docs: add CLEAN setup details and Docker/Apptainer usage ab34d07 ronboger Claude Opus 4.5 commited on 4 days ago
docs: add Protein-Vec model weights Zenodo link with wget commands 0d63974 ronboger Claude Opus 4.5 commited on 4 days ago
chore: clean up redundant scripts and consolidate thresholds dd5ecfc ronboger Claude Opus 4.5 commited on 4 days ago
docs: add test example using included JCVI Syn3.0 data 73421ff ronboger Claude Opus 4.5 commited on 4 days ago
fix: use actual computed FNR thresholds in docs 11112f0 ronboger Claude Opus 4.5 commited on 4 days ago
refactor: consolidate CLI to single 'cpr search' command aae26ca ronboger Claude Opus 4.5 commited on 4 days ago
docs: comprehensive GETTING_STARTED.md update b6ba05f ronboger Claude Opus 4.5 commited on 4 days ago
perf: optimize FDR computation and add DALI documentation 9f07ba7 ronboger Claude Opus 4.5 commited on 4 days ago
feat: add one-step cpr find command and FDR-level search 7453ae1 ronboger Claude Opus 4.5 commited on 5 days ago
