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len = 26 bug
Browse files
tiger.py
CHANGED
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@@ -51,7 +51,7 @@ def process_data(transcript_seq: str):
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transcript_seq = transcript_seq.upper()
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# get all target sites
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-
target_seq = [transcript_seq[i: i + TARGET_LEN] for i in range(len(transcript_seq) - TARGET_LEN)]
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# prepare guide sequences
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guide_seq = sequence_complement([seq[CONTEXT_5P:len(seq) - CONTEXT_3P] for seq in target_seq])
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@@ -166,4 +166,4 @@ def tiger_exhibit(transcript):
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if __name__ == '__main__':
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# simple test case
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print(tiger_exhibit('
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transcript_seq = transcript_seq.upper()
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# get all target sites
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target_seq = [transcript_seq[i: i + TARGET_LEN] for i in range(len(transcript_seq) - TARGET_LEN + 1)]
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# prepare guide sequences
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guide_seq = sequence_complement([seq[CONTEXT_5P:len(seq) - CONTEXT_3P] for seq in target_seq])
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if __name__ == '__main__':
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# simple test case
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print(tiger_exhibit('AAAAAAAAAAAAAAAAAAAAAAAAAA'.lower())) # first 50 from EIF3B-003's CDS
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