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Running
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CPU Upgrade
Running
on
CPU Upgrade
flip guide sequences for biologists
Browse files
tiger.py
CHANGED
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@@ -211,6 +211,10 @@ def tiger_exhibit(transcripts: pd.DataFrame):
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off_targets = find_off_targets(on_target_predictions)
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off_target_predictions = predict_off_target(off_targets, model=tiger)
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return on_target_predictions.reset_index(drop=True), off_target_predictions.reset_index(drop=True)
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off_targets = find_off_targets(on_target_predictions)
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off_target_predictions = predict_off_target(off_targets, model=tiger)
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# reverse guide sequences
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on_target_predictions['Guide'] = on_target_predictions['Guide'].apply(lambda s: s[::-1])
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off_target_predictions['Guide'] = off_target_predictions['Guide'].apply(lambda s: s[::-1])
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return on_target_predictions.reset_index(drop=True), off_target_predictions.reset_index(drop=True)
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