Spaces:
Sleeping
Sleeping
Deploy Multimodal Clinical AI app
Browse files- app.py +32 -8
- checkpoints/fusion_model/fusion_layer4_tuned.pt +3 -0
- demo/__init__.py +1 -0
- demo/utils/__init__.py +1 -0
- demo/utils/saliency.py +1 -0
app.py
CHANGED
|
@@ -3,18 +3,42 @@ Hugging Face Spaces Deployment App
|
|
| 3 |
Multimodal Clinical AI - Chest X-ray Analysis
|
| 4 |
"""
|
| 5 |
import os
|
|
|
|
| 6 |
import torch
|
| 7 |
import torch.nn.functional as F
|
| 8 |
from PIL import Image
|
| 9 |
import streamlit as st
|
| 10 |
-
|
| 11 |
-
|
| 12 |
-
|
| 13 |
-
|
| 14 |
-
|
| 15 |
-
|
| 16 |
-
|
| 17 |
-
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 18 |
|
| 19 |
# --------------------------------------------------
|
| 20 |
# Page configuration
|
|
|
|
| 3 |
Multimodal Clinical AI - Chest X-ray Analysis
|
| 4 |
"""
|
| 5 |
import os
|
| 6 |
+
import sys
|
| 7 |
import torch
|
| 8 |
import torch.nn.functional as F
|
| 9 |
from PIL import Image
|
| 10 |
import streamlit as st
|
| 11 |
+
|
| 12 |
+
# Add current directory to path for imports
|
| 13 |
+
sys.path.insert(0, os.path.dirname(__file__))
|
| 14 |
+
|
| 15 |
+
# Try importing from demo.utils, with fallback handling
|
| 16 |
+
try:
|
| 17 |
+
from demo.utils.load_model import load_fusion_model
|
| 18 |
+
from demo.utils.grad_cam import GradCAM, overlay_cam
|
| 19 |
+
from demo.utils.saliency import (
|
| 20 |
+
compute_text_saliency,
|
| 21 |
+
merge_wordpieces,
|
| 22 |
+
filter_tokens,
|
| 23 |
+
highlight_text,
|
| 24 |
+
)
|
| 25 |
+
except ImportError as e:
|
| 26 |
+
# If demo folder structure doesn't exist, show helpful error
|
| 27 |
+
import traceback
|
| 28 |
+
st.error(f"❌ Import error: {e}")
|
| 29 |
+
st.info("💡 Please ensure the following files are in your Space:")
|
| 30 |
+
st.code("""
|
| 31 |
+
demo/
|
| 32 |
+
__init__.py
|
| 33 |
+
utils/
|
| 34 |
+
__init__.py
|
| 35 |
+
load_model.py
|
| 36 |
+
grad_cam.py
|
| 37 |
+
saliency.py
|
| 38 |
+
""")
|
| 39 |
+
with st.expander("🔍 Full error details"):
|
| 40 |
+
st.code(traceback.format_exc())
|
| 41 |
+
st.stop()
|
| 42 |
|
| 43 |
# --------------------------------------------------
|
| 44 |
# Page configuration
|
checkpoints/fusion_model/fusion_layer4_tuned.pt
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:89dcb3f9e5fba4eb0746851c2e2326c6368c9aabc231b60b12b2b639bfe97cd7
|
| 3 |
+
size 480755648
|
demo/__init__.py
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
# Demo package
|
demo/utils/__init__.py
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
# Demo utils package
|
demo/utils/saliency.py
CHANGED
|
@@ -56,6 +56,7 @@ def merge_wordpieces(tokens, scores):
|
|
| 56 |
merged_scores.append(current_score)
|
| 57 |
|
| 58 |
return merged_tokens, merged_scores
|
|
|
|
| 59 |
def filter_tokens(tokens, scores, attention_mask):
|
| 60 |
clean_tokens = []
|
| 61 |
clean_scores = []
|
|
|
|
| 56 |
merged_scores.append(current_score)
|
| 57 |
|
| 58 |
return merged_tokens, merged_scores
|
| 59 |
+
|
| 60 |
def filter_tokens(tokens, scores, attention_mask):
|
| 61 |
clean_tokens = []
|
| 62 |
clean_scores = []
|