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tiger / tiger.py

Commit History

reference transcripts update

a6ef2fa

astirn commited on Mar 2

updated tiger.py

d5e0e34

astirn commited on Sep 11, 2023

single prediction bug fix

12459b9

astirn commited on Jul 21, 2023

delete transcript ID for manually uploaded sequences

21a4f44

astirn commited on Jul 20, 2023

titration bug fix

f230aaf

astirn commited on Jul 17, 2023

calibration active for webtool

699c100

astirn commited on Jul 17, 2023

tiger transform back online

a2e6f51

astirn commited on Jul 17, 2023

before and after calibration checks out

0b0f412

astirn commited on Jul 17, 2023

calibration working as expected

0590665

astirn commited on Jul 17, 2023

bug fix for zero off-targets

ab4b6b4

astirn commited on Jul 9, 2023

small index issue

cce961e

astirn commited on Jul 9, 2023

common code to finalize tables

6e3a126

astirn commited on Jul 8, 2023

titration mode!

42a3866

astirn commited on Jul 8, 2023

small bug from last commit

ccfd7e1

astirn commited on Jul 8, 2023

some changes needed to support titration

546d4e5

astirn commited on Jul 8, 2023

cleanup

2e86d75

astirn commited on Jul 7, 2023

very close

e43faaa

astirn commited on Jul 7, 2023

progress

0178c63

astirn commited on Jul 6, 2023

tiger.py changes in support of app.py

5b03846

astirn commited on Jul 6, 2023

tiger.py finishing touches

4da7dd2

astirn commited on Jul 5, 2023

cleanup

03279e4

astirn commited on Jul 5, 2023

cleanup off-target table

7932f13

astirn commited on Jul 5, 2023

cleanup

7233b48

astirn commited on Jul 5, 2023

cleanup and bug fixes

79e1e8e

astirn commited on Jul 5, 2023

simplified code

ecb653b

astirn commited on Jul 4, 2023

massive cleanup with better table columns

9ccfeb4

astirn commited on Jul 4, 2023

progress

da98162

astirn commited on Jul 2, 2023

web tool titration clipping slightly wider than testing

d99c64e

astirn commited on Jun 23, 2023

moved titration ratio function to web code

47e7aeb

astirn commited on Jun 23, 2023

progress

e78fda7

astirn commited on Jun 6, 2023

unit-interval tiger model with web tool output transformation

cf79aee

astirn commited on May 29, 2023

minor fix

fda1178

astirn commited on May 16, 2023

ability to run locally

a2591b6

astirn commited on May 6, 2023

prevent empty off target crash

c650039

ericckim03 commited on May 1, 2023

Merge branch 'main' of https://huggingface.co/spaces/Knowles-Lab/tiger into main

56f2fde

ericckim03 commited on May 1, 2023

prevent crash when off target is empty and add option for on target only

99a0d01

ericckim03 commited on May 1, 2023

Merge branch 'main' of https://huggingface.co/spaces/Knowles-Lab/tiger into main

6009ef4

astirn commited on Feb 26, 2023

flip guide sequences for biologists

8c452e8

astirn commited on Feb 23, 2023

Cleaning up previous fasta files

9f169cd

ericckim03 commited on Feb 23, 2023

enable status bar

89ee386

ericckim03 commited on Feb 16, 2023

missed fix

6216d88

astirn commited on Feb 10, 2023

memory leak plugged

0450f78

astirn commited on Feb 10, 2023

corrections

6727689

astirn commited on Feb 10, 2023

fasta directory optimizations

f311bf4

astirn commited on Feb 9, 2023

support for app

89ffb34

astirn commited on Feb 9, 2023

find top guides for all transcripts and then scan off-targets simultaneously

f57c1f6

astirn commited on Feb 9, 2023

load_transcripts function

d78d0d1

astirn commited on Feb 9, 2023

off-targets for gencode.v19.lncRNA_transcripts.fa.gz

e38af10

astirn commited on Feb 9, 2023

insufficient target context cases handled

a690e02

astirn commited on Jan 6, 2023

back to old test case

cbbf8c9

astirn commited on Jan 6, 2023