Upload 3 files
Browse files- README (1).md +12 -0
- app (2).py +457 -0
- requirements (1).txt +9 -0
README (1).md
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---
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title: Motivational Interviewing Gemini
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emoji: 😻
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colorFrom: blue
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colorTo: yellow
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sdk: streamlit
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sdk_version: 1.41.1
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app_file: app.py
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pinned: false
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---
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Check out the configuration reference at https://huggingface.co/docs/hub/spaces-config-reference
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app (2).py
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| 1 |
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import streamlit as st
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| 2 |
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import pandas as pd
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| 3 |
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import google.generativeai as genai
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import whisper
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| 5 |
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import torch
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| 6 |
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import re
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| 7 |
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import numpy as np
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| 8 |
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import tempfile
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| 9 |
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import os
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| 10 |
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import json
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| 11 |
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from pathlib import Path
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| 12 |
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from moviepy import VideoFileClip
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| 13 |
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from pyannote.audio import Pipeline
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| 14 |
+
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| 15 |
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# Ensure necessary imports are included
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| 16 |
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import time
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| 17 |
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import ffmpeg
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| 18 |
+
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| 19 |
+
# MediaProcessor class handles media processing (transcription and diarization)
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| 20 |
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class MediaProcessor:
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| 21 |
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def __init__(self, auth_token: str):
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| 22 |
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"""
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| 23 |
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Initialize with HuggingFace auth token for speaker diarization
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| 24 |
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"""
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| 25 |
+
# Load Whisper model
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| 26 |
+
self.whisper_model = whisper.load_model("medium")
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| 27 |
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# Initialize PyAnnote speaker diarization pipeline
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| 28 |
+
self.diarization_pipeline = Pipeline.from_pretrained(
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| 29 |
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"pyannote/speaker-diarization-3.0",
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| 30 |
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use_auth_token=auth_token
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| 31 |
+
)
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| 32 |
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self.supported_formats = {
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| 33 |
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'audio': ['.mp3', '.wav', '.m4a', '.ogg', '.flac'],
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| 34 |
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'video': ['.mp4', '.avi', '.mov', '.mkv', '.webm']
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| 35 |
+
}
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| 36 |
+
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| 37 |
+
def process_media(self, file, progress_bar=None) -> pd.DataFrame:
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| 38 |
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"""Process audio or video file and return transcript DataFrame"""
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| 39 |
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file_ext = Path(file.name).suffix.lower()
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| 40 |
+
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| 41 |
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with tempfile.TemporaryDirectory() as temp_dir:
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| 42 |
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temp_path = Path(temp_dir) / file.name
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| 43 |
+
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| 44 |
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# Save uploaded file
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| 45 |
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with open(temp_path, 'wb') as f:
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| 46 |
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f.write(file.getvalue())
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| 47 |
+
|
| 48 |
+
# Convert video to audio if necessary
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| 49 |
+
if file_ext in self.supported_formats['video']:
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| 50 |
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audio_path = self._extract_audio_from_video(temp_path)
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| 51 |
+
else:
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| 52 |
+
audio_path = temp_path
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| 53 |
+
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| 54 |
+
# Process audio
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| 55 |
+
return self._process_audio_file(audio_path, progress_bar)
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| 56 |
+
|
| 57 |
+
def _extract_audio_from_video(self, video_path: Path) -> Path:
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| 58 |
+
"""Extract audio from video file"""
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| 59 |
+
audio_path = video_path.with_suffix('.wav')
|
| 60 |
+
video = VideoFileClip(str(video_path))
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| 61 |
+
video.audio.write_audiofile(str(audio_path))
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| 62 |
+
video.close()
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| 63 |
+
return audio_path
|
| 64 |
+
|
| 65 |
+
def _process_audio_file(self, audio_path: Path, progress_bar) -> pd.DataFrame:
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| 66 |
+
"""
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| 67 |
+
Process audio file with transcription and diarization
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| 68 |
+
Returns DataFrame with speaker-separated transcript
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| 69 |
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"""
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| 70 |
+
if progress_bar:
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| 71 |
+
progress_bar.progress(0.1)
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| 72 |
+
progress_bar.text("Transcribing audio...")
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| 73 |
+
|
| 74 |
+
# Transcribe audio using Whisper
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| 75 |
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transcription = self.whisper_model.transcribe(str(audio_path))
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| 76 |
+
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| 77 |
+
if progress_bar:
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| 78 |
+
progress_bar.progress(0.5)
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| 79 |
+
progress_bar.text("Performing speaker diarization...")
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| 80 |
+
|
| 81 |
+
# Perform speaker diarization
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| 82 |
+
diarization = self.diarization_pipeline(str(audio_path))
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| 83 |
+
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| 84 |
+
if progress_bar:
|
| 85 |
+
progress_bar.progress(0.8)
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| 86 |
+
progress_bar.text("Aligning transcription with speakers...")
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| 87 |
+
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| 88 |
+
# Align transcription with speaker segments
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| 89 |
+
transcript_data = self._align_transcript_with_speakers(
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| 90 |
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transcription, diarization
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| 91 |
+
)
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| 92 |
+
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| 93 |
+
if progress_bar:
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| 94 |
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progress_bar.progress(1.0)
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| 95 |
+
progress_bar.text("Processing complete!")
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| 96 |
+
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| 97 |
+
return pd.DataFrame(transcript_data)
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| 98 |
+
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| 99 |
+
def _align_transcript_with_speakers(self, transcription, diarization):
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| 100 |
+
"""
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| 101 |
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Align transcription with speaker segments
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| 102 |
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Returns list of dicts with aligned data
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| 103 |
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"""
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| 104 |
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# Prepare a list to hold the aligned segments
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| 105 |
+
segments = []
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| 106 |
+
# Iterate over diarization segments
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| 107 |
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for segment in diarization.itersegments():
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| 108 |
+
speaker = diarization[segment]
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| 109 |
+
# Find corresponding text from transcription
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| 110 |
+
text = self._find_text_in_timerange(
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| 111 |
+
transcription['segments'],
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| 112 |
+
segment.start,
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| 113 |
+
segment.end
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| 114 |
+
)
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| 115 |
+
if text:
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| 116 |
+
segments.append({
|
| 117 |
+
'P or C': 'P' if speaker == 'SPEAKER_00' else 'C',
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| 118 |
+
'Content of Utterance': text,
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| 119 |
+
'Start Time': segment.start,
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| 120 |
+
'End Time': segment.end,
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| 121 |
+
'Speaker': speaker
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| 122 |
+
})
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| 123 |
+
return segments
|
| 124 |
+
|
| 125 |
+
@staticmethod
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| 126 |
+
def _find_text_in_timerange(segments, start_time, end_time):
|
| 127 |
+
"""Find transcribed text within a time range"""
|
| 128 |
+
relevant_segments = [
|
| 129 |
+
seg['text'] for seg in segments
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| 130 |
+
if (seg['start'] >= start_time and seg['end'] <= end_time)
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| 131 |
+
]
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| 132 |
+
return ' '.join(relevant_segments).strip()
|
| 133 |
+
|
| 134 |
+
# MITIAnalyzer class handles analysis and scoring using Google Gemini API
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| 135 |
+
class MITIAnalyzer:
|
| 136 |
+
def __init__(self, api_key):
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| 137 |
+
# Set the API key for Google Gemini
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| 138 |
+
genai.configure(api_key=api_key)
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| 139 |
+
self.global_scores = {
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| 140 |
+
"cultivating_change": None,
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| 141 |
+
"softening_sustain-talk": None,
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| 142 |
+
"partnership": None,
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| 143 |
+
"empathy": None
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| 144 |
+
}
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| 145 |
+
self.behavior_counts = {
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| 146 |
+
"gi": 0, # Giving Information
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| 147 |
+
"persuade": 0,
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| 148 |
+
"persuade_with": 0, # Persuade with Permission
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| 149 |
+
"question": 0,
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| 150 |
+
"sr": 0, # Simple Reflection
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| 151 |
+
"cr": 0, # Complex Reflection
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| 152 |
+
"affirm": 0,
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| 153 |
+
"seek": 0, # Seeking Collaboration
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| 154 |
+
"emphasize": 0, # Emphasizing Autonomy
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| 155 |
+
"confront": 0
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| 156 |
+
}
|
| 157 |
+
|
| 158 |
+
def extract_score(self, response_text):
|
| 159 |
+
"""Extract numerical score from Gemini API response"""
|
| 160 |
+
# Look for patterns like "Score: X" or "I would rate this as X"
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| 161 |
+
score_patterns = [
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| 162 |
+
r"score.*?([1-5])",
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| 163 |
+
r"rate.*?([1-5])",
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| 164 |
+
r"([1-5]).*?out of 5"
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| 165 |
+
]
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| 166 |
+
|
| 167 |
+
for pattern in score_patterns:
|
| 168 |
+
match = re.search(pattern, response_text.lower())
|
| 169 |
+
if match:
|
| 170 |
+
return int(match.group(1))
|
| 171 |
+
return None
|
| 172 |
+
|
| 173 |
+
def analyze_transcript(self, transcript_df):
|
| 174 |
+
"""Analyze transcript and generate all MITI scores"""
|
| 175 |
+
# Analyze global scores
|
| 176 |
+
model = genai.GenerativeModel('gemini-1.5-flash')
|
| 177 |
+
generation_config = genai.GenerationConfig(max_output_tokens=2048)
|
| 178 |
+
for dimension in self.global_scores.keys():
|
| 179 |
+
prompt = self.load_prompt(f"prompts/prompts/0{list(self.global_scores.keys()).index(dimension)+1}-MITI-global-{dimension.replace('_', '-')}.md")
|
| 180 |
+
|
| 181 |
+
full_prompt = f"{prompt}\n\n<transcript>\n{transcript_df.to_csv(index=False)}\n</transcript>"
|
| 182 |
+
|
| 183 |
+
response = model.generate_content(
|
| 184 |
+
full_prompt,
|
| 185 |
+
generation_config=generation_config
|
| 186 |
+
)
|
| 187 |
+
score = self.extract_score(response.text)
|
| 188 |
+
self.global_scores[dimension] = score
|
| 189 |
+
|
| 190 |
+
# Analyze behavior counts
|
| 191 |
+
self.count_behaviors(transcript_df)
|
| 192 |
+
|
| 193 |
+
def count_behaviors(self, transcript_df):
|
| 194 |
+
"""Count specific behaviors in transcript"""
|
| 195 |
+
model = genai.GenerativeModel('gemini-1.5-flash')
|
| 196 |
+
generation_config = genai.GenerationConfig(max_output_tokens=2048)
|
| 197 |
+
# Create behavior detection prompt
|
| 198 |
+
behavior_prompt = """
|
| 199 |
+
You are an expert in Motivational Interviewing. Analyze the following therapist utterance and identify any of these behaviors:
|
| 200 |
+
- Giving Information (GI)
|
| 201 |
+
- Persuade
|
| 202 |
+
- Persuade with Permission
|
| 203 |
+
- Question (Q)
|
| 204 |
+
- Simple Reflection (SR)
|
| 205 |
+
- Complex Reflection (CR)
|
| 206 |
+
- Affirm (AF)
|
| 207 |
+
- Seeking Collaboration (Seek)
|
| 208 |
+
- Emphasizing Autonomy (Emphasize)
|
| 209 |
+
- Confront
|
| 210 |
+
|
| 211 |
+
Return results in JSON format, e.g., {"GI":1, "Persuade":0, ...}
|
| 212 |
+
"""
|
| 213 |
+
|
| 214 |
+
for _, row in transcript_df.iterrows():
|
| 215 |
+
if row['P or C'] == 'P': # Provider/Therapist utterance
|
| 216 |
+
|
| 217 |
+
behavior_full_prompt = f"{behavior_prompt}\n\nUtterance: {row['Content of Utterance']}"
|
| 218 |
+
response = model.generate_content(
|
| 219 |
+
behavior_full_prompt,
|
| 220 |
+
generation_config=generation_config
|
| 221 |
+
)
|
| 222 |
+
try:
|
| 223 |
+
# Extract JSON from response
|
| 224 |
+
behaviors = json.loads(response.text)
|
| 225 |
+
for behavior, count in behaviors.items():
|
| 226 |
+
key = behavior.lower().replace(" ", "_")
|
| 227 |
+
if key in self.behavior_counts:
|
| 228 |
+
self.behavior_counts[key] += count
|
| 229 |
+
except Exception as e:
|
| 230 |
+
st.warning(f"Could not parse behaviors for utterance: {row['Content of Utterance']}\nError: {e}")
|
| 231 |
+
|
| 232 |
+
def calculate_summary_scores(self):
|
| 233 |
+
"""Calculate MITI summary scores"""
|
| 234 |
+
summary = {}
|
| 235 |
+
|
| 236 |
+
# Technical Global
|
| 237 |
+
if all(self.global_scores[s] is not None for s in ['cultivating_change', 'softening_sustain-talk']):
|
| 238 |
+
summary['technical'] = (self.global_scores['cultivating_change'] +
|
| 239 |
+
self.global_scores['softening_sustain-talk']) / 2
|
| 240 |
+
|
| 241 |
+
# Relational Global
|
| 242 |
+
if all(self.global_scores[s] is not None for s in ['partnership', 'empathy']):
|
| 243 |
+
summary['relational'] = (self.global_scores['partnership'] +
|
| 244 |
+
self.global_scores['empathy']) / 2
|
| 245 |
+
|
| 246 |
+
# % Complex Reflections
|
| 247 |
+
total_reflections = self.behavior_counts['sr'] + self.behavior_counts['cr']
|
| 248 |
+
if total_reflections > 0:
|
| 249 |
+
summary['pct_cr'] = (self.behavior_counts['cr'] / total_reflections) * 100
|
| 250 |
+
|
| 251 |
+
# Reflection-to-Question Ratio
|
| 252 |
+
if self.behavior_counts['question'] > 0:
|
| 253 |
+
summary['r_to_q'] = total_reflections / self.behavior_counts['question']
|
| 254 |
+
|
| 255 |
+
# Total MI-Adherent
|
| 256 |
+
summary['total_mia'] = (self.behavior_counts['seek'] +
|
| 257 |
+
self.behavior_counts['affirm'] +
|
| 258 |
+
self.behavior_counts['emphasize'])
|
| 259 |
+
|
| 260 |
+
# Total MI Non-Adherent
|
| 261 |
+
summary['total_mina'] = (self.behavior_counts['confront'] +
|
| 262 |
+
self.behavior_counts['persuade'])
|
| 263 |
+
|
| 264 |
+
return summary
|
| 265 |
+
|
| 266 |
+
@staticmethod
|
| 267 |
+
def load_prompt(filename):
|
| 268 |
+
"""Load prompt from file"""
|
| 269 |
+
try:
|
| 270 |
+
with open(filename, 'r') as f:
|
| 271 |
+
return f.read()
|
| 272 |
+
except Exception as e:
|
| 273 |
+
st.error(f"Could not load prompt file: {filename}\nError: {e}")
|
| 274 |
+
return ""
|
| 275 |
+
|
| 276 |
+
def render_miti_results(analyzer):
|
| 277 |
+
"""Render MITI results in Streamlit"""
|
| 278 |
+
st.header("MITI Evaluation Results")
|
| 279 |
+
|
| 280 |
+
# Global Scores
|
| 281 |
+
st.subheader("Global Scores")
|
| 282 |
+
global_scores_df = pd.DataFrame(analyzer.global_scores.items(), columns=['Dimension', 'Score'])
|
| 283 |
+
st.table(global_scores_df)
|
| 284 |
+
|
| 285 |
+
# Behavior Counts
|
| 286 |
+
st.subheader("Behavior Counts")
|
| 287 |
+
counts_df = pd.DataFrame(analyzer.behavior_counts.items(), columns=['Behavior', 'Count'])
|
| 288 |
+
st.table(counts_df)
|
| 289 |
+
|
| 290 |
+
# Summary Scores
|
| 291 |
+
st.subheader("Summary Scores")
|
| 292 |
+
summary = analyzer.calculate_summary_scores()
|
| 293 |
+
summary_items = summary.items()
|
| 294 |
+
if summary_items:
|
| 295 |
+
summary_df = pd.DataFrame(summary_items, columns=['Metric', 'Value'])
|
| 296 |
+
st.table(summary_df)
|
| 297 |
+
else:
|
| 298 |
+
st.write("No summary scores available.")
|
| 299 |
+
|
| 300 |
+
def export_results(analyzer, export_format):
|
| 301 |
+
"""Export results in specified format"""
|
| 302 |
+
results = {
|
| 303 |
+
'global_scores': analyzer.global_scores,
|
| 304 |
+
'behavior_counts': analyzer.behavior_counts,
|
| 305 |
+
'summary_scores': analyzer.calculate_summary_scores()
|
| 306 |
+
}
|
| 307 |
+
if export_format == "JSON":
|
| 308 |
+
return json.dumps(results, indent=2)
|
| 309 |
+
elif export_format == "CSV":
|
| 310 |
+
# Convert results to CSV format
|
| 311 |
+
all_results = {**analyzer.global_scores, **analyzer.behavior_counts, **analyzer.calculate_summary_scores()}
|
| 312 |
+
df = pd.DataFrame(list(all_results.items()), columns=['Metric', 'Value'])
|
| 313 |
+
return df.to_csv(index=False)
|
| 314 |
+
elif export_format == "TXT":
|
| 315 |
+
# Plain text format
|
| 316 |
+
output = ""
|
| 317 |
+
output += "Global Scores:\n"
|
| 318 |
+
for k, v in analyzer.global_scores.items():
|
| 319 |
+
output += f"{k}: {v}\n"
|
| 320 |
+
output += "\nBehavior Counts:\n"
|
| 321 |
+
for k, v in analyzer.behavior_counts.items():
|
| 322 |
+
output += f"{k}: {v}\n"
|
| 323 |
+
output += "\nSummary Scores:\n"
|
| 324 |
+
for k, v in analyzer.calculate_summary_scores().items():
|
| 325 |
+
output += f"{k}: {v}\n"
|
| 326 |
+
return output
|
| 327 |
+
|
| 328 |
+
def main():
|
| 329 |
+
st.title("MITI Session Analyzer")
|
| 330 |
+
|
| 331 |
+
# Hide Streamlit's default hamburger menu
|
| 332 |
+
hide_streamlit_style = """
|
| 333 |
+
<style>
|
| 334 |
+
#MainMenu {visibility: hidden;}
|
| 335 |
+
footer {visibility: hidden;}
|
| 336 |
+
</style>
|
| 337 |
+
"""
|
| 338 |
+
st.markdown(hide_streamlit_style, unsafe_allow_html=True)
|
| 339 |
+
|
| 340 |
+
# Initialize processors
|
| 341 |
+
if 'media_processor' not in st.session_state:
|
| 342 |
+
if "HF_AUTH_TOKEN" not in st.secrets:
|
| 343 |
+
st.error("Hugging Face Auth Token not found. Please add it to Streamlit secrets.")
|
| 344 |
+
return
|
| 345 |
+
st.session_state.media_processor = MediaProcessor(
|
| 346 |
+
auth_token=st.secrets["HF_AUTH_TOKEN"]
|
| 347 |
+
)
|
| 348 |
+
if 'miti_analyzer' not in st.session_state:
|
| 349 |
+
if "GEMINI_API_KEY" not in st.secrets:
|
| 350 |
+
st.error("Gemini API Key not found. Please add it to Streamlit secrets.")
|
| 351 |
+
return
|
| 352 |
+
st.session_state.miti_analyzer = MITIAnalyzer(
|
| 353 |
+
api_key=st.secrets["GEMINI_API_KEY"]
|
| 354 |
+
)
|
| 355 |
+
|
| 356 |
+
# File upload section
|
| 357 |
+
st.subheader("Upload Session Recording or Transcript")
|
| 358 |
+
|
| 359 |
+
file_type = st.radio(
|
| 360 |
+
"Select input type:",
|
| 361 |
+
["Audio/Video Recording", "Text Transcript"]
|
| 362 |
+
)
|
| 363 |
+
|
| 364 |
+
if file_type == "Audio/Video Recording":
|
| 365 |
+
supported_formats = (
|
| 366 |
+
st.session_state.media_processor.supported_formats['audio'] +
|
| 367 |
+
st.session_state.media_processor.supported_formats['video']
|
| 368 |
+
)
|
| 369 |
+
|
| 370 |
+
uploaded_file = st.file_uploader(
|
| 371 |
+
"Upload recording",
|
| 372 |
+
type=[fmt[1:] for fmt in supported_formats]
|
| 373 |
+
)
|
| 374 |
+
|
| 375 |
+
if uploaded_file:
|
| 376 |
+
progress_bar = st.progress(0)
|
| 377 |
+
with st.spinner("Processing media file..."):
|
| 378 |
+
try:
|
| 379 |
+
transcript_df = st.session_state.media_processor.process_media(
|
| 380 |
+
uploaded_file,
|
| 381 |
+
progress_bar
|
| 382 |
+
)
|
| 383 |
+
st.session_state.transcript_df = transcript_df
|
| 384 |
+
|
| 385 |
+
# Display transcript
|
| 386 |
+
st.subheader("Generated Transcript")
|
| 387 |
+
st.dataframe(transcript_df)
|
| 388 |
+
|
| 389 |
+
# Allow transcript editing
|
| 390 |
+
if st.checkbox("Edit Transcript"):
|
| 391 |
+
st.session_state.transcript_df = st.data_editor(
|
| 392 |
+
transcript_df,
|
| 393 |
+
num_rows="dynamic"
|
| 394 |
+
)
|
| 395 |
+
|
| 396 |
+
except Exception as e:
|
| 397 |
+
st.error(f"Error processing file: {str(e)}")
|
| 398 |
+
|
| 399 |
+
else: # Text Transcript
|
| 400 |
+
uploaded_file = st.file_uploader(
|
| 401 |
+
"Upload transcript (CSV format)",
|
| 402 |
+
type=['csv']
|
| 403 |
+
)
|
| 404 |
+
|
| 405 |
+
if uploaded_file:
|
| 406 |
+
try:
|
| 407 |
+
transcript_df = pd.read_csv(uploaded_file)
|
| 408 |
+
st.session_state.transcript_df = transcript_df
|
| 409 |
+
st.subheader("Transcript")
|
| 410 |
+
st.dataframe(transcript_df)
|
| 411 |
+
# Allow transcript editing
|
| 412 |
+
if st.checkbox("Edit Transcript"):
|
| 413 |
+
st.session_state.transcript_df = st.data_editor(
|
| 414 |
+
transcript_df,
|
| 415 |
+
num_rows="dynamic"
|
| 416 |
+
)
|
| 417 |
+
|
| 418 |
+
except Exception as e:
|
| 419 |
+
st.error(f"Error reading transcript: {str(e)}")
|
| 420 |
+
|
| 421 |
+
# Analysis section
|
| 422 |
+
if 'transcript_df' in st.session_state:
|
| 423 |
+
st.subheader("MITI Analysis")
|
| 424 |
+
|
| 425 |
+
if st.button("Generate MITI Ratings"):
|
| 426 |
+
with st.spinner("Analyzing session..."):
|
| 427 |
+
st.session_state.miti_analyzer.analyze_transcript(
|
| 428 |
+
st.session_state.transcript_df
|
| 429 |
+
)
|
| 430 |
+
render_miti_results(st.session_state.miti_analyzer)
|
| 431 |
+
|
| 432 |
+
# Save results
|
| 433 |
+
st.session_state.last_results = st.session_state.miti_analyzer
|
| 434 |
+
|
| 435 |
+
# Export options
|
| 436 |
+
if 'last_results' in st.session_state:
|
| 437 |
+
st.subheader("Export Analysis Report")
|
| 438 |
+
export_format = st.selectbox(
|
| 439 |
+
"Select export format",
|
| 440 |
+
["JSON", "CSV", "TXT"]
|
| 441 |
+
)
|
| 442 |
+
|
| 443 |
+
if st.button("Download Report"):
|
| 444 |
+
report_data = export_results(
|
| 445 |
+
st.session_state.last_results,
|
| 446 |
+
export_format
|
| 447 |
+
)
|
| 448 |
+
file_extension = export_format.lower()
|
| 449 |
+
st.download_button(
|
| 450 |
+
label="Download Report",
|
| 451 |
+
data=report_data,
|
| 452 |
+
file_name=f"miti_analysis.{file_extension}",
|
| 453 |
+
mime=f"text/{file_extension}" if export_format != 'JSON' else 'application/json'
|
| 454 |
+
)
|
| 455 |
+
|
| 456 |
+
if __name__ == "__main__":
|
| 457 |
+
main()
|
requirements (1).txt
ADDED
|
@@ -0,0 +1,9 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
streamlit
|
| 2 |
+
pandas
|
| 3 |
+
google-generativeai
|
| 4 |
+
git+https://github.com/openai/whisper.git
|
| 5 |
+
torch
|
| 6 |
+
numpy
|
| 7 |
+
moviepy
|
| 8 |
+
pyannote.audio
|
| 9 |
+
ffmpeg-python
|