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Runtime error
Runtime error
Interface
Browse files
app.py
CHANGED
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@@ -8,7 +8,8 @@ import numpy as np
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import periodictable
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from crystal_toolkit.settings import SETTINGS
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from dash import dcc, html
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from dash.dependencies import Input, Output
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from datasets import load_dataset
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from pymatgen.analysis.structure_analyzer import SpacegroupAnalyzer
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from pymatgen.core import Structure
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@@ -18,7 +19,7 @@ top_k = 500
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# Load only the train split of the dataset
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dataset = load_dataset(
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"LeMaterial/
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token=HF_TOKEN,
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split="train",
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columns=[
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@@ -42,7 +43,7 @@ dataset = load_dataset(
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"chemical_formula_descriptive",
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"total_magnetization",
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],
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)
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display_columns = [
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"chemical_formula_descriptive",
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@@ -97,6 +98,11 @@ server = app.server # Expose the server for deployment
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# Define the app layout
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layout = html.Div(
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[
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html.H1(
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html.B("Interactive Crystal Viewer"),
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style={"textAlign": "center", "margin-top": "20px"},
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@@ -104,24 +110,56 @@ layout = html.Div(
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html.Div(
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[
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html.Div(
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id="structure-container",
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style={
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"width": "
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"display": "inline-block",
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"verticalAlign": "top",
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},
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),
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html.Div(
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id="properties-container",
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style={
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"width": "
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"display": "inline-block",
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"paddingLeft": "4%",
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"verticalAlign": "top",
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},
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),
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],
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style={
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),
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html.Div(
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[
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@@ -143,8 +181,9 @@ layout = html.Div(
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id="materials-input",
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),
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],
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style={
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"width": "
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},
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),
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],
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@@ -156,48 +195,90 @@ layout = html.Div(
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),
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],
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style={
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"width": "
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"verticalAlign": "top",
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},
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),
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],
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-
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"
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"
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"
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},
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style_header={"fontWeight": "bold", "backgroundColor": "lightgrey"},
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style_cell={"textAlign": "center"},
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style_as_list_view=True,
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),
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],
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style={
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),
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# html.Button("Display Material", id="display-button", n_clicks=0),
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],
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@@ -259,12 +340,25 @@ def on_submit_materials_input(n_clicks, query):
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],
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# Input("display-button", "n_clicks"),
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Input("table", "active_cell"),
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)
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def display_material(active_cell):
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if not active_cell:
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return
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-
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row = dataset[mapping_table_idx_dataset_idx[idx_active]]
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structure = Structure(
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@@ -291,7 +385,7 @@ def display_material(active_cell):
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"Crystal system": sga.get_crystal_system(),
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"International Spacegroup": sga.get_symmetry_dataset().international,
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"Magnetic moments (μB/f.u.)": row["magnetic_moments"],
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"Stress tensor (kB)": row["stress_tensor"],
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"Forces on atoms (eV/A)": row["forces"],
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"Bader charges (e-)": row["charges"],
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"DFT Functional": row["functional"],
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@@ -302,21 +396,71 @@ def display_material(active_cell):
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[
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html.Tbody(
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[
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html.Tr(
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for key, value in properties.items()
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]
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)
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],
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style={
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"border": "1px solid black",
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"width": "100%",
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"borderCollapse": "collapse",
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},
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)
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return structure_component.layout(), properties_html
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# Register crystal toolkit with the app
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ctc.register_crystal_toolkit(app, layout)
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import periodictable
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from crystal_toolkit.settings import SETTINGS
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from dash import dcc, html
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from dash.dependencies import Input, Output, State
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from dash_breakpoints import WindowBreakpoints
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from datasets import load_dataset
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from pymatgen.analysis.structure_analyzer import SpacegroupAnalyzer
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from pymatgen.core import Structure
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# Load only the train split of the dataset
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dataset = load_dataset(
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"LeMaterial/leMat1",
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token=HF_TOKEN,
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split="train",
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columns=[
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"chemical_formula_descriptive",
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"total_magnetization",
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],
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).select(range(1000))
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display_columns = [
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"chemical_formula_descriptive",
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# Define the app layout
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layout = html.Div(
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[
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WindowBreakpoints(
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id="breakpoints",
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widthBreakpointThresholdsPx=[800, 1200],
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widthBreakpointNames=["sm", "md", "lg"],
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),
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html.H1(
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html.B("Interactive Crystal Viewer"),
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style={"textAlign": "center", "margin-top": "20px"},
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html.Div(
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[
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html.Div(
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[
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html.Div(
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"Search a material to display its structure and properties",
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style={"textAlign": "center"},
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),
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],
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id="structure-container",
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style={
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"width": "44%",
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"verticalAlign": "top",
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"boxShadow": "0px 4px 8px rgba(0, 0, 0, 0.1)",
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"borderRadius": "10px",
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"backgroundColor": "#f9f9f9",
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"padding": "20px",
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"textAlign": "center",
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"display": "flex",
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"justifyContent": "center",
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"alignItems": "center",
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},
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),
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html.Div(
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id="properties-container",
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style={
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"width": "55%",
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"paddingLeft": "4%",
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"verticalAlign": "top",
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"boxShadow": "0px 4px 8px rgba(0, 0, 0, 0.1)",
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"borderRadius": "10px",
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"backgroundColor": "#f9f9f9",
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"padding": "20px",
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"overflow": "auto",
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"maxHeight": "600px",
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"display": "flex",
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"justifyContent": "center",
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"wordWrap": "break-word",
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},
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children=[
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html.Div(
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"Properties will be displayed here",
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style={"textAlign": "center"},
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),
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],
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),
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],
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style={
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"marginTop": "20px",
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"display": "flex",
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"justifyContent": "space-between", # Ensure the two sections are responsive
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"flexWrap": "wrap",
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},
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),
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html.Div(
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[
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id="materials-input",
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),
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],
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id="materials-input-container",
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style={
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"width": "100%",
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},
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),
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],
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),
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],
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style={
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"width": "48%",
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"verticalAlign": "top",
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},
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),
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html.Div(
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[
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html.Label(
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"Select a row to display the material's structure and properties",
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style={"margin-bottom": "20px"},
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),
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# dcc.Dropdown(
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# id="material-dropdown",
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# options=[], # Empty options initially
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# value=None,
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# ),
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dash.dash_table.DataTable(
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id="table",
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columns=[
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(
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{"name": display_names[col], "id": col}
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if col != "energy"
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else {
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"name": display_names[col],
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"id": col,
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"type": "numeric",
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"format": {"specifier": ".2f"},
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}
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)
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for col in display_columns
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],
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data=[{}],
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style_cell={
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"fontFamily": "Arial",
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"padding": "10px",
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"border": "1px solid #ddd", # Subtle border for elegance
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"textAlign": "left",
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"fontSize": "14px",
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},
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style_header={
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"backgroundColor": "#f5f5f5", # Light grey header
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"fontWeight": "bold",
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"textAlign": "left",
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"borderBottom": "2px solid #ddd",
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},
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style_data={
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"backgroundColor": "#ffffff",
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"color": "#333333",
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"borderBottom": "1px solid #ddd",
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},
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style_data_conditional=[
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{
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"if": {"state": "active"},
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"backgroundColor": "#e6f7ff",
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"border": "1px solid #1890ff",
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},
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],
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style_table={
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"maxHeight": "400px",
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"overflowX": "auto",
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"overflowY": "auto",
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},
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style_as_list_view=True,
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row_selectable="single",
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selected_rows=[],
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),
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],
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style={
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"width": "48%",
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# "maxWidth": "800px",
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"margin": "0 auto",
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"padding": "20px",
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"backgroundColor": "#ffffff",
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"borderRadius": "10px",
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"boxShadow": "0px 4px 8px rgba(0, 0, 0, 0.1)",
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},
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),
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],
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style={
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"margin-top": "20px",
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"margin-bottom": "20px",
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"display": "flex",
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"flexDirection": "row",
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"alignItems": "center",
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},
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),
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# html.Button("Display Material", id="display-button", n_clicks=0),
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],
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],
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# Input("display-button", "n_clicks"),
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Input("table", "active_cell"),
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Input("table", "derived_virtual_selected_rows"),
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)
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def display_material(active_cell, selected_rows):
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if not active_cell and not selected_rows:
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return (
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html.Div(
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"Search a material to display its structure and properties",
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style={"textAlign": "center"},
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),
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html.Div(
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"Properties will be displayed here",
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style={"textAlign": "center"},
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),
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)
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if len(selected_rows) > 0:
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idx_active = selected_rows[0]
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else:
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idx_active = active_cell["row"]
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row = dataset[mapping_table_idx_dataset_idx[idx_active]]
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structure = Structure(
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"Crystal system": sga.get_crystal_system(),
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"International Spacegroup": sga.get_symmetry_dataset().international,
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"Magnetic moments (μB/f.u.)": row["magnetic_moments"],
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# "Stress tensor (kB)": row["stress_tensor"], # not available in LeMat1
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"Forces on atoms (eV/A)": row["forces"],
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"Bader charges (e-)": row["charges"],
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"DFT Functional": row["functional"],
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[
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html.Tbody(
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[
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html.Tr(
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[
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html.Th(
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key,
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style={
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"padding": "10px",
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"verticalAlign": "middle",
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},
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),
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html.Td(
|
| 409 |
+
str(value),
|
| 410 |
+
style={
|
| 411 |
+
"padding": "10px",
|
| 412 |
+
"borderBottom": "1px solid #ddd",
|
| 413 |
+
},
|
| 414 |
+
),
|
| 415 |
+
],
|
| 416 |
+
)
|
| 417 |
for key, value in properties.items()
|
| 418 |
+
],
|
| 419 |
)
|
| 420 |
],
|
| 421 |
style={
|
|
|
|
| 422 |
"width": "100%",
|
| 423 |
"borderCollapse": "collapse",
|
| 424 |
+
"fontFamily": "'Arial', sans-serif",
|
| 425 |
+
"fontSize": "14px",
|
| 426 |
+
"color": "#333333",
|
| 427 |
},
|
| 428 |
)
|
| 429 |
|
| 430 |
return structure_component.layout(), properties_html
|
| 431 |
|
| 432 |
|
| 433 |
+
@app.callback(
|
| 434 |
+
Output("materials-input-container", "children"),
|
| 435 |
+
Input("breakpoints", "widthBreakpoint"),
|
| 436 |
+
State("breakpoints", "width"),
|
| 437 |
+
)
|
| 438 |
+
def update_materials_input_layout(breakpoint_name, width):
|
| 439 |
+
if breakpoint_name in ["lg", "md"]:
|
| 440 |
+
# Default layout if no page size is detected
|
| 441 |
+
return dmp.MaterialsInput(
|
| 442 |
+
allowedInputTypes=["elements", "formula"],
|
| 443 |
+
hidePeriodicTable=False,
|
| 444 |
+
periodicTableMode="toggle",
|
| 445 |
+
hideWildcardButton=True,
|
| 446 |
+
showSubmitButton=True,
|
| 447 |
+
submitButtonText="Search",
|
| 448 |
+
type="elements",
|
| 449 |
+
id="materials-input",
|
| 450 |
+
)
|
| 451 |
+
elif breakpoint_name == "sm":
|
| 452 |
+
return dmp.MaterialsInput(
|
| 453 |
+
allowedInputTypes=["elements", "formula"],
|
| 454 |
+
hidePeriodicTable=True,
|
| 455 |
+
periodicTableMode="none",
|
| 456 |
+
hideWildcardButton=False,
|
| 457 |
+
showSubmitButton=False,
|
| 458 |
+
# submitButtonText="Search",
|
| 459 |
+
type="elements",
|
| 460 |
+
id="materials-input",
|
| 461 |
+
)
|
| 462 |
+
|
| 463 |
+
|
| 464 |
# Register crystal toolkit with the app
|
| 465 |
ctc.register_crystal_toolkit(app, layout)
|
| 466 |
|