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Browse files- app.py +449 -0
- hrnet.py +395 -0
- requirements.txt +14 -0
app.py
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| 1 |
+
"""
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| 2 |
+
Cephalometric Landmark Detection API
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| 3 |
+
HRNet-W32 based automatic landmark detection for lateral cephalometric radiographs
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| 4 |
+
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| 5 |
+
Space para integración con Klinafy
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| 6 |
+
"""
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| 7 |
+
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| 8 |
+
import os
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| 9 |
+
import json
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| 10 |
+
import numpy as np
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| 11 |
+
from PIL import Image
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| 12 |
+
import torch
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| 13 |
+
import torch.nn.functional as F
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| 14 |
+
from huggingface_hub import hf_hub_download
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| 15 |
+
import gradio as gr
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| 16 |
+
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| 17 |
+
from hrnet import get_hrnet_w32
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| 18 |
+
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| 19 |
+
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| 20 |
+
# ============================================================================
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| 21 |
+
# CONFIGURACIÓN
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| 22 |
+
# ============================================================================
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| 23 |
+
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| 24 |
+
MODEL_REPO = "cwlachap/hrnet-cephalometric-landmark-detection"
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| 25 |
+
MODEL_FILE = "best_model.pth"
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| 26 |
+
INPUT_SIZE = 768
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| 27 |
+
HEATMAP_SIZE = 192
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| 28 |
+
NUM_LANDMARKS = 19
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| 29 |
+
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| 30 |
+
# Nombres de los 19 landmarks en orden del modelo
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| 31 |
+
LANDMARK_NAMES = [
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| 32 |
+
"S", # 0 - Sella turcica
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| 33 |
+
"N", # 1 - Nasion
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| 34 |
+
"Or", # 2 - Orbitale
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| 35 |
+
"Po", # 3 - Porion
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| 36 |
+
"Ba", # 4 - Basion
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| 37 |
+
"Pt", # 5 - Pterygoid point
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| 38 |
+
"ANS", # 6 - Anterior Nasal Spine
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| 39 |
+
"PNS", # 7 - Posterior Nasal Spine
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| 40 |
+
"A", # 8 - Point A (Subspinale)
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| 41 |
+
"U1T", # 9 - Upper Incisor Tip
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| 42 |
+
"U1R", # 10 - Upper Incisor Root
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| 43 |
+
"L1T", # 11 - Lower Incisor Tip
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| 44 |
+
"L1R", # 12 - Lower Incisor Root
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| 45 |
+
"B", # 13 - Point B (Supramentale)
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| 46 |
+
"Pog", # 14 - Pogonion
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| 47 |
+
"Gn", # 15 - Gnathion
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| 48 |
+
"Me", # 16 - Menton
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| 49 |
+
"Go", # 17 - Gonion
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| 50 |
+
"Ar" # 18 - Articulare
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| 51 |
+
]
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| 52 |
+
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| 53 |
+
# Colores para visualización (RGB)
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| 54 |
+
LANDMARK_COLORS = {
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| 55 |
+
"cranial": (255, 0, 0), # Rojo - S, N, Ba, Ar
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| 56 |
+
"orbital": (0, 255, 0), # Verde - Or, Po
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| 57 |
+
"maxilar": (0, 0, 255), # Azul - ANS, PNS, A, Pt
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| 58 |
+
"dental": (255, 255, 0), # Amarillo - U1T, U1R, L1T, L1R
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| 59 |
+
"mandibular": (255, 0, 255) # Magenta - B, Pog, Gn, Me, Go
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| 60 |
+
}
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| 61 |
+
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| 62 |
+
LANDMARK_GROUPS = {
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| 63 |
+
"S": "cranial", "N": "cranial", "Ba": "cranial", "Ar": "cranial",
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| 64 |
+
"Or": "orbital", "Po": "orbital",
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| 65 |
+
"ANS": "maxilar", "PNS": "maxilar", "A": "maxilar", "Pt": "maxilar",
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| 66 |
+
"U1T": "dental", "U1R": "dental", "L1T": "dental", "L1R": "dental",
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| 67 |
+
"B": "mandibular", "Pog": "mandibular", "Gn": "mandibular",
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| 68 |
+
"Me": "mandibular", "Go": "mandibular"
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| 69 |
+
}
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| 70 |
+
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| 71 |
+
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| 72 |
+
# ============================================================================
|
| 73 |
+
# MODELO
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| 74 |
+
# ============================================================================
|
| 75 |
+
|
| 76 |
+
# Variable global para el modelo
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| 77 |
+
model = None
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| 78 |
+
device = torch.device('cuda' if torch.cuda.is_available() else 'cpu')
|
| 79 |
+
|
| 80 |
+
|
| 81 |
+
def load_model():
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| 82 |
+
"""Carga el modelo HRNet desde Hugging Face Hub"""
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| 83 |
+
global model
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| 84 |
+
|
| 85 |
+
if model is not None:
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| 86 |
+
return model
|
| 87 |
+
|
| 88 |
+
print(f"Cargando modelo en {device}...")
|
| 89 |
+
|
| 90 |
+
# Descargar pesos
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| 91 |
+
model_path = hf_hub_download(
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| 92 |
+
repo_id=MODEL_REPO,
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| 93 |
+
filename=MODEL_FILE
|
| 94 |
+
)
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| 95 |
+
|
| 96 |
+
# Crear modelo
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| 97 |
+
model = get_hrnet_w32(num_landmarks=NUM_LANDMARKS)
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| 98 |
+
|
| 99 |
+
# Cargar pesos
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| 100 |
+
checkpoint = torch.load(model_path, map_location=device, weights_only=False)
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| 101 |
+
|
| 102 |
+
# Manejar diferentes formatos de checkpoint
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| 103 |
+
if 'model_state_dict' in checkpoint:
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| 104 |
+
state_dict = checkpoint['model_state_dict']
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| 105 |
+
elif 'state_dict' in checkpoint:
|
| 106 |
+
state_dict = checkpoint['state_dict']
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| 107 |
+
else:
|
| 108 |
+
state_dict = checkpoint
|
| 109 |
+
|
| 110 |
+
# Limpiar prefijos si existen
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| 111 |
+
new_state_dict = {}
|
| 112 |
+
for k, v in state_dict.items():
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| 113 |
+
name = k.replace('module.', '') # Remover prefijo de DataParallel
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| 114 |
+
new_state_dict[name] = v
|
| 115 |
+
|
| 116 |
+
model.load_state_dict(new_state_dict, strict=False)
|
| 117 |
+
model.to(device)
|
| 118 |
+
model.eval()
|
| 119 |
+
|
| 120 |
+
print("Modelo cargado exitosamente!")
|
| 121 |
+
return model
|
| 122 |
+
|
| 123 |
+
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| 124 |
+
# ============================================================================
|
| 125 |
+
# PREPROCESAMIENTO
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| 126 |
+
# ============================================================================
|
| 127 |
+
|
| 128 |
+
def preprocess_image(image):
|
| 129 |
+
"""
|
| 130 |
+
Preprocesa la imagen para el modelo
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| 131 |
+
|
| 132 |
+
Args:
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| 133 |
+
image: PIL Image o numpy array
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| 134 |
+
|
| 135 |
+
Returns:
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| 136 |
+
tensor: Tensor normalizado [1, 3, 768, 768]
|
| 137 |
+
original_size: (width, height) original
|
| 138 |
+
"""
|
| 139 |
+
# Convertir a PIL si es necesario
|
| 140 |
+
if isinstance(image, np.ndarray):
|
| 141 |
+
image = Image.fromarray(image)
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| 142 |
+
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| 143 |
+
# Guardar tamaño original
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| 144 |
+
original_size = image.size # (width, height)
|
| 145 |
+
|
| 146 |
+
# Convertir a RGB si es necesario
|
| 147 |
+
if image.mode != 'RGB':
|
| 148 |
+
image = image.convert('RGB')
|
| 149 |
+
|
| 150 |
+
# Redimensionar a 768x768
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| 151 |
+
image = image.resize((INPUT_SIZE, INPUT_SIZE), Image.Resampling.BILINEAR)
|
| 152 |
+
|
| 153 |
+
# Convertir a tensor
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| 154 |
+
img_array = np.array(image).astype(np.float32) / 255.0
|
| 155 |
+
|
| 156 |
+
# Normalizar con ImageNet stats
|
| 157 |
+
mean = np.array([0.485, 0.456, 0.406])
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| 158 |
+
std = np.array([0.229, 0.224, 0.225])
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| 159 |
+
img_array = (img_array - mean) / std
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| 160 |
+
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| 161 |
+
# Cambiar a formato CHW y agregar batch dimension
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| 162 |
+
img_tensor = torch.from_numpy(img_array.transpose(2, 0, 1)).float()
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| 163 |
+
img_tensor = img_tensor.unsqueeze(0)
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| 164 |
+
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| 165 |
+
return img_tensor, original_size
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| 166 |
+
|
| 167 |
+
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| 168 |
+
# ============================================================================
|
| 169 |
+
# POSTPROCESAMIENTO
|
| 170 |
+
# ============================================================================
|
| 171 |
+
|
| 172 |
+
def get_max_preds(heatmaps):
|
| 173 |
+
"""
|
| 174 |
+
Obtiene las coordenadas del máximo de cada heatmap
|
| 175 |
+
|
| 176 |
+
Args:
|
| 177 |
+
heatmaps: tensor [batch, num_landmarks, H, W]
|
| 178 |
+
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| 179 |
+
Returns:
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| 180 |
+
preds: coordenadas [batch, num_landmarks, 2]
|
| 181 |
+
maxvals: valores de confianza [batch, num_landmarks, 1]
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| 182 |
+
"""
|
| 183 |
+
batch_size = heatmaps.shape[0]
|
| 184 |
+
num_joints = heatmaps.shape[1]
|
| 185 |
+
width = heatmaps.shape[3]
|
| 186 |
+
|
| 187 |
+
heatmaps_reshaped = heatmaps.reshape((batch_size, num_joints, -1))
|
| 188 |
+
idx = np.argmax(heatmaps_reshaped, axis=2)
|
| 189 |
+
maxvals = np.amax(heatmaps_reshaped, axis=2)
|
| 190 |
+
|
| 191 |
+
maxvals = maxvals.reshape((batch_size, num_joints, 1))
|
| 192 |
+
idx = idx.reshape((batch_size, num_joints, 1))
|
| 193 |
+
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| 194 |
+
preds = np.tile(idx, (1, 1, 2)).astype(np.float32)
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| 195 |
+
preds[:, :, 0] = (preds[:, :, 0]) % width
|
| 196 |
+
preds[:, :, 1] = np.floor((preds[:, :, 1]) / width)
|
| 197 |
+
|
| 198 |
+
return preds, maxvals
|
| 199 |
+
|
| 200 |
+
|
| 201 |
+
def heatmaps_to_landmarks(heatmaps, original_size):
|
| 202 |
+
"""
|
| 203 |
+
Convierte heatmaps a coordenadas de landmarks
|
| 204 |
+
|
| 205 |
+
Args:
|
| 206 |
+
heatmaps: tensor [1, 19, H, W]
|
| 207 |
+
original_size: (width, height) de la imagen original
|
| 208 |
+
|
| 209 |
+
Returns:
|
| 210 |
+
landmarks: lista de dicts con name, x, y, confidence
|
| 211 |
+
"""
|
| 212 |
+
heatmaps_np = heatmaps.cpu().numpy()
|
| 213 |
+
|
| 214 |
+
# Obtener coordenadas del máximo
|
| 215 |
+
preds, maxvals = get_max_preds(heatmaps_np)
|
| 216 |
+
|
| 217 |
+
# Escalar a tamaño original
|
| 218 |
+
orig_w, orig_h = original_size
|
| 219 |
+
heatmap_h, heatmap_w = heatmaps_np.shape[2], heatmaps_np.shape[3]
|
| 220 |
+
|
| 221 |
+
scale_x = orig_w / heatmap_w
|
| 222 |
+
scale_y = orig_h / heatmap_h
|
| 223 |
+
|
| 224 |
+
landmarks = []
|
| 225 |
+
for i in range(NUM_LANDMARKS):
|
| 226 |
+
x = float(preds[0, i, 0] * scale_x)
|
| 227 |
+
y = float(preds[0, i, 1] * scale_y)
|
| 228 |
+
conf = float(maxvals[0, i, 0])
|
| 229 |
+
|
| 230 |
+
landmarks.append({
|
| 231 |
+
"name": LANDMARK_NAMES[i],
|
| 232 |
+
"x": round(x, 2),
|
| 233 |
+
"y": round(y, 2),
|
| 234 |
+
"confidence": round(conf, 4),
|
| 235 |
+
"group": LANDMARK_GROUPS[LANDMARK_NAMES[i]]
|
| 236 |
+
})
|
| 237 |
+
|
| 238 |
+
return landmarks
|
| 239 |
+
|
| 240 |
+
|
| 241 |
+
# ============================================================================
|
| 242 |
+
# INFERENCIA
|
| 243 |
+
# ============================================================================
|
| 244 |
+
|
| 245 |
+
def detect_landmarks(image):
|
| 246 |
+
"""
|
| 247 |
+
Detecta landmarks cefalométricos en una imagen
|
| 248 |
+
|
| 249 |
+
Args:
|
| 250 |
+
image: PIL Image o numpy array
|
| 251 |
+
|
| 252 |
+
Returns:
|
| 253 |
+
landmarks: lista de dicts con name, x, y, confidence
|
| 254 |
+
annotated_image: imagen con landmarks dibujados
|
| 255 |
+
"""
|
| 256 |
+
# Cargar modelo si no está cargado
|
| 257 |
+
model = load_model()
|
| 258 |
+
|
| 259 |
+
# Preprocesar
|
| 260 |
+
img_tensor, original_size = preprocess_image(image)
|
| 261 |
+
img_tensor = img_tensor.to(device)
|
| 262 |
+
|
| 263 |
+
# Inferencia
|
| 264 |
+
with torch.no_grad():
|
| 265 |
+
heatmaps = model(img_tensor)
|
| 266 |
+
|
| 267 |
+
# Postprocesar
|
| 268 |
+
landmarks = heatmaps_to_landmarks(heatmaps, original_size)
|
| 269 |
+
|
| 270 |
+
# Crear imagen anotada
|
| 271 |
+
annotated = draw_landmarks(image, landmarks)
|
| 272 |
+
|
| 273 |
+
return landmarks, annotated
|
| 274 |
+
|
| 275 |
+
|
| 276 |
+
def draw_landmarks(image, landmarks, radius=5):
|
| 277 |
+
"""
|
| 278 |
+
Dibuja los landmarks en la imagen
|
| 279 |
+
|
| 280 |
+
Args:
|
| 281 |
+
image: PIL Image o numpy array
|
| 282 |
+
landmarks: lista de dicts con coordenadas
|
| 283 |
+
radius: radio del círculo
|
| 284 |
+
|
| 285 |
+
Returns:
|
| 286 |
+
PIL Image con landmarks dibujados
|
| 287 |
+
"""
|
| 288 |
+
from PIL import ImageDraw, ImageFont
|
| 289 |
+
|
| 290 |
+
if isinstance(image, np.ndarray):
|
| 291 |
+
image = Image.fromarray(image)
|
| 292 |
+
|
| 293 |
+
# Crear copia para dibujar
|
| 294 |
+
img_draw = image.copy()
|
| 295 |
+
if img_draw.mode != 'RGB':
|
| 296 |
+
img_draw = img_draw.convert('RGB')
|
| 297 |
+
|
| 298 |
+
draw = ImageDraw.Draw(img_draw)
|
| 299 |
+
|
| 300 |
+
# Intentar cargar fuente, usar default si falla
|
| 301 |
+
try:
|
| 302 |
+
font = ImageFont.truetype("/usr/share/fonts/truetype/dejavu/DejaVuSans.ttf", 12)
|
| 303 |
+
except:
|
| 304 |
+
font = ImageFont.load_default()
|
| 305 |
+
|
| 306 |
+
for lm in landmarks:
|
| 307 |
+
x, y = lm['x'], lm['y']
|
| 308 |
+
color = LANDMARK_COLORS[lm['group']]
|
| 309 |
+
|
| 310 |
+
# Dibujar círculo
|
| 311 |
+
draw.ellipse([x-radius, y-radius, x+radius, y+radius],
|
| 312 |
+
fill=color, outline=(255, 255, 255))
|
| 313 |
+
|
| 314 |
+
# Dibujar nombre
|
| 315 |
+
draw.text((x+radius+2, y-radius), lm['name'],
|
| 316 |
+
fill=(255, 255, 255), font=font,
|
| 317 |
+
stroke_width=1, stroke_fill=(0, 0, 0))
|
| 318 |
+
|
| 319 |
+
return img_draw
|
| 320 |
+
|
| 321 |
+
|
| 322 |
+
# ============================================================================
|
| 323 |
+
# INTERFAZ GRADIO
|
| 324 |
+
# ============================================================================
|
| 325 |
+
|
| 326 |
+
def process_image(image):
|
| 327 |
+
"""Función principal para Gradio"""
|
| 328 |
+
if image is None:
|
| 329 |
+
return None, "Por favor sube una imagen cefalométrica"
|
| 330 |
+
|
| 331 |
+
try:
|
| 332 |
+
landmarks, annotated = detect_landmarks(image)
|
| 333 |
+
|
| 334 |
+
# Formatear JSON para mostrar
|
| 335 |
+
json_output = json.dumps({
|
| 336 |
+
"success": True,
|
| 337 |
+
"num_landmarks": len(landmarks),
|
| 338 |
+
"landmarks": landmarks
|
| 339 |
+
}, indent=2)
|
| 340 |
+
|
| 341 |
+
return annotated, json_output
|
| 342 |
+
|
| 343 |
+
except Exception as e:
|
| 344 |
+
return None, json.dumps({
|
| 345 |
+
"success": False,
|
| 346 |
+
"error": str(e)
|
| 347 |
+
}, indent=2)
|
| 348 |
+
|
| 349 |
+
|
| 350 |
+
def api_predict(image):
|
| 351 |
+
"""Endpoint API para integración con Klinafy"""
|
| 352 |
+
if image is None:
|
| 353 |
+
return {"success": False, "error": "No image provided"}
|
| 354 |
+
|
| 355 |
+
try:
|
| 356 |
+
landmarks, _ = detect_landmarks(image)
|
| 357 |
+
|
| 358 |
+
return {
|
| 359 |
+
"success": True,
|
| 360 |
+
"model": "HRNet-W32",
|
| 361 |
+
"num_landmarks": len(landmarks),
|
| 362 |
+
"landmarks": landmarks
|
| 363 |
+
}
|
| 364 |
+
|
| 365 |
+
except Exception as e:
|
| 366 |
+
return {
|
| 367 |
+
"success": False,
|
| 368 |
+
"error": str(e)
|
| 369 |
+
}
|
| 370 |
+
|
| 371 |
+
|
| 372 |
+
# ============================================================================
|
| 373 |
+
# CREAR APP
|
| 374 |
+
# ============================================================================
|
| 375 |
+
|
| 376 |
+
# Cargar modelo al inicio
|
| 377 |
+
print("Inicializando modelo...")
|
| 378 |
+
load_model()
|
| 379 |
+
|
| 380 |
+
# Crear interfaz Gradio
|
| 381 |
+
with gr.Blocks(title="Cephalometric Landmark Detection") as demo:
|
| 382 |
+
gr.Markdown("""
|
| 383 |
+
# 🦷 Detección de Landmarks Cefalométricos
|
| 384 |
+
|
| 385 |
+
Detección automática de **19 puntos cefalométricos** usando HRNet-W32.
|
| 386 |
+
|
| 387 |
+
### Landmarks detectados:
|
| 388 |
+
- **Craneales** (rojo): S, N, Ba, Ar
|
| 389 |
+
- **Orbitales** (verde): Or, Po
|
| 390 |
+
- **Maxilares** (azul): ANS, PNS, A, Pt
|
| 391 |
+
- **Dentales** (amarillo): U1T, U1R, L1T, L1R
|
| 392 |
+
- **Mandibulares** (magenta): B, Pog, Gn, Me, Go
|
| 393 |
+
|
| 394 |
+
---
|
| 395 |
+
""")
|
| 396 |
+
|
| 397 |
+
with gr.Row():
|
| 398 |
+
with gr.Column():
|
| 399 |
+
input_image = gr.Image(
|
| 400 |
+
label="Radiografía Cefalométrica Lateral",
|
| 401 |
+
type="pil"
|
| 402 |
+
)
|
| 403 |
+
detect_btn = gr.Button("🔍 Detectar Landmarks", variant="primary")
|
| 404 |
+
|
| 405 |
+
with gr.Column():
|
| 406 |
+
output_image = gr.Image(
|
| 407 |
+
label="Imagen con Landmarks"
|
| 408 |
+
)
|
| 409 |
+
output_json = gr.Code(
|
| 410 |
+
label="Coordenadas (JSON)",
|
| 411 |
+
language="json"
|
| 412 |
+
)
|
| 413 |
+
|
| 414 |
+
detect_btn.click(
|
| 415 |
+
fn=process_image,
|
| 416 |
+
inputs=[input_image],
|
| 417 |
+
outputs=[output_image, output_json]
|
| 418 |
+
)
|
| 419 |
+
|
| 420 |
+
gr.Markdown("""
|
| 421 |
+
---
|
| 422 |
+
### 📡 API Endpoint
|
| 423 |
+
|
| 424 |
+
Para integración programática (ej. Klinafy):
|
| 425 |
+
|
| 426 |
+
```javascript
|
| 427 |
+
const response = await fetch('https://YOUR-SPACE.hf.space/api/predict', {
|
| 428 |
+
method: 'POST',
|
| 429 |
+
headers: { 'Content-Type': 'application/json' },
|
| 430 |
+
body: JSON.stringify({ data: [base64Image] })
|
| 431 |
+
});
|
| 432 |
+
const result = await response.json();
|
| 433 |
+
// result.data[0] = { success: true, landmarks: [...] }
|
| 434 |
+
```
|
| 435 |
+
|
| 436 |
+
---
|
| 437 |
+
**Modelo**: HRNet-W32 | **Precisión**: MRE ~1.5mm | **Licencia**: MIT
|
| 438 |
+
""")
|
| 439 |
+
|
| 440 |
+
|
| 441 |
+
# Habilitar API
|
| 442 |
+
demo.queue()
|
| 443 |
+
|
| 444 |
+
if __name__ == "__main__":
|
| 445 |
+
demo.launch(
|
| 446 |
+
server_name="0.0.0.0",
|
| 447 |
+
server_port=7860,
|
| 448 |
+
share=False
|
| 449 |
+
)
|
hrnet.py
ADDED
|
@@ -0,0 +1,395 @@
|
|
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|
| 1 |
+
"""
|
| 2 |
+
HRNet-W32 Architecture for Cephalometric Landmark Detection
|
| 3 |
+
Based on: Deep High-Resolution Representation Learning for Visual Recognition
|
| 4 |
+
"""
|
| 5 |
+
|
| 6 |
+
import torch
|
| 7 |
+
import torch.nn as nn
|
| 8 |
+
import torch.nn.functional as F
|
| 9 |
+
|
| 10 |
+
|
| 11 |
+
def conv3x3(in_planes, out_planes, stride=1):
|
| 12 |
+
"""3x3 convolution with padding"""
|
| 13 |
+
return nn.Conv2d(in_planes, out_planes, kernel_size=3, stride=stride,
|
| 14 |
+
padding=1, bias=False)
|
| 15 |
+
|
| 16 |
+
|
| 17 |
+
class BasicBlock(nn.Module):
|
| 18 |
+
expansion = 1
|
| 19 |
+
|
| 20 |
+
def __init__(self, inplanes, planes, stride=1, downsample=None):
|
| 21 |
+
super(BasicBlock, self).__init__()
|
| 22 |
+
self.conv1 = conv3x3(inplanes, planes, stride)
|
| 23 |
+
self.bn1 = nn.BatchNorm2d(planes)
|
| 24 |
+
self.relu = nn.ReLU(inplace=True)
|
| 25 |
+
self.conv2 = conv3x3(planes, planes)
|
| 26 |
+
self.bn2 = nn.BatchNorm2d(planes)
|
| 27 |
+
self.downsample = downsample
|
| 28 |
+
self.stride = stride
|
| 29 |
+
|
| 30 |
+
def forward(self, x):
|
| 31 |
+
residual = x
|
| 32 |
+
out = self.conv1(x)
|
| 33 |
+
out = self.bn1(out)
|
| 34 |
+
out = self.relu(out)
|
| 35 |
+
out = self.conv2(out)
|
| 36 |
+
out = self.bn2(out)
|
| 37 |
+
if self.downsample is not None:
|
| 38 |
+
residual = self.downsample(x)
|
| 39 |
+
out += residual
|
| 40 |
+
out = self.relu(out)
|
| 41 |
+
return out
|
| 42 |
+
|
| 43 |
+
|
| 44 |
+
class Bottleneck(nn.Module):
|
| 45 |
+
expansion = 4
|
| 46 |
+
|
| 47 |
+
def __init__(self, inplanes, planes, stride=1, downsample=None):
|
| 48 |
+
super(Bottleneck, self).__init__()
|
| 49 |
+
self.conv1 = nn.Conv2d(inplanes, planes, kernel_size=1, bias=False)
|
| 50 |
+
self.bn1 = nn.BatchNorm2d(planes)
|
| 51 |
+
self.conv2 = nn.Conv2d(planes, planes, kernel_size=3, stride=stride,
|
| 52 |
+
padding=1, bias=False)
|
| 53 |
+
self.bn2 = nn.BatchNorm2d(planes)
|
| 54 |
+
self.conv3 = nn.Conv2d(planes, planes * self.expansion, kernel_size=1,
|
| 55 |
+
bias=False)
|
| 56 |
+
self.bn3 = nn.BatchNorm2d(planes * self.expansion)
|
| 57 |
+
self.relu = nn.ReLU(inplace=True)
|
| 58 |
+
self.downsample = downsample
|
| 59 |
+
self.stride = stride
|
| 60 |
+
|
| 61 |
+
def forward(self, x):
|
| 62 |
+
residual = x
|
| 63 |
+
out = self.conv1(x)
|
| 64 |
+
out = self.bn1(out)
|
| 65 |
+
out = self.relu(out)
|
| 66 |
+
out = self.conv2(out)
|
| 67 |
+
out = self.bn2(out)
|
| 68 |
+
out = self.relu(out)
|
| 69 |
+
out = self.conv3(out)
|
| 70 |
+
out = self.bn3(out)
|
| 71 |
+
if self.downsample is not None:
|
| 72 |
+
residual = self.downsample(x)
|
| 73 |
+
out += residual
|
| 74 |
+
out = self.relu(out)
|
| 75 |
+
return out
|
| 76 |
+
|
| 77 |
+
|
| 78 |
+
class HighResolutionModule(nn.Module):
|
| 79 |
+
def __init__(self, num_branches, blocks, num_blocks, num_inchannels,
|
| 80 |
+
num_channels, fuse_method, multi_scale_output=True):
|
| 81 |
+
super(HighResolutionModule, self).__init__()
|
| 82 |
+
self._check_branches(num_branches, num_blocks, num_inchannels, num_channels)
|
| 83 |
+
|
| 84 |
+
self.num_inchannels = num_inchannels
|
| 85 |
+
self.fuse_method = fuse_method
|
| 86 |
+
self.num_branches = num_branches
|
| 87 |
+
self.multi_scale_output = multi_scale_output
|
| 88 |
+
|
| 89 |
+
self.branches = self._make_branches(num_branches, blocks, num_blocks, num_channels)
|
| 90 |
+
self.fuse_layers = self._make_fuse_layers()
|
| 91 |
+
self.relu = nn.ReLU(inplace=True)
|
| 92 |
+
|
| 93 |
+
def _check_branches(self, num_branches, num_blocks, num_inchannels, num_channels):
|
| 94 |
+
if num_branches != len(num_blocks):
|
| 95 |
+
raise ValueError('NUM_BRANCHES != len(NUM_BLOCKS)')
|
| 96 |
+
if num_branches != len(num_channels):
|
| 97 |
+
raise ValueError('NUM_BRANCHES != len(NUM_CHANNELS)')
|
| 98 |
+
if num_branches != len(num_inchannels):
|
| 99 |
+
raise ValueError('NUM_BRANCHES != len(NUM_INCHANNELS)')
|
| 100 |
+
|
| 101 |
+
def _make_one_branch(self, branch_index, block, num_blocks, num_channels, stride=1):
|
| 102 |
+
downsample = None
|
| 103 |
+
if stride != 1 or self.num_inchannels[branch_index] != num_channels[branch_index] * block.expansion:
|
| 104 |
+
downsample = nn.Sequential(
|
| 105 |
+
nn.Conv2d(self.num_inchannels[branch_index],
|
| 106 |
+
num_channels[branch_index] * block.expansion,
|
| 107 |
+
kernel_size=1, stride=stride, bias=False),
|
| 108 |
+
nn.BatchNorm2d(num_channels[branch_index] * block.expansion),
|
| 109 |
+
)
|
| 110 |
+
|
| 111 |
+
layers = []
|
| 112 |
+
layers.append(block(self.num_inchannels[branch_index],
|
| 113 |
+
num_channels[branch_index], stride, downsample))
|
| 114 |
+
self.num_inchannels[branch_index] = num_channels[branch_index] * block.expansion
|
| 115 |
+
for i in range(1, num_blocks[branch_index]):
|
| 116 |
+
layers.append(block(self.num_inchannels[branch_index], num_channels[branch_index]))
|
| 117 |
+
|
| 118 |
+
return nn.Sequential(*layers)
|
| 119 |
+
|
| 120 |
+
def _make_branches(self, num_branches, block, num_blocks, num_channels):
|
| 121 |
+
branches = []
|
| 122 |
+
for i in range(num_branches):
|
| 123 |
+
branches.append(self._make_one_branch(i, block, num_blocks, num_channels))
|
| 124 |
+
return nn.ModuleList(branches)
|
| 125 |
+
|
| 126 |
+
def _make_fuse_layers(self):
|
| 127 |
+
if self.num_branches == 1:
|
| 128 |
+
return None
|
| 129 |
+
|
| 130 |
+
num_branches = self.num_branches
|
| 131 |
+
num_inchannels = self.num_inchannels
|
| 132 |
+
fuse_layers = []
|
| 133 |
+
for i in range(num_branches if self.multi_scale_output else 1):
|
| 134 |
+
fuse_layer = []
|
| 135 |
+
for j in range(num_branches):
|
| 136 |
+
if j > i:
|
| 137 |
+
fuse_layer.append(nn.Sequential(
|
| 138 |
+
nn.Conv2d(num_inchannels[j], num_inchannels[i], 1, 1, 0, bias=False),
|
| 139 |
+
nn.BatchNorm2d(num_inchannels[i])))
|
| 140 |
+
elif j == i:
|
| 141 |
+
fuse_layer.append(None)
|
| 142 |
+
else:
|
| 143 |
+
conv3x3s = []
|
| 144 |
+
for k in range(i - j):
|
| 145 |
+
if k == i - j - 1:
|
| 146 |
+
num_outchannels_conv3x3 = num_inchannels[i]
|
| 147 |
+
conv3x3s.append(nn.Sequential(
|
| 148 |
+
nn.Conv2d(num_inchannels[j], num_outchannels_conv3x3, 3, 2, 1, bias=False),
|
| 149 |
+
nn.BatchNorm2d(num_outchannels_conv3x3)))
|
| 150 |
+
else:
|
| 151 |
+
num_outchannels_conv3x3 = num_inchannels[j]
|
| 152 |
+
conv3x3s.append(nn.Sequential(
|
| 153 |
+
nn.Conv2d(num_inchannels[j], num_outchannels_conv3x3, 3, 2, 1, bias=False),
|
| 154 |
+
nn.BatchNorm2d(num_outchannels_conv3x3),
|
| 155 |
+
nn.ReLU(inplace=True)))
|
| 156 |
+
fuse_layer.append(nn.Sequential(*conv3x3s))
|
| 157 |
+
fuse_layers.append(nn.ModuleList(fuse_layer))
|
| 158 |
+
|
| 159 |
+
return nn.ModuleList(fuse_layers)
|
| 160 |
+
|
| 161 |
+
def get_num_inchannels(self):
|
| 162 |
+
return self.num_inchannels
|
| 163 |
+
|
| 164 |
+
def forward(self, x):
|
| 165 |
+
if self.num_branches == 1:
|
| 166 |
+
return [self.branches[0](x[0])]
|
| 167 |
+
|
| 168 |
+
for i in range(self.num_branches):
|
| 169 |
+
x[i] = self.branches[i](x[i])
|
| 170 |
+
|
| 171 |
+
x_fuse = []
|
| 172 |
+
for i in range(len(self.fuse_layers)):
|
| 173 |
+
y = x[0] if i == 0 else self.fuse_layers[i][0](x[0])
|
| 174 |
+
for j in range(1, self.num_branches):
|
| 175 |
+
if i == j:
|
| 176 |
+
y = y + x[j]
|
| 177 |
+
elif j > i:
|
| 178 |
+
width_output = x[i].shape[-1]
|
| 179 |
+
height_output = x[i].shape[-2]
|
| 180 |
+
y = y + F.interpolate(
|
| 181 |
+
self.fuse_layers[i][j](x[j]),
|
| 182 |
+
size=[height_output, width_output],
|
| 183 |
+
mode='bilinear', align_corners=True)
|
| 184 |
+
else:
|
| 185 |
+
y = y + self.fuse_layers[i][j](x[j])
|
| 186 |
+
x_fuse.append(self.relu(y))
|
| 187 |
+
|
| 188 |
+
return x_fuse
|
| 189 |
+
|
| 190 |
+
|
| 191 |
+
class HRNetW32(nn.Module):
|
| 192 |
+
"""
|
| 193 |
+
HRNet-W32 for Cephalometric Landmark Detection
|
| 194 |
+
Input: 768x768 grayscale/RGB image
|
| 195 |
+
Output: 19 landmark heatmaps (192x192)
|
| 196 |
+
"""
|
| 197 |
+
|
| 198 |
+
def __init__(self, num_landmarks=19):
|
| 199 |
+
super(HRNetW32, self).__init__()
|
| 200 |
+
|
| 201 |
+
self.num_landmarks = num_landmarks
|
| 202 |
+
|
| 203 |
+
# Stem
|
| 204 |
+
self.conv1 = nn.Conv2d(3, 64, kernel_size=3, stride=2, padding=1, bias=False)
|
| 205 |
+
self.bn1 = nn.BatchNorm2d(64)
|
| 206 |
+
self.conv2 = nn.Conv2d(64, 64, kernel_size=3, stride=2, padding=1, bias=False)
|
| 207 |
+
self.bn2 = nn.BatchNorm2d(64)
|
| 208 |
+
self.relu = nn.ReLU(inplace=True)
|
| 209 |
+
|
| 210 |
+
# Stage 1
|
| 211 |
+
self.layer1 = self._make_layer(Bottleneck, 64, 64, 4)
|
| 212 |
+
|
| 213 |
+
# Stage 2
|
| 214 |
+
self.stage2_cfg = {
|
| 215 |
+
'NUM_MODULES': 1,
|
| 216 |
+
'NUM_BRANCHES': 2,
|
| 217 |
+
'NUM_BLOCKS': [4, 4],
|
| 218 |
+
'NUM_CHANNELS': [32, 64],
|
| 219 |
+
'BLOCK': BasicBlock,
|
| 220 |
+
'FUSE_METHOD': 'SUM'
|
| 221 |
+
}
|
| 222 |
+
num_channels = self.stage2_cfg['NUM_CHANNELS']
|
| 223 |
+
block = self.stage2_cfg['BLOCK']
|
| 224 |
+
num_channels = [num_channels[i] * block.expansion for i in range(len(num_channels))]
|
| 225 |
+
self.transition1 = self._make_transition_layer([256], num_channels)
|
| 226 |
+
self.stage2, pre_stage_channels = self._make_stage(self.stage2_cfg, num_channels)
|
| 227 |
+
|
| 228 |
+
# Stage 3
|
| 229 |
+
self.stage3_cfg = {
|
| 230 |
+
'NUM_MODULES': 4,
|
| 231 |
+
'NUM_BRANCHES': 3,
|
| 232 |
+
'NUM_BLOCKS': [4, 4, 4],
|
| 233 |
+
'NUM_CHANNELS': [32, 64, 128],
|
| 234 |
+
'BLOCK': BasicBlock,
|
| 235 |
+
'FUSE_METHOD': 'SUM'
|
| 236 |
+
}
|
| 237 |
+
num_channels = self.stage3_cfg['NUM_CHANNELS']
|
| 238 |
+
block = self.stage3_cfg['BLOCK']
|
| 239 |
+
num_channels = [num_channels[i] * block.expansion for i in range(len(num_channels))]
|
| 240 |
+
self.transition2 = self._make_transition_layer(pre_stage_channels, num_channels)
|
| 241 |
+
self.stage3, pre_stage_channels = self._make_stage(self.stage3_cfg, num_channels)
|
| 242 |
+
|
| 243 |
+
# Stage 4
|
| 244 |
+
self.stage4_cfg = {
|
| 245 |
+
'NUM_MODULES': 3,
|
| 246 |
+
'NUM_BRANCHES': 4,
|
| 247 |
+
'NUM_BLOCKS': [4, 4, 4, 4],
|
| 248 |
+
'NUM_CHANNELS': [32, 64, 128, 256],
|
| 249 |
+
'BLOCK': BasicBlock,
|
| 250 |
+
'FUSE_METHOD': 'SUM'
|
| 251 |
+
}
|
| 252 |
+
num_channels = self.stage4_cfg['NUM_CHANNELS']
|
| 253 |
+
block = self.stage4_cfg['BLOCK']
|
| 254 |
+
num_channels = [num_channels[i] * block.expansion for i in range(len(num_channels))]
|
| 255 |
+
self.transition3 = self._make_transition_layer(pre_stage_channels, num_channels)
|
| 256 |
+
self.stage4, pre_stage_channels = self._make_stage(self.stage4_cfg, num_channels, multi_scale_output=True)
|
| 257 |
+
|
| 258 |
+
# Head
|
| 259 |
+
last_inp_channels = sum(pre_stage_channels)
|
| 260 |
+
self.head = nn.Sequential(
|
| 261 |
+
nn.Conv2d(last_inp_channels, last_inp_channels, kernel_size=1, stride=1, padding=0),
|
| 262 |
+
nn.BatchNorm2d(last_inp_channels),
|
| 263 |
+
nn.ReLU(inplace=True),
|
| 264 |
+
nn.Conv2d(last_inp_channels, num_landmarks, kernel_size=1, stride=1, padding=0)
|
| 265 |
+
)
|
| 266 |
+
|
| 267 |
+
def _make_layer(self, block, inplanes, planes, blocks, stride=1):
|
| 268 |
+
downsample = None
|
| 269 |
+
if stride != 1 or inplanes != planes * block.expansion:
|
| 270 |
+
downsample = nn.Sequential(
|
| 271 |
+
nn.Conv2d(inplanes, planes * block.expansion,
|
| 272 |
+
kernel_size=1, stride=stride, bias=False),
|
| 273 |
+
nn.BatchNorm2d(planes * block.expansion),
|
| 274 |
+
)
|
| 275 |
+
|
| 276 |
+
layers = []
|
| 277 |
+
layers.append(block(inplanes, planes, stride, downsample))
|
| 278 |
+
inplanes = planes * block.expansion
|
| 279 |
+
for i in range(1, blocks):
|
| 280 |
+
layers.append(block(inplanes, planes))
|
| 281 |
+
|
| 282 |
+
return nn.Sequential(*layers)
|
| 283 |
+
|
| 284 |
+
def _make_transition_layer(self, num_channels_pre_layer, num_channels_cur_layer):
|
| 285 |
+
num_branches_cur = len(num_channels_cur_layer)
|
| 286 |
+
num_branches_pre = len(num_channels_pre_layer)
|
| 287 |
+
|
| 288 |
+
transition_layers = []
|
| 289 |
+
for i in range(num_branches_cur):
|
| 290 |
+
if i < num_branches_pre:
|
| 291 |
+
if num_channels_cur_layer[i] != num_channels_pre_layer[i]:
|
| 292 |
+
transition_layers.append(nn.Sequential(
|
| 293 |
+
nn.Conv2d(num_channels_pre_layer[i], num_channels_cur_layer[i], 3, 1, 1, bias=False),
|
| 294 |
+
nn.BatchNorm2d(num_channels_cur_layer[i]),
|
| 295 |
+
nn.ReLU(inplace=True)))
|
| 296 |
+
else:
|
| 297 |
+
transition_layers.append(None)
|
| 298 |
+
else:
|
| 299 |
+
conv3x3s = []
|
| 300 |
+
for j in range(i + 1 - num_branches_pre):
|
| 301 |
+
inchannels = num_channels_pre_layer[-1]
|
| 302 |
+
outchannels = num_channels_cur_layer[i] if j == i - num_branches_pre else inchannels
|
| 303 |
+
conv3x3s.append(nn.Sequential(
|
| 304 |
+
nn.Conv2d(inchannels, outchannels, 3, 2, 1, bias=False),
|
| 305 |
+
nn.BatchNorm2d(outchannels),
|
| 306 |
+
nn.ReLU(inplace=True)))
|
| 307 |
+
transition_layers.append(nn.Sequential(*conv3x3s))
|
| 308 |
+
|
| 309 |
+
return nn.ModuleList(transition_layers)
|
| 310 |
+
|
| 311 |
+
def _make_stage(self, layer_config, num_inchannels, multi_scale_output=True):
|
| 312 |
+
num_modules = layer_config['NUM_MODULES']
|
| 313 |
+
num_branches = layer_config['NUM_BRANCHES']
|
| 314 |
+
num_blocks = layer_config['NUM_BLOCKS']
|
| 315 |
+
num_channels = layer_config['NUM_CHANNELS']
|
| 316 |
+
block = layer_config['BLOCK']
|
| 317 |
+
fuse_method = layer_config['FUSE_METHOD']
|
| 318 |
+
|
| 319 |
+
modules = []
|
| 320 |
+
for i in range(num_modules):
|
| 321 |
+
if not multi_scale_output and i == num_modules - 1:
|
| 322 |
+
reset_multi_scale_output = False
|
| 323 |
+
else:
|
| 324 |
+
reset_multi_scale_output = True
|
| 325 |
+
modules.append(
|
| 326 |
+
HighResolutionModule(num_branches, block, num_blocks, num_inchannels,
|
| 327 |
+
num_channels, fuse_method, reset_multi_scale_output)
|
| 328 |
+
)
|
| 329 |
+
num_inchannels = modules[-1].get_num_inchannels()
|
| 330 |
+
|
| 331 |
+
return nn.Sequential(*modules), num_inchannels
|
| 332 |
+
|
| 333 |
+
def forward(self, x):
|
| 334 |
+
# Stem
|
| 335 |
+
x = self.conv1(x)
|
| 336 |
+
x = self.bn1(x)
|
| 337 |
+
x = self.relu(x)
|
| 338 |
+
x = self.conv2(x)
|
| 339 |
+
x = self.bn2(x)
|
| 340 |
+
x = self.relu(x)
|
| 341 |
+
|
| 342 |
+
# Stage 1
|
| 343 |
+
x = self.layer1(x)
|
| 344 |
+
|
| 345 |
+
# Stage 2
|
| 346 |
+
x_list = []
|
| 347 |
+
for i in range(self.stage2_cfg['NUM_BRANCHES']):
|
| 348 |
+
if self.transition1[i] is not None:
|
| 349 |
+
x_list.append(self.transition1[i](x))
|
| 350 |
+
else:
|
| 351 |
+
x_list.append(x)
|
| 352 |
+
y_list = self.stage2(x_list)
|
| 353 |
+
|
| 354 |
+
# Stage 3
|
| 355 |
+
x_list = []
|
| 356 |
+
for i in range(self.stage3_cfg['NUM_BRANCHES']):
|
| 357 |
+
if self.transition2[i] is not None:
|
| 358 |
+
if i < self.stage2_cfg['NUM_BRANCHES']:
|
| 359 |
+
x_list.append(self.transition2[i](y_list[i]))
|
| 360 |
+
else:
|
| 361 |
+
x_list.append(self.transition2[i](y_list[-1]))
|
| 362 |
+
else:
|
| 363 |
+
x_list.append(y_list[i])
|
| 364 |
+
y_list = self.stage3(x_list)
|
| 365 |
+
|
| 366 |
+
# Stage 4
|
| 367 |
+
x_list = []
|
| 368 |
+
for i in range(self.stage4_cfg['NUM_BRANCHES']):
|
| 369 |
+
if self.transition3[i] is not None:
|
| 370 |
+
if i < self.stage3_cfg['NUM_BRANCHES']:
|
| 371 |
+
x_list.append(self.transition3[i](y_list[i]))
|
| 372 |
+
else:
|
| 373 |
+
x_list.append(self.transition3[i](y_list[-1]))
|
| 374 |
+
else:
|
| 375 |
+
x_list.append(y_list[i])
|
| 376 |
+
x = self.stage4(x_list)
|
| 377 |
+
|
| 378 |
+
# Upscale to highest resolution
|
| 379 |
+
x0_h, x0_w = x[0].size(2), x[0].size(3)
|
| 380 |
+
x1 = F.interpolate(x[1], size=(x0_h, x0_w), mode='bilinear', align_corners=True)
|
| 381 |
+
x2 = F.interpolate(x[2], size=(x0_h, x0_w), mode='bilinear', align_corners=True)
|
| 382 |
+
x3 = F.interpolate(x[3], size=(x0_h, x0_w), mode='bilinear', align_corners=True)
|
| 383 |
+
|
| 384 |
+
x = torch.cat([x[0], x1, x2, x3], 1)
|
| 385 |
+
|
| 386 |
+
# Head
|
| 387 |
+
x = self.head(x)
|
| 388 |
+
|
| 389 |
+
return x
|
| 390 |
+
|
| 391 |
+
|
| 392 |
+
def get_hrnet_w32(num_landmarks=19):
|
| 393 |
+
"""Create HRNet-W32 model for cephalometric landmark detection"""
|
| 394 |
+
model = HRNetW32(num_landmarks=num_landmarks)
|
| 395 |
+
return model
|
requirements.txt
ADDED
|
@@ -0,0 +1,14 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
# Core ML
|
| 2 |
+
torch>=2.0.0
|
| 3 |
+
torchvision>=0.15.0
|
| 4 |
+
|
| 5 |
+
# Hugging Face
|
| 6 |
+
huggingface_hub>=0.19.0
|
| 7 |
+
gradio>=4.0.0
|
| 8 |
+
|
| 9 |
+
# Image processing
|
| 10 |
+
Pillow>=10.0.0
|
| 11 |
+
numpy>=1.24.0
|
| 12 |
+
|
| 13 |
+
# Optional but useful
|
| 14 |
+
scipy>=1.10.0
|