DeepBoner / src /app.py
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fix: P0 provider mismatch and code quality audit fixes (#102)
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"Gradio UI for DeepBoner agent with MCP server support."
import os
from collections.abc import AsyncGenerator
from typing import Any, Literal
import gradio as gr
from pydantic_ai.models.anthropic import AnthropicModel
from pydantic_ai.models.openai import OpenAIChatModel
from pydantic_ai.providers.anthropic import AnthropicProvider
from pydantic_ai.providers.openai import OpenAIProvider
from src.agent_factory.judges import HFInferenceJudgeHandler, JudgeHandler, MockJudgeHandler
from src.config.domain import ResearchDomain
from src.orchestrators import create_orchestrator
from src.tools.clinicaltrials import ClinicalTrialsTool
from src.tools.europepmc import EuropePMCTool
from src.tools.openalex import OpenAlexTool
from src.tools.pubmed import PubMedTool
from src.tools.search_handler import SearchHandler
from src.utils.config import settings
from src.utils.exceptions import ConfigurationError
from src.utils.models import OrchestratorConfig
OrchestratorMode = Literal["simple", "magentic", "advanced", "hierarchical"]
# CSS to force dark mode on API key input
# NOTE: Browser autofill requires -webkit-autofill selectors to override
CUSTOM_CSS = """
.api-key-input input {
background-color: #1f2937 !important;
color: white !important;
border-color: #374151 !important;
}
.api-key-input input:focus,
.api-key-input input:focus-visible {
background-color: #1f2937 !important;
color: white !important;
border-color: #e879f9 !important;
outline: none !important;
}
/* Override aggressive browser autofill styling */
.api-key-input input:-webkit-autofill,
.api-key-input input:-webkit-autofill:hover,
.api-key-input input:-webkit-autofill:focus {
-webkit-box-shadow: 0 0 0px 1000px #1f2937 inset !important;
-webkit-text-fill-color: white !important;
caret-color: white !important;
transition: background-color 5000s ease-in-out 0s;
}
"""
def configure_orchestrator(
use_mock: bool = False,
mode: OrchestratorMode = "simple",
user_api_key: str | None = None,
domain: str | ResearchDomain | None = None,
) -> tuple[Any, str]:
"""
Create an orchestrator instance.
Args:
use_mock: If True, use MockJudgeHandler (no API key needed)
mode: Orchestrator mode ("simple" or "advanced")
user_api_key: Optional user-provided API key (BYOK) - auto-detects provider
domain: Research domain (defaults to "sexual_health")
Returns:
Tuple of (Orchestrator instance, backend_name)
"""
# Create orchestrator config
config = OrchestratorConfig(
max_iterations=10,
max_results_per_tool=10,
)
# Create search tools
search_handler = SearchHandler(
tools=[PubMedTool(), ClinicalTrialsTool(), EuropePMCTool(), OpenAlexTool()],
timeout=config.search_timeout,
)
# Create judge (mock, real, or free tier)
judge_handler: JudgeHandler | MockJudgeHandler | HFInferenceJudgeHandler
backend_info = "Unknown"
# 1. Forced Mock (Unit Testing)
if use_mock:
judge_handler = MockJudgeHandler(domain=domain)
backend_info = "Mock (Testing)"
# 2. Paid API Key (User provided or Env)
elif user_api_key and user_api_key.strip():
# Auto-detect provider from key prefix
model: AnthropicModel | OpenAIChatModel
if user_api_key.startswith("sk-ant-"):
# Anthropic key
anthropic_provider = AnthropicProvider(api_key=user_api_key)
model = AnthropicModel(settings.anthropic_model, provider=anthropic_provider)
backend_info = "Paid API (Anthropic)"
elif user_api_key.startswith("sk-"):
# OpenAI key
openai_provider = OpenAIProvider(api_key=user_api_key)
model = OpenAIChatModel(settings.openai_model, provider=openai_provider)
backend_info = "Paid API (OpenAI)"
else:
raise ConfigurationError(
"Invalid API key format. Expected sk-... (OpenAI) or sk-ant-... (Anthropic)"
)
judge_handler = JudgeHandler(model=model, domain=domain)
# 3. Environment API Keys (fallback)
elif settings.has_openai_key:
judge_handler = JudgeHandler(model=None, domain=domain) # Uses env key
backend_info = "Paid API (OpenAI from env)"
elif settings.has_anthropic_key:
judge_handler = JudgeHandler(model=None, domain=domain) # Uses env key
backend_info = "Paid API (Anthropic from env)"
# 4. Free Tier (HuggingFace Inference)
else:
judge_handler = HFInferenceJudgeHandler(domain=domain)
backend_info = "Free Tier (Llama 3.1 / Mistral)"
orchestrator = create_orchestrator(
search_handler=search_handler,
judge_handler=judge_handler,
config=config,
mode=mode,
api_key=user_api_key,
domain=domain,
)
return orchestrator, backend_info
async def research_agent(
message: str,
history: list[dict[str, Any]],
mode: str = "simple", # Gradio passes strings; validated below
domain: str = "sexual_health",
api_key: str = "",
api_key_state: str = "",
) -> AsyncGenerator[str, None]:
"""
Gradio chat function that runs the research agent.
Args:
message: User's research question
history: Chat history (Gradio format)
mode: Orchestrator mode ("simple" or "advanced")
domain: Research domain
api_key: Optional user-provided API key (BYOK - auto-detects provider)
api_key_state: Persistent API key state (survives example clicks)
Yields:
Markdown-formatted responses for streaming
"""
if not message.strip():
yield "Please enter a research question."
return
# BUG FIX: Handle None values from Gradio example caching
# Gradio passes None for missing example columns, overriding defaults
api_key_str = api_key or ""
api_key_state_str = api_key_state or ""
domain_str = domain or "sexual_health"
# Validate and cast mode to proper type
valid_modes: set[str] = {"simple", "magentic", "advanced", "hierarchical"}
mode_validated: OrchestratorMode = mode if mode in valid_modes else "simple" # type: ignore[assignment]
# BUG FIX: Prefer freshly-entered key, then persisted state
user_api_key = (api_key_str.strip() or api_key_state_str.strip()) or None
# Check available keys
has_openai = settings.has_openai_key
has_anthropic = settings.has_anthropic_key
# Check for OpenAI user key
is_openai_user_key = (
user_api_key and user_api_key.startswith("sk-") and not user_api_key.startswith("sk-ant-")
)
has_paid_key = has_openai or has_anthropic or bool(user_api_key)
# Advanced mode requires OpenAI specifically (due to agent-framework binding)
if mode_validated == "advanced" and not (has_openai or is_openai_user_key):
yield (
"⚠️ **Warning**: Advanced mode currently requires OpenAI API key. "
"Anthropic keys only work in Simple mode. Falling back to Simple.\n\n"
)
mode_validated = "simple"
# Inform user about fallback if no keys
if not has_paid_key:
# No paid keys - will use FREE HuggingFace Inference
yield (
"πŸ€— **Free Tier**: Using HuggingFace Inference (Llama 3.1 / Mistral) for AI analysis.\n"
"For premium models, enter an OpenAI or Anthropic API key below.\n\n"
)
# Run the agent and stream events
response_parts: list[str] = []
streaming_buffer = "" # Buffer for accumulating streaming tokens
try:
# use_mock=False - let configure_orchestrator decide based on available keys
# It will use: Paid API > HF Inference (free tier)
orchestrator, backend_name = configure_orchestrator(
use_mock=False, # Never use mock in production - HF Inference is the free fallback
mode=mode_validated,
user_api_key=user_api_key,
domain=domain_str,
)
# Immediate backend info + loading feedback so user knows something is happening
# Use replace to get "Sexual Health" instead of "Sexual_Health" from .title()
domain_display = domain_str.replace("_", " ").title()
yield (
f"🧠 **Backend**: {backend_name} | **Domain**: {domain_display}\n\n"
"⏳ **Processing...** Searching PubMed, ClinicalTrials.gov, Europe PMC, OpenAlex...\n"
)
async for event in orchestrator.run(message):
# BUG FIX: Handle streaming events separately to avoid token-by-token spam
if event.type == "streaming":
# Accumulate streaming tokens without emitting individual events
streaming_buffer += event.message
# Yield the current buffer combined with previous parts to show progress
# But DO NOT append to response_parts list yet (to avoid O(N^2) list growth)
current_parts = [*response_parts, f"πŸ“‘ **STREAMING**: {streaming_buffer}"]
yield "\n\n".join(current_parts)
continue
# For non-streaming events, flush any buffered streaming content first
if streaming_buffer:
response_parts.append(f"πŸ“‘ **STREAMING**: {streaming_buffer}")
streaming_buffer = "" # Reset buffer
# Handle complete events specially
if event.type == "complete":
response_parts.append(event.message)
yield "\n\n".join(response_parts)
else:
# Format and append non-streaming events
event_md = event.to_markdown()
response_parts.append(event_md)
# Show progress
yield "\n\n".join(response_parts)
# Flush any remaining streaming content at the end
if streaming_buffer:
response_parts.append(f"πŸ“‘ **STREAMING**: {streaming_buffer}")
yield "\n\n".join(response_parts)
except Exception as e:
yield f"❌ **Error**: {e!s}"
def create_demo() -> tuple[gr.ChatInterface, gr.Accordion]:
"""
Create the Gradio demo interface with MCP support.
Returns:
Configured Gradio Blocks interface with MCP server enabled
"""
additional_inputs_accordion = gr.Accordion(
label="βš™οΈ Mode & API Key (Free tier works!)", open=False
)
# BUG FIX: Add gr.State for API key persistence across example clicks
api_key_state = gr.State("")
# 1. Unwrapped ChatInterface (Fixes Accordion Bug)
# NOTE: Using inline styles on each element because HR breaks text-align inheritance
description = (
"<div style='text-align: center;'>"
"<em>AI-Powered Research Agent β€” searches PubMed, "
"ClinicalTrials.gov, Europe PMC & OpenAlex</em><br><br>"
"Deep research for sexual wellness, ED treatments, hormone therapy, "
"libido, and reproductive health - for all genders."
"</div>"
"<hr style='margin: 1em auto; width: 80%; border: none; "
"border-top: 1px solid #374151;'>"
"<div style='text-align: center;'>"
"<em>Research tool only β€” not for medical advice.</em><br>"
"<strong>MCP Server Active</strong>: Connect Claude Desktop to "
"<code>/gradio_api/mcp/</code>"
"</div>"
)
demo = gr.ChatInterface(
fn=research_agent,
title="πŸ† DeepBoner",
description=description,
examples=[
[
"What drugs improve female libido post-menopause?",
"simple",
"sexual_health",
None,
None,
],
[
"Testosterone therapy for hypoactive sexual desire disorder?",
"simple",
"sexual_health",
None,
None,
],
[
"Clinical trials for PDE5 inhibitors alternatives?",
"advanced",
"sexual_health",
None,
None,
],
],
additional_inputs_accordion=additional_inputs_accordion,
additional_inputs=[
gr.Radio(
choices=["simple", "advanced"],
value="simple",
label="Orchestrator Mode",
info="⚑ Simple: Free/Any | πŸ”¬ Advanced: OpenAI (Deep Research)",
),
gr.Dropdown(
choices=[d.value for d in ResearchDomain],
value="sexual_health",
label="Research Domain",
info="DeepBoner specializes in sexual health research",
visible=False, # Hidden - only sexual_health supported
),
gr.Textbox(
label="πŸ”‘ API Key (Optional)",
placeholder="sk-... (OpenAI) or sk-ant-... (Anthropic)",
type="password",
info="Leave empty for free tier. Auto-detects provider from key prefix.",
elem_classes=["api-key-input"],
),
api_key_state, # Hidden state component for persistence
],
)
return demo, additional_inputs_accordion
def main() -> None:
"""Run the Gradio app with MCP server enabled."""
demo, _ = create_demo()
demo.launch(
server_name=os.getenv("GRADIO_SERVER_NAME", "0.0.0.0"), # nosec B104
server_port=7860,
share=False,
mcp_server=True,
ssr_mode=False, # Fix for intermittent loading/hydration issues in HF Spaces
css=CUSTOM_CSS, # Moved here for Gradio 6.0 support
)
if __name__ == "__main__":
main()