Update Background_Substraction.py

Background_Substraction.py

@@ -19,10 +19,8 @@ from scipy import signal
 import plotly.figure_factory as ff
 import plotly
 import plotly.graph_objs as go
-from plotly.offline import download_plotlyjs, init_notebook_mode, plot, iplot 
+from plotly.offline import download_plotlyjs, plot
 import plotly.express as px
-init_notebook_mode(connected = True)
-
 from my_modules import *
 
 
@@ -34,24 +32,6 @@ warnings.filterwarnings('ignore', category= FutureWarning)
 warnings.filterwarnings('ignore', category= UserWarning)
 
 
-# In[3]:
-
-
-get_ipython().run_line_magic('store', '-r base_dir')
-get_ipython().run_line_magic('store', '-r set_path')
-get_ipython().run_line_magic('store', '-r ls_samples')
-get_ipython().run_line_magic('store', '-r selected_metadata_files')
-
-
-# In[4]:
-
-
-print(base_dir)
-print(set_path)
-print(ls_samples)
-print(selected_metadata_files)
-
-
 # ## II.2. *DIRECTORIES
 
 # In[5]:
@@ -74,6 +54,11 @@ print(selected_metadata_files)
 #set_name = 'Set_A'
 #set_name = 'test'
 
+base_dir = 'wetransfer_data-zip_2024-05-17_1431/'
+set_path = 'test'
+selected_metadata_files = ['Slide_B_DD1s1.one_1.tif.csv', 'Slide_B_DD1s1.one_2.tif.csv']
+ls_samples = ['Ashlar_Exposure_Time.csv', 'new_data.csv', 'DD3S1.csv', 'DD3S2.csv', 'DD3S3.csv', 'TMA.csv']
+
 set_name = set_path