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Running
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Running
on
CPU Upgrade
don't keep uploaded files
Browse files
app.py
CHANGED
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@@ -1,3 +1,4 @@
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import tiger
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import pandas as pd
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import streamlit as st
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@@ -53,6 +54,7 @@ def initiate_run():
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with open(fasta_path, 'w') as f:
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f.write(st.session_state.fasta_entry.getvalue().decode('utf-8'))
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transcripts = tiger.load_transcripts([fasta_path], enforce_unique_ids=False)
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# convert to upper case as used by tokenizer
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transcripts[tiger.SEQ_COL] = transcripts[tiger.SEQ_COL].apply(lambda s: s.upper())
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import os
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import tiger
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import pandas as pd
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import streamlit as st
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with open(fasta_path, 'w') as f:
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f.write(st.session_state.fasta_entry.getvalue().decode('utf-8'))
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transcripts = tiger.load_transcripts([fasta_path], enforce_unique_ids=False)
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os.remove(fasta_path)
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# convert to upper case as used by tokenizer
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transcripts[tiger.SEQ_COL] = transcripts[tiger.SEQ_COL].apply(lambda s: s.upper())
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