astirn commited on
Commit
8c452e8
·
1 Parent(s): 6216d88

flip guide sequences for biologists

Browse files
Files changed (1) hide show
  1. tiger.py +4 -0
tiger.py CHANGED
@@ -211,6 +211,10 @@ def tiger_exhibit(transcripts: pd.DataFrame):
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  off_targets = find_off_targets(on_target_predictions)
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  off_target_predictions = predict_off_target(off_targets, model=tiger)
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  return on_target_predictions.reset_index(drop=True), off_target_predictions.reset_index(drop=True)
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  off_targets = find_off_targets(on_target_predictions)
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  off_target_predictions = predict_off_target(off_targets, model=tiger)
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+ # reverse guide sequences
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+ on_target_predictions['Guide'] = on_target_predictions['Guide'].apply(lambda s: s[::-1])
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+ off_target_predictions['Guide'] = off_target_predictions['Guide'].apply(lambda s: s[::-1])
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+
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  return on_target_predictions.reset_index(drop=True), off_target_predictions.reset_index(drop=True)
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