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Browse files- requirements.txt +19 -131
requirements.txt
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biopython
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coloredlogs==15.0.1
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contourpy==1.3.2
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cooler==0.10.3
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cycler==0.12.1
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cytoolz==1.0.1
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cyvcf2==0.31.1
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decorator==5.2.1
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deepTools==3.5.6
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deeptoolsintervals==0.1.9
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dill==0.4.0
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dm-tree==0.1.9
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docutils==0.21.2
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filelock @ file:///home/conda/feedstock_root/build_artifacts/filelock_1741969488311/work
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flatbuffers==25.2.10
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fonttools==4.58.0
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fsspec @ file:///home/conda/feedstock_root/build_artifacts/fsspec_1748101524683/work
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future==1.0.0
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gast==0.6.0
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gff2bed==1.0.3
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gffutils==0.13
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google-auth==2.40.2
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google-auth-oauthlib==1.0.0
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google-pasta==0.2.0
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grpcio==1.71.0
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gtracks==1.12.6
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h2 @ file:///home/conda/feedstock_root/build_artifacts/h2_1738578511449/work
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h5py==3.13.0
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HiCMatrix==17.2
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hpack @ file:///home/conda/feedstock_root/build_artifacts/hpack_1737618293087/work
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huggingface_hub @ file:///home/conda/feedstock_root/build_artifacts/huggingface_hub_1747670838042/work
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humanfriendly==10.0
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hyperframe @ file:///home/conda/feedstock_root/build_artifacts/hyperframe_1737618333194/work
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idna @ file:///home/conda/feedstock_root/build_artifacts/idna_1733211830134/work
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imagesize==1.4.1
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iniconfig==2.1.0
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intervaltree==3.1.0
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Jinja2==3.1.6
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keras==2.14.0
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kiwisolver==1.4.8
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libclang==18.1.1
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Markdown==3.8
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MarkupSafe==3.0.2
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matplotlib==3.8.4
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ml-dtypes==0.2.0
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msgpack==1.1.0
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multiprocess==0.70.18
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ndindex==1.10.0
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numexpr==2.10.2
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numpy==2.2.6
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numpydoc==1.8.0
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oauthlib==3.2.2
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opt_einsum==3.4.0
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packaging @ file:///home/conda/feedstock_root/build_artifacts/bld/rattler-build_packaging_1745345660/work
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pandas==1.5.2
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parasail==1.3.4
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pillow==11.2.1
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platformdirs==4.3.8
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plotly==5.18.0
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pluggy==1.6.0
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protobuf==3.20.3
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py-cpuinfo==9.0.0
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py2bit==0.3.3
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pyasn1==0.6.1
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pyasn1_modules==0.4.2
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pybedtools==0.12.0
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pyBigWig==0.3.24
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pycparser @ file:///home/conda/feedstock_root/build_artifacts/bld/rattler-build_pycparser_1733195786/work
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pyfaidx==0.8.1.4
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pyGenomeTracks==3.9
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Pygments==2.19.1
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pyparsing==3.2.3
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pysam==0.23.0
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PySocks @ file:///home/conda/feedstock_root/build_artifacts/pysocks_1733217236728/work
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pytest==8.3.5
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python-dateutil==2.9.0.post0
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pytz==2025.2
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PyYAML @ file:///home/conda/feedstock_root/build_artifacts/pyyaml_1737454678094/work
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requests @ file:///home/conda/feedstock_root/build_artifacts/requests_1733217035951/work
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requests-oauthlib==2.0.0
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roman-numerals-py==3.1.0
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rsa==4.9.1
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scipy==1.15.3
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seaborn==0.13.2
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simplejson==3.20.1
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six==1.17.0
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snowballstemmer==3.0.1
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sortedcontainers==2.4.0
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Sphinx==8.2.3
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sphinxcontrib-applehelp==2.0.0
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sphinxcontrib-devhelp==2.0.0
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sphinxcontrib-htmlhelp==2.1.0
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sphinxcontrib-jsmath==1.0.1
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sphinxcontrib-qthelp==2.0.0
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sphinxcontrib-serializinghtml==2.0.0
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tables==3.10.2
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tabulate==0.9.0
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tenacity==9.1.2
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tensorboard==2.14.1
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tensorboard-data-server==0.7.2
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tensorflow==2.14.0
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tensorflow-estimator==2.14.0
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tensorflow-io-gcs-filesystem==0.37.1
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tensorflow-macos==2.14.0
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tensorflow-probability==0.19.0
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termcolor==3.1.0
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toolz==1.0.0
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tqdm @ file:///home/conda/feedstock_root/build_artifacts/tqdm_1735661334605/work
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typing_extensions @ file:///home/conda/feedstock_root/build_artifacts/bld/rattler-build_typing_extensions_1744302253/work
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urllib3 @ file:///home/conda/feedstock_root/build_artifacts/urllib3_1744323578849/work
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Werkzeug==3.1.3
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wrapt==1.14.1
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zstandard @ file:///private/var/folders/k1/30mswbxs7r1g6zwn8y4fyt500000gp/T/abs_a5_i6g4o6n/croot/zstandard_1731356352787/work
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# protobuf==3.20.3
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# biopython==1.80
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# pandas==1.5.2
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# tensorflow==2.14.0
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# tensorflow-probability==0.19.0
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# plotly==5.18.0
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numpy
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protobuf
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biopython
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pandas
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tensorflow
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tensorflow-probability
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plotly
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tabulate
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h5py
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cyvcf2
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parasail
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gtracks
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pyGenomeTracks
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