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Initial upload of the demo application

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  1. README.md +21 -6
  2. requirements.txt +4 -0
README.md CHANGED
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  ---
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- title: CAFA ProtBERT Demo V1
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- emoji: 🚀
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- colorFrom: blue
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- colorTo: yellow
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  sdk: gradio
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- sdk_version: 6.6.0
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  app_file: app.py
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  pinned: false
 
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  ---
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- Check out the configuration reference at https://huggingface.co/docs/hub/spaces-config-reference
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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+ title: CAFA ProtBERT demo v1
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+ emoji: 🧬
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+ colorFrom: purple
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+ colorTo: blue
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  sdk: gradio
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+ sdk_version: 5.50.0
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  app_file: app.py
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  pinned: false
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+ license: apache-2.0
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  ---
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+ # CAFA ProtBERT demo v1
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+ This is a demo project to showcase my attempts at predicting the Protin functions - known as GO-terms based of the Prozein amino acid string.
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+ This is essentially the scope of the CAFA 6 challenge that was hosted on Kaggle - https://www.kaggle.com/competitions/cafa-6-protein-function-prediction/overview
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+ This demo takes in a single Protein sequence, and will then predict the corresonding GO-terms based of that, and isplay the score.
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+ Right now, no further post-processing or frills are available.
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+ The model used to perform the predictions is a fine tuned ProtBERT Model. See: https://huggingface.co/Rostlab/prot_bert
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+ And finally, the model isn't to good right now, there is much more experimentation ahead. For instance, the example was reported tith the following GO-terms:
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+ - GO:1990837
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+ - GO:0005515
requirements.txt ADDED
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+ timm
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+ gradio
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+ torch
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+ transformers