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Initial upload of the demo application
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README.md
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title: CAFA ProtBERT
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sdk: gradio
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app_file: app.py
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title: CAFA ProtBERT demo v1
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emoji: 🧬
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sdk: gradio
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sdk_version: 5.50.0
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app_file: app.py
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license: apache-2.0
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# CAFA ProtBERT demo v1
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This is a demo project to showcase my attempts at predicting the Protin functions - known as GO-terms based of the Prozein amino acid string.
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This is essentially the scope of the CAFA 6 challenge that was hosted on Kaggle - https://www.kaggle.com/competitions/cafa-6-protein-function-prediction/overview
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This demo takes in a single Protein sequence, and will then predict the corresonding GO-terms based of that, and isplay the score.
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Right now, no further post-processing or frills are available.
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The model used to perform the predictions is a fine tuned ProtBERT Model. See: https://huggingface.co/Rostlab/prot_bert
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And finally, the model isn't to good right now, there is much more experimentation ahead. For instance, the example was reported tith the following GO-terms:
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- GO:1990837
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- GO:0005515
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requirements.txt
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timm
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gradio
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torch
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transformers
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