction) self.counting_dict[img_id] = {"gt": len(point_anno), "pred": num_pred} rel_err = abs(len(point_anno) - num_pred) / len(point_anno) self.relative_error.append(rel_err) def evaluate(self): predictions = self._predictions if len(predictions) == 0: self._logger.warning("[COCOEvaluator] Did not receive valid predictions.") return {} self._results = OrderedDict() self._eval_predictions(set(self._tasks), predictions) # Copy so the caller can do whatever with results cnt = 0 SAE = 0 # sum of absolute errors SSE = 0 # sum of square errors NAE = 0 SRE = 0 preds = [] gts = [] for ii, (img_id, anno) in enumerate(self.counting_dict.items()): gt_cnt = anno["gt"] pred_cnt = anno["pred"] cnt = cnt + 1 err = abs(gt_cnt - pred_cnt) preds.append(pred_cnt) gts.append(gt_cnt) SAE += err SSE += err ** 2 NAE += err / gt_cnt SRE += err ** 2 / gt_cnt # print("Pred cnts ", preds) # print("gts ", gts) # print(max(gts)) print("number of images: {}".format(cnt)) print("MAE: {:.2f}".format(SAE / cnt)) print("RMSE: {:.2f}".format((SSE / cnt) ** 0.5)) print("NAE: {:.4f}".format(NAE / cnt)) print("SRE: {:.2f}".format((SRE / cnt) ** 0.5)) print("Detect results") print(self._results) output_path = osp.join(self._output_dir, "each_img_infor"+self.split+".pkl") print("save to {}".format(output_path)) with open(output_path, "wb") as handle: pkl.dump(self.aps, handle, protocol=pkl.HIGHEST_PROTOCOL) print(10 * "**") return copy.deepcopy(self._results) def _eval_predictions(self, tasks, predictions): """ Evaluate predictions on the given tasks. Fill self._results with the metrics of the tasks. """ self._logger.info("Preparing results for COCO format ...") coco_results = list(itertools.chain(*[x["instances"] for x in predictions])) if not self._do_evaluation: self._logger.info("Annotations are not available for evaluation.") return self._logger.info("Evaluating predictions ...") for task in sorted(tasks): if self._image_set is not None: coco_eval = ( _evaluate_predictions_on_coco(self._coco_api, coco_results, task, self._image_set) if len(coco_results) > 0 else None # cocoapi does not handle empty results very well ) else: coco_eval = ( _evaluate_predictions_on_coco(self._coco_api, coco_results, task,) if len(coco_results) > 0 else None # cocoapi does not handle empty results very well ) res = self._derive_coco_results( # coco_eval, task, class_names=self._metadata.get("thing_classes") coco_eval, task, class_names=["fg",], ) self._results[task] = res def _derive_coco_results(self, coco_eval, iou_type, class_names=None): """ Derive the desired score numbers from summarized COCOeval. Args: coco_eval (None or COCOEval): None represents no predictions from model. iou_type (str): class_names (None or list[str]): if provided, will use it to predict per-category AP. Returns: a dict of {metric name: score} """ metrics = {"bbox": ["AP", "AP50", "AP75", "APs", "APm", "APl"],}[iou_type] if coco_eval is None: self._logger.warn("No predictions from the model!") return {metric: float("nan") for metric in metrics} # the standard metrics results = { metric: float(coco_eval.stats[idx] * 100 if coco_eval.stats[idx] >= 0 else "nan") for idx, metric in enumerate(metrics) } self._logger.info("Evaluation results for {}: \n".format(iou_type) + create_small_table(results)) if not np.isfinite(sum(results.values())): self._logger.info("Some metrics cannot be computed and is shown as NaN.") if class_names is None or len(class_names) <= 1: return results # Compute per-category AP # from https://github.com/facebookresearch/Detectron/blob/a6a835f5b8208c45d0dce217ce9bbda915f44df7/detectron/datasets/json_dataset_evaluator.py#L222-L252 # noqa precisions = coco_eval.eval["precision"] # precision has dims (iou, recall, cls, area range, max dets) assert len(class_names) == precisions.shape[2] results_per_category = [] for idx, name in enumerate(class_names): # area range index 0: all area ranges # max dets index -1: typically 100 per image precision = precisions[:, :, idx, 0, -1] precision = precision[precision > -1] ap = np.mean(precision) if precision.size else float("nan") results_per_category.append(("{}".format(name), float(ap * 100))) # tabulate it N_COLS = min(6, len(results_per_category) * 2) results_flatten = list(itertools.chain(*results_per_category)) results_2d = itertools.zip_longest(*[results_flatten[i::N_COLS] for i in range(N_COLS)]) table = tabulate( results_2d, tablefmt="pipe", floatfmt=".3f", headers=["category", "AP"] * (N_COLS // 2), numalign="left", ) self._logger.info("Per-category {} AP: \n".format(iou_type) + table) results.update({"AP-" + name: ap for name, ap in results_per_category}) return results def instances_to_coco_json(instances, img_id): """ Dump an "Instances" object to a COCO-format json that's used for evaluation. Args: instances (Instances): img_id (int): the image id Returns: list[dict]: list of json annotations in COCO format. """ num_instance = len(instances) if num_instance == 0: return [] boxes = instances.pred_boxes.tensor.numpy() boxes = BoxMode.convert(boxes, BoxMode.XYXY_ABS, BoxMode.XYWH_ABS) boxes = boxes.tolist() scores = instances.scores.tolist() classes = instances.pred_classes.tolist() results = [] for k in range(num_instance): result = { "image_id": img_id, "category_id": classes[k], "bbox": boxes[k], "score": scores[k], } results.append(result) return results class COCOevalMaxDets(COCOeval): """ Modified version of COCOeval for evaluating AP with a custom maxDets (by default for COCO, maxDets is 100) """ def summarize(self): """ Compute and display summary metrics for evaluation results given a custom value for max_dets_per_image """ def _summarize(ap=1, iouThr=None, areaRng="all", maxDets=100000): p = self.params iStr = " {:<18} {} @[ IoU={:<9} | area={:>6s} | maxDets={:>3d} ] = {:0.3f}" titleStr = "Average Precision" if ap == 1 else "Average Recall" typeStr = "(AP)" if ap == 1 else "(AR)" iouStr = ( "{:0.2f}:{:0.2f}".format(p.iouThrs[0], p.iouThrs[-1]) if iouThr is None else "{:0.2f}".format(iouThr) ) aind = [i for i, aRng in enumerate(p.areaRngLbl) if aRng == areaRng] mind = [i for i, mDet in enumerate(p.maxDets) if mDet == maxDets] if ap == 1: # dimension of precision: [TxRxKxAxM] s = self.eval["precision"] # IoU if iouThr is not None: t = np.where(iouThr == p.iouThrs)[0] s = s[t] s = s[:, :, :, aind, mind] else: # dimension of recall: [TxKxAxM] s = self.eval["recall"] if iouThr is not None: t = np.where(iouThr == p.iouThrs)[0] s = s[t] s = s[:, :, aind, mind] if len(s[s > -1]) == 0: mean_s = -1 else: mean_s = np.mean(s[s > -1]) print(iStr.format(titleStr, typeStr, iouStr, areaRng, maxDets, mean_s)) return mean_s def _summarizeDets(): stats = np.zeros((12,)) # Evaluate AP using the custom limit on maximum detections per image stats[0] = _summarize(1, maxDets=self.params.maxDets[2]) stats[1] = _summarize(1, iouThr=0.5, maxDets=self.params.maxDets[2]) stats[2] = _summarize(1, iouThr=0.75, maxDets=self.params.maxDets[2]) stats[3] = _summarize(1, areaRng="small", maxDets=self.params.maxDets[2]) stats[4] = _summarize(1, areaRng="medium", maxDets=self.params.maxDets[2]) stats[5] = _summarize(1, areaRng="large", maxDets=self.params.maxDets[2]) stats[6] = _summarize(0, maxDets=self.params.maxDets[0]) stats[7] = _summarize(0, maxDets=self.params.maxDets[1]) stats[8] = _summarize(0, maxDets=self.params.maxDets[2]) stats[9] = _summarize(0, areaRng="small", maxDets=self.params.maxDets[2]) stats[10] = _summarize(0, areaRng="medium", maxDets=self.params.maxDets[2]) stats[11] = _summarize(0, areaRng="large", maxDets=self.params.maxDets[2]) return stats def _summarizeKps(): stats = np.zeros((10,)) stats[0] = _summarize(1, maxDets=3000) stats[1] = _summarize(1, maxDets=3000, iouThr=0.5) stats[2] = _summarize(1, maxDets=3000, iouThr=0.75) stats[3] = _summarize(1, maxDets=3000, areaRng="medium") stats[4] = _summarize(1, maxDets=3000, areaRng="large") stats[5] = _summarize(0, maxDets=3000) stats[6] = _summarize(0, maxDets=3000, iouThr=0.5) stats[7] = _summarize(0, maxDets=3000, iouThr=0.75) stats[8] = _summarize(0, maxDets=3000, areaRng="medium") stats[9] = _summarize(0, maxDets=3000, areaRng="large") return stats if not self.eval: raise Exception("Please run accumulate() first") iouType = self.params.iouType if iouType == "segm" or iouType == "bbox": summarize = _summarizeDets elif iouType == "keypoints": summarize = _summarizeKps self.stats = summarize() def __str__(self): self.summarize() def _evaluate_predictions_on_coco( coco_gt, coco_results, iou_type, img_ids=None, max_dets_per_image=None, kpt_oks_sigmas=None ): """ Evaluate the coco results using COCOEval API. """ assert len(coco_results) > 0 coco_dt = coco_gt.loadRes(coco_results) # coco_eval = COCOeval(coco_gt, coco_dt, iou_type) coco_eval = COCOevalMaxDets(coco_gt, coco_dt, iou_type) if iou_type == "segm": coco_results = copy.deepcopy(coco_results) # When evaluating mask AP, if the results contain bbox, cocoapi will # use the box area as the area of the instance, instead of the mask area. # This leads to a different definition of small/medium/large. # We remove the bbox field to let mask AP use mask area. for c in coco_results: c.pop("bbox", None) # For COCO, the default max_dets_per_image is [1, 10, 100]. if max_dets_per_image is None: max_dets_per_image = [10000, 10000, 10000] else: assert ( len(max_dets_per_image) >= 3 ), "COCOeval requires maxDets (and max_dets_per_image) to have length at least 3" # In the case that user supplies a custom input for max_dets_per_image, # apply COCOevalMaxDets to evaluate AP with the custom input. if max_dets_per_image[2] != 100: coco_eval = COCOevalMaxDets(coco_gt, coco_dt, iou_type) if iou_type != "keypoints": coco_eval.params.maxDets = max_dets_per_image if img_ids is not None: coco_eval.params.imgIds = img_ids coco_eval.evaluate() coco_eval.accumulate() coco_eval.summarize() return coco_eval def get_args_parser(): parser = argparse.ArgumentParser("GECO2", add_help=False) parser.add_argument("--input_folder", required=True, type=str) args = parser.parse_args() return args if __name__ == '__main__': parser = argparse.ArgumentParser('GeCo', parents=[get_argparser()]) args = parser.parse_args() input_folder = '' dataset_folder = args.data_path print("Evaluating on validation set") gt_json_path = dataset_folder+"/annotations/instances_val.json" pred_json_path = 'geco2_val.json' counting_json_path = dataset_folder+"/annotation_FSC147_384.json" output_dir = input_folder coco_evaluator = COCOEvaluator( gt_json_file=gt_json_path, pred_json_file=pred_json_path, counting_gt_json_path=counting_json_path, output_dir=output_dir, visualize_res=False, split="val", ) coco_evaluator.process() coco_evaluator.evaluate() print("Evaluating on test set") gt_json_path = dataset_folder+"/annotations/instances_test.json" pred_json_path = 'geco2_test.json' counting_json_path = dataset_folder+"/annotation_FSC147_384.json" output_dir = input_folder coco_evaluator = COCOEvaluator( gt_json_file=gt_json_path, pred_json_file=pred_json_path, counting_gt_json_path=counting_json_path, output_dir=output_dir, visualize_res=False, split="test", ) coco_evaluator.process() coco_evaluator.evaluate()