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Commit ·
e223904
1
Parent(s): 287a5ea
update website with better UI
Browse files- data/desktop.ini +2 -0
- data/jcvi_csv_to_fasta.py +14 -0
data/desktop.ini
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[LocalizedFileNames]
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jcvi_syn30_unknown_gene_hits.csv=@jcvi_syn30_unknown_gene_hits.csv,0
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data/jcvi_csv_to_fasta.py
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import pandas as pd
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df = pd.read_csv("data/jcvi_full_unknown_gene.csv")
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# Columns in this file include the query id and the query amino-acid sequence
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# (names may vary slightly; inspect df.columns if needed)
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query_id_col = "Locus tag (accession CP002027). "
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seq_col = "Amino acid sequence. RNA's are labeled xrna."
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queries = df[[query_id_col, seq_col]].drop_duplicates()
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with open("jcvi_full_unknown_genes.fasta", "w") as f:
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for qid, seq in queries.itertuples(index=False):
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f.write(f">{qid}\n{seq}\n")
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