astirn commited on
Commit
1e16292
·
1 Parent(s): 350befe

len = 26 bug

Browse files
Files changed (1) hide show
  1. tiger.py +2 -2
tiger.py CHANGED
@@ -51,7 +51,7 @@ def process_data(transcript_seq: str):
51
  transcript_seq = transcript_seq.upper()
52
 
53
  # get all target sites
54
- target_seq = [transcript_seq[i: i + TARGET_LEN] for i in range(len(transcript_seq) - TARGET_LEN)]
55
 
56
  # prepare guide sequences
57
  guide_seq = sequence_complement([seq[CONTEXT_5P:len(seq) - CONTEXT_3P] for seq in target_seq])
@@ -166,4 +166,4 @@ def tiger_exhibit(transcript):
166
  if __name__ == '__main__':
167
 
168
  # simple test case
169
- print(tiger_exhibit('ATGCAGGACGCGGAGAACGTGGCGGTGCCCGAGGCGGCCGAGGAGCGCGC'.lower())) # first 50 from EIF3B-003's CDS
 
51
  transcript_seq = transcript_seq.upper()
52
 
53
  # get all target sites
54
+ target_seq = [transcript_seq[i: i + TARGET_LEN] for i in range(len(transcript_seq) - TARGET_LEN + 1)]
55
 
56
  # prepare guide sequences
57
  guide_seq = sequence_complement([seq[CONTEXT_5P:len(seq) - CONTEXT_3P] for seq in target_seq])
 
166
  if __name__ == '__main__':
167
 
168
  # simple test case
169
+ print(tiger_exhibit('AAAAAAAAAAAAAAAAAAAAAAAAAA'.lower())) # first 50 from EIF3B-003's CDS