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Update main.py
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main.py
CHANGED
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@@ -6,6 +6,8 @@ import numpy as np
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from tensorflow.keras.models import load_model
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from werkzeug.utils import secure_filename
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import tempfile
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# Load the Brain Tumor CNN Model
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braintumor_model = load_model('models/braintumor.h5')
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@@ -18,6 +20,11 @@ app.secret_key = "nielitchandigarhpunjabpolice" # Secret key for session manage
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# Allowed image file extensions
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ALLOWED_EXTENSIONS = set(['png', 'jpg', 'jpeg'])
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def allowed_file(filename):
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"""Check if the file is a valid image format (png, jpg, jpeg)."""
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return '.' in filename and filename.rsplit('.', 1)[1] in ALLOWED_EXTENSIONS
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@@ -36,90 +43,100 @@ def preprocess_imgs(set_name, img_size):
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def crop_imgs(set_name, add_pixels_value=0):
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"""
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Crop the region of interest (ROI) in the image for brain tumor detection.
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This method finds contours in the image, then crops the detected tumor region.
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"""
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set_new = []
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for img in set_name:
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# Convert to grayscale and apply Gaussian blur
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gray = cv2.cvtColor(img, cv2.COLOR_RGB2GRAY)
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gray = cv2.GaussianBlur(gray, (5, 5), 0)
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# Threshold the image and find contours
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thresh = cv2.threshold(gray, 45, 255, cv2.THRESH_BINARY)[1]
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thresh = cv2.erode(thresh, None, iterations=2)
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thresh = cv2.dilate(thresh, None, iterations=2)
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# Find the largest contour and crop the image around it
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cnts = cv2.findContours(thresh.copy(), cv2.RETR_EXTERNAL, cv2.CHAIN_APPROX_SIMPLE)
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cnts = imutils.grab_contours(cnts)
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c = max(cnts, key=cv2.contourArea)
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# Get the extreme points (left, right, top, bottom) of the contour for cropping
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extLeft = tuple(c[c[:, :, 0].argmin()][0])
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extRight = tuple(c[c[:, :, 0].argmax()][0])
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extTop = tuple(c[c[:, :, 1].argmin()][0])
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extBot = tuple(c[c[:, :, 1].argmax()][0])
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# Add some extra pixels around the contour to ensure the full tumor is captured
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ADD_PIXELS = add_pixels_value
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new_img = img[extTop[1]-ADD_PIXELS:extBot[1]+ADD_PIXELS,
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extLeft[0]-ADD_PIXELS:extRight[0]+ADD_PIXELS].copy()
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set_new.append(new_img)
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return np.array(set_new)
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@app.route('/')
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def brain_tumor():
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"""
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The main page that renders the HTML form for the user to upload an image
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and input their details.
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"""
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return render_template('braintumor.html')
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@app.route('/resultbt', methods=['POST'])
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def resultbt():
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"""
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The result page that processes the uploaded image, makes predictions using
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the trained brain tumor detection model, and displays the result.
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"""
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if request.method == 'POST':
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# Get user input from the form (name, email, phone, etc.)
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firstname = request.form['firstname']
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lastname = request.form['lastname']
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email = request.form['email']
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phone = request.form['phone']
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gender = request.form['gender']
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age = request.form['age']
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file = request.files['file']
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if file and allowed_file(file.filename):
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# Use tempfile to create a temporary file path for the uploaded image
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temp_file = tempfile.NamedTemporaryFile(delete=False)
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filename = secure_filename(file.filename)
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file.save(temp_file.name)
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flash('Image successfully uploaded and displayed below')
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#
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img = cv2.imread(temp_file.name)
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img = crop_imgs([img])
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img = img.reshape(img.shape[1:])
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img = preprocess_imgs([img], (224, 224))
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pred = braintumor_model.predict(img)
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if pred
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else:
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# If the file is not valid, show an error message
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flash('Allowed image types are - png, jpg, jpeg')
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return redirect(request.url)
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if __name__ == '__main__':
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# Run the app in debug mode for development purposes
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app.run(debug=True)
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from tensorflow.keras.models import load_model
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from werkzeug.utils import secure_filename
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import tempfile
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from pymongo import MongoClient
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from datetime import datetime
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# Load the Brain Tumor CNN Model
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braintumor_model = load_model('models/braintumor.h5')
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# Allowed image file extensions
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ALLOWED_EXTENSIONS = set(['png', 'jpg', 'jpeg'])
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# Connect to MongoDB Atlas
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client = MongoClient("mongodb+srv://test:test@cluster0.sxci1.mongodb.net/?retryWrites=true&w=majority")
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db = client['brain_tumor_detection'] # Database name
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collection = db['predictions'] # Collection name
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def allowed_file(filename):
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"""Check if the file is a valid image format (png, jpg, jpeg)."""
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return '.' in filename and filename.rsplit('.', 1)[1] in ALLOWED_EXTENSIONS
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def crop_imgs(set_name, add_pixels_value=0):
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"""
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Crop the region of interest (ROI) in the image for brain tumor detection.
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"""
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set_new = []
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for img in set_name:
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gray = cv2.cvtColor(img, cv2.COLOR_RGB2GRAY)
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gray = cv2.GaussianBlur(gray, (5, 5), 0)
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thresh = cv2.threshold(gray, 45, 255, cv2.THRESH_BINARY)[1]
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thresh = cv2.erode(thresh, None, iterations=2)
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thresh = cv2.dilate(thresh, None, iterations=2)
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cnts = cv2.findContours(thresh.copy(), cv2.RETR_EXTERNAL, cv2.CHAIN_APPROX_SIMPLE)
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cnts = imutils.grab_contours(cnts)
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c = max(cnts, key=cv2.contourArea)
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extLeft = tuple(c[c[:, :, 0].argmin()][0])
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extRight = tuple(c[c[:, :, 0].argmax()][0])
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extTop = tuple(c[c[:, :, 1].argmin()][0])
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extBot = tuple(c[c[:, :, 1].argmax()][0])
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ADD_PIXELS = add_pixels_value
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new_img = img[extTop[1]-ADD_PIXELS:extBot[1]+ADD_PIXELS,
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extLeft[0]-ADD_PIXELS:extRight[0]+ADD_PIXELS].copy()
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set_new.append(new_img)
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return np.array(set_new)
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@app.route('/')
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def brain_tumor():
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"""Render the HTML form for the user to upload an image."""
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return render_template('braintumor.html')
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@app.route('/resultbt', methods=['POST'])
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def resultbt():
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"""Process the uploaded image and save prediction results to MongoDB."""
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if request.method == 'POST':
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firstname = request.form['firstname']
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lastname = request.form['lastname']
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email = request.form['email']
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phone = request.form['phone']
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gender = request.form['gender']
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age = request.form['age']
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file = request.files['file']
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if file and allowed_file(file.filename):
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temp_file = tempfile.NamedTemporaryFile(delete=False)
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filename = secure_filename(file.filename)
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file.save(temp_file.name)
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flash('Image successfully uploaded and displayed below')
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# Process the image
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img = cv2.imread(temp_file.name)
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img = crop_imgs([img])
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img = img.reshape(img.shape[1:])
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img = preprocess_imgs([img], (224, 224))
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# Make prediction
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pred = braintumor_model.predict(img)
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prediction = 'Tumor Detected' if pred[0][0] >= 0.5 else 'No Tumor Detected'
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confidence_score = float(pred[0][0])
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# Prepare data for MongoDB
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result = {
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"firstname": firstname,
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"lastname": lastname,
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"email": email,
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"phone": phone,
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"gender": gender,
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"age": age,
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"image_name": filename,
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"prediction": prediction,
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"confidence_score": confidence_score,
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"timestamp": datetime.utcnow()
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}
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# Insert data into MongoDB
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collection.insert_one(result)
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# Return the result to the user
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return render_template('resultbt.html', filename=filename, fn=firstname, ln=lastname, age=age, r=prediction, gender=gender)
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else:
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flash('Allowed image types are - png, jpg, jpeg')
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return redirect(request.url)
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@app.route('/dbresults')
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def dbresults():
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"""Fetch all results from MongoDB and render them in a template."""
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# Fetch all documents from the MongoDB collection
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all_results = collection.find() # Returns a cursor
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# Convert cursor to a list of dictionaries
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results_list = []
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for result in all_results:
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result['_id'] = str(result['_id']) # Convert ObjectId to string for JSON serialization
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results_list.append(result)
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# Pass the results to the HTML template
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return render_template('dbresults.html', results=results_list)
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if __name__ == '__main__':
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app.run(debug=True)
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