fix(deploy): disable Gradio SSR + pin gradio==6.14.0 (HF Space stability) (#15)

Merge pull request #13 from KevinIsInCoding/feat/batch-extractor-api

feat(extraction): Batch API extractor (~50% cheaper), fix stale cost banner

Merge pull request #12 from KevinIsInCoding/feat/automated-seed-entities

Merge pull request #11 from KevinIsInCoding/feat/retrieval-grounding-trials-typo

Merge pull request #10 from KevinIsInCoding/feat/automated-seed-entities

feat: retrieval grounding, trial quality, and drug-name typo suggestions

feat: automate ALS seed entities from trials and paper corpus

Merge pull request #9 from KevinIsInCoding/docs/prfaq-compound-discovery-v2

docs(prfaq): update compound discovery paragraph opening

docs(prfaq): refine compound discovery paragraph opening

Merge pull request #8 from KevinIsInCoding/docs/prfaq-compound-discovery

docs(prfaq): add compound discovery narrative to press release

Merge pull request #7 from KevinIsInCoding/feat/rrf-cross-encoder-retrieval

feat: RRF merge + cross-encoder reranking for retrieval pipeline

fix(app): handle missing ChromaDB collection gracefully on startup

Merge pull request #6 from KevinIsInCoding/feat/stage4-kg-extraction

fix(app): use local SVG avatar to fix broken Gradio icon

fix(query): rank trials by status+relevance, raise cap from 5 to 10

feat(trials): replace hardcoded entity regex with LLM extraction

perf(extraction): switch to Haiku + add per-paper retry for missed PMIDs

Merge pull request #5 from KevinIsInCoding/feat/stage4-kg-extraction

feat: Stage 5 — Gradio UI + HuggingFace Spaces deployment

Merge pull request #4 from KevinIsInCoding/feat/stage4-kg-extraction

Merge pull request #3 from KevinIsInCoding/fix/pmc-elink-id-mapping

feat(rag): switch embedding model to BioLORD-2023-C

feat: Stage 4 — entity extraction + knowledge graph + KG-expanded RAG

feat: Stage 3 — RAG pipeline + working end-to-end query

Merge pull request #2 from KevinIsInCoding/fix/pmc-elink-id-mapping

fix(pmc): add rich progress bar to get_pmcids (499 calls, ~3 min)

fix(pmc): use per-PMID elink instead of batch to preserve ID mapping

Merge pull request #1 from KevinIsInCoding/docs/prfaq-dateline

docs: add launch date to PRFAQ press release dateline

docs: correct ALS genetics claim in PRFAQ, strengthen rationale

docs: add PRFAQ for candle-fire

feat: initial project scaffold and Stage 2 ingestion pipeline