Update inference_app.py
Browse files- inference_app.py +37 -12
inference_app.py
CHANGED
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@@ -104,6 +104,30 @@ def get_metrics(
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columns=mapping,
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inplace=True,
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)
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end_time = time.time()
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run_time = end_time - start_time
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return gr.DataFrame(metrics, visible=True), run_time
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@@ -138,23 +162,24 @@ def get_metrics_pinder(
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metrics = pd.DataFrame([failed_metrics])
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metrics["system"] = native.stem
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gr.Error(f"Failed to evaluate prediction [{prediction}]:\n{e}")
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API.upload_file(
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path_or_fileobj=
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path_in_repo=f"{dataset}/{methodname}/{system_id}/",
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repo_id=QUEUE_REPO,
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repo_type="dataset",
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commit_message=f"Add {model_name} to eval queue",
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)
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API.upload_file(
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path_or_fileobj=complex_file.name,
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path_in_repo=f"{dataset}/{methodname}/{system_id}/",
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repo_id=QUEUE_REPO,
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repo_type="dataset",
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commit_message=f"Add {model_name} to eval queue",
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)
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end_time = time.time()
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run_time = end_time - start_time
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return gr.DataFrame(metrics, visible=True), run_time
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@@ -220,7 +245,7 @@ with gr.Blocks() as app:
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eval_btn.click(
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get_metrics,
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inputs=[input_system_id, input_receptor_file, input_ligand_file, flexible, posebusters],
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outputs=[metric_table, eval_run_time],
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)
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eval_btn_pinder.click(
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columns=mapping,
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inplace=True,
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)
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if store:
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with tempfile.NamedTemporaryFile as temp:
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metrics.to_csv(temp.name)
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API.upload_file(
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path_or_fileobj=temp.name,
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path_in_repo=f"{dataset}/{methodname}/{system_id}/",
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repo_id=QUEUE_REPO,
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repo_type="dataset",
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commit_message=f"Add {model_name} to eval queue",
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)
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API.upload_file(
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path_or_fileobj=receptor_file.name,
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path_in_repo=f"{dataset}/{methodname}/{system_id}/",
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repo_id=QUEUE_REPO,
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repo_type="dataset",
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commit_message=f"Add {model_name} to eval queue",
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)
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API.upload_file(
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path_or_fileobj=ligand_file.name,
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path_in_repo=f"{dataset}/{methodname}/{system_id}/",
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repo_id=QUEUE_REPO,
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repo_type="dataset",
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commit_message=f"Add {model_name} to eval queue",
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)
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end_time = time.time()
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run_time = end_time - start_time
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return gr.DataFrame(metrics, visible=True), run_time
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metrics = pd.DataFrame([failed_metrics])
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metrics["system"] = native.stem
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gr.Error(f"Failed to evaluate prediction [{prediction}]:\n{e}")
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if store:
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# Upload to hub
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with tempfile.NamedTemporaryFile as temp:
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metrics.to_csv(temp.name)
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API.upload_file(
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path_or_fileobj=temp.name,
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path_in_repo=f"{dataset}/{methodname}/{system_id}/",
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repo_id=QUEUE_REPO,
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repo_type="dataset",
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commit_message=f"Add {model_name} to eval queue",
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)
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API.upload_file(
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path_or_fileobj=complex_file.name,
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path_in_repo=f"{dataset}/{methodname}/{system_id}/",
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repo_id=QUEUE_REPO,
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repo_type="dataset",
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commit_message=f"Add {model_name} to eval queue",
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)
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end_time = time.time()
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run_time = end_time - start_time
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return gr.DataFrame(metrics, visible=True), run_time
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eval_btn.click(
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get_metrics,
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inputs=[input_system_id, input_receptor_file, input_ligand_file, flexible, posebusters, methodname, store],
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outputs=[metric_table, eval_run_time],
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)
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eval_btn_pinder.click(
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