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  1. .gitattributes +25 -0
  2. ash_animator/__init__.py +12 -0
  3. ash_animator/__pycache__/__init__.cpython-312.pyc +0 -0
  4. ash_animator/__pycache__/animation_all.cpython-312.pyc +0 -0
  5. ash_animator/__pycache__/animation_single.cpython-312.pyc +0 -0
  6. ash_animator/__pycache__/animation_vertical.cpython-312.pyc +0 -0
  7. ash_animator/__pycache__/basemaps.cpython-312.pyc +0 -0
  8. ash_animator/__pycache__/converter.cpython-312.pyc +0 -0
  9. ash_animator/__pycache__/export.cpython-312.pyc +0 -0
  10. ash_animator/__pycache__/interpolation.cpython-312.pyc +0 -0
  11. ash_animator/__pycache__/plot_3dfield_data.cpython-312.pyc +0 -0
  12. ash_animator/__pycache__/plot_horizontal_data.cpython-312.pyc +0 -0
  13. ash_animator/__pycache__/utils.cpython-312.pyc +0 -0
  14. ash_animator/animation_all.py +516 -0
  15. ash_animator/animation_single.py +147 -0
  16. ash_animator/animation_vertical.py +360 -0
  17. ash_animator/basemaps.py +131 -0
  18. ash_animator/converter.py +414 -0
  19. ash_animator/export.py +119 -0
  20. ash_animator/interpolation.py +14 -0
  21. ash_animator/plot_3dfield_data.py +465 -0
  22. ash_animator/plot_horizontal_data.py +564 -0
  23. ash_animator/utils.py +23 -0
  24. ash_output/3D/T1.nc +3 -0
  25. ash_output/3D/T10.nc +3 -0
  26. ash_output/3D/T2.nc +3 -0
  27. ash_output/3D/T3.nc +3 -0
  28. ash_output/3D/T4.nc +3 -0
  29. ash_output/3D/T5.nc +3 -0
  30. ash_output/3D/T6.nc +3 -0
  31. ash_output/3D/T7.nc +3 -0
  32. ash_output/3D/T8.nc +3 -0
  33. ash_output/3D/T9.nc +3 -0
  34. ash_output/horizontal/AQOutput_HorizontalField_C1_T10_202001121400.nc +3 -0
  35. ash_output/horizontal/AQOutput_HorizontalField_C1_T1_202001120500.nc +3 -0
  36. ash_output/horizontal/AQOutput_HorizontalField_C1_T2_202001120600.nc +3 -0
  37. ash_output/horizontal/AQOutput_HorizontalField_C1_T3_202001120700.nc +3 -0
  38. ash_output/horizontal/AQOutput_HorizontalField_C1_T4_202001120800.nc +3 -0
  39. ash_output/horizontal/AQOutput_HorizontalField_C1_T5_202001120900.nc +3 -0
  40. ash_output/horizontal/AQOutput_HorizontalField_C1_T6_202001121000.nc +3 -0
  41. ash_output/horizontal/AQOutput_HorizontalField_C1_T7_202001121100.nc +3 -0
  42. ash_output/horizontal/AQOutput_HorizontalField_C1_T8_202001121200.nc +3 -0
  43. ash_output/horizontal/AQOutput_HorizontalField_C1_T9_202001121300.nc +3 -0
  44. media/2D/2d_fields/air_concentration/air_concentration.gif +3 -0
  45. media/2D/frames/air_concentration/frame_0001.jpg +3 -0
  46. media/2D/frames/air_concentration/frame_0008.jpg +3 -0
  47. media/2D/frames/air_concentration/frame_0009.jpg +3 -0
  48. media/2D/frames/air_concentration/frame_0010.jpg +3 -0
  49. media/Taal_273070_20200112_scenario_yizhou.zip +3 -0
  50. media/default_model.zip +3 -0
.gitattributes CHANGED
@@ -32,3 +32,28 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
32
  *.zip filter=lfs diff=lfs merge=lfs -text
33
  *.zst filter=lfs diff=lfs merge=lfs -text
34
  *tfevents* filter=lfs diff=lfs merge=lfs -text
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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  *.zip filter=lfs diff=lfs merge=lfs -text
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  *.zst filter=lfs diff=lfs merge=lfs -text
34
  *tfevents* filter=lfs diff=lfs merge=lfs -text
35
+ ash_output/3D/T1.nc filter=lfs diff=lfs merge=lfs -text
36
+ ash_output/3D/T10.nc filter=lfs diff=lfs merge=lfs -text
37
+ ash_output/3D/T2.nc filter=lfs diff=lfs merge=lfs -text
38
+ ash_output/3D/T3.nc filter=lfs diff=lfs merge=lfs -text
39
+ ash_output/3D/T4.nc filter=lfs diff=lfs merge=lfs -text
40
+ ash_output/3D/T5.nc filter=lfs diff=lfs merge=lfs -text
41
+ ash_output/3D/T6.nc filter=lfs diff=lfs merge=lfs -text
42
+ ash_output/3D/T7.nc filter=lfs diff=lfs merge=lfs -text
43
+ ash_output/3D/T8.nc filter=lfs diff=lfs merge=lfs -text
44
+ ash_output/3D/T9.nc filter=lfs diff=lfs merge=lfs -text
45
+ ash_output/horizontal/AQOutput_HorizontalField_C1_T1_202001120500.nc filter=lfs diff=lfs merge=lfs -text
46
+ ash_output/horizontal/AQOutput_HorizontalField_C1_T10_202001121400.nc filter=lfs diff=lfs merge=lfs -text
47
+ ash_output/horizontal/AQOutput_HorizontalField_C1_T2_202001120600.nc filter=lfs diff=lfs merge=lfs -text
48
+ ash_output/horizontal/AQOutput_HorizontalField_C1_T3_202001120700.nc filter=lfs diff=lfs merge=lfs -text
49
+ ash_output/horizontal/AQOutput_HorizontalField_C1_T4_202001120800.nc filter=lfs diff=lfs merge=lfs -text
50
+ ash_output/horizontal/AQOutput_HorizontalField_C1_T5_202001120900.nc filter=lfs diff=lfs merge=lfs -text
51
+ ash_output/horizontal/AQOutput_HorizontalField_C1_T6_202001121000.nc filter=lfs diff=lfs merge=lfs -text
52
+ ash_output/horizontal/AQOutput_HorizontalField_C1_T7_202001121100.nc filter=lfs diff=lfs merge=lfs -text
53
+ ash_output/horizontal/AQOutput_HorizontalField_C1_T8_202001121200.nc filter=lfs diff=lfs merge=lfs -text
54
+ ash_output/horizontal/AQOutput_HorizontalField_C1_T9_202001121300.nc filter=lfs diff=lfs merge=lfs -text
55
+ media/2D/2d_fields/air_concentration/air_concentration.gif filter=lfs diff=lfs merge=lfs -text
56
+ media/2D/frames/air_concentration/frame_0001.jpg filter=lfs diff=lfs merge=lfs -text
57
+ media/2D/frames/air_concentration/frame_0008.jpg filter=lfs diff=lfs merge=lfs -text
58
+ media/2D/frames/air_concentration/frame_0009.jpg filter=lfs diff=lfs merge=lfs -text
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+ media/2D/frames/air_concentration/frame_0010.jpg filter=lfs diff=lfs merge=lfs -text
ash_animator/__init__.py ADDED
@@ -0,0 +1,12 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+
2
+ # Auto-generated __init__.py to import all modules
3
+ from .basemaps import *
4
+ from .converter import *
5
+ from .interpolation import *
6
+ from .plot_3dfield_data import *
7
+ from .plot_horizontal_data import *
8
+ from .utils import *
9
+ from .animation_all import *
10
+ from .animation_single import *
11
+ from .animation_vertical import *
12
+ from .export import *
ash_animator/__pycache__/__init__.cpython-312.pyc ADDED
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ash_animator/__pycache__/animation_all.cpython-312.pyc ADDED
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ash_animator/__pycache__/animation_single.cpython-312.pyc ADDED
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ash_animator/__pycache__/animation_vertical.cpython-312.pyc ADDED
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ash_animator/__pycache__/basemaps.cpython-312.pyc ADDED
Binary file (5.01 kB). View file
 
ash_animator/__pycache__/converter.cpython-312.pyc ADDED
Binary file (14.2 kB). View file
 
ash_animator/__pycache__/export.cpython-312.pyc ADDED
Binary file (9.3 kB). View file
 
ash_animator/__pycache__/interpolation.cpython-312.pyc ADDED
Binary file (1.03 kB). View file
 
ash_animator/__pycache__/plot_3dfield_data.cpython-312.pyc ADDED
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ash_animator/__pycache__/plot_horizontal_data.cpython-312.pyc ADDED
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ash_animator/__pycache__/utils.cpython-312.pyc ADDED
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ash_animator/animation_all.py ADDED
@@ -0,0 +1,516 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+
2
+ # import os
3
+ # import numpy as np
4
+ # import matplotlib.pyplot as plt
5
+ # import matplotlib.animation as animation
6
+ # import matplotlib.ticker as mticker
7
+ # import cartopy.crs as ccrs
8
+ # import cartopy.feature as cfeature
9
+ # from adjustText import adjust_text
10
+ # import cartopy.io.shapereader as shpreader
11
+ # from .interpolation import interpolate_grid
12
+ # from .basemaps import draw_etopo_basemap
13
+
14
+ # def animate_all_z_levels(animator, output_folder: str, fps: int = 2, threshold: float = 0.1):
15
+ # os.makedirs(output_folder, exist_ok=True)
16
+
17
+ # countries_shp = shpreader.natural_earth(resolution='110m', category='cultural', name='admin_0_countries')
18
+ # reader = shpreader.Reader(countries_shp)
19
+ # country_geoms = list(reader.records())
20
+
21
+ # for z_index, z_val in enumerate(animator.levels):
22
+ # fig = plt.figure(figsize=(16, 7))
23
+ # proj = ccrs.PlateCarree()
24
+ # ax1 = fig.add_subplot(1, 2, 1, projection=proj)
25
+ # ax2 = fig.add_subplot(1, 2, 2, projection=proj)
26
+
27
+ # valid_mask = np.stack([
28
+ # ds['ash_concentration'].values[z_index] for ds in animator.datasets
29
+ # ]).max(axis=0) > 0
30
+ # y_idx, x_idx = np.where(valid_mask)
31
+
32
+ # if y_idx.size == 0 or x_idx.size == 0:
33
+ # print(f"Z level {z_val} km has no valid data. Skipping...")
34
+ # plt.close()
35
+ # continue
36
+
37
+ # y_min, y_max = y_idx.min(), y_idx.max()
38
+ # x_min, x_max = x_idx.min(), x_idx.max()
39
+
40
+ # buffer_y = int((y_max - y_min) * 0.5)
41
+ # buffer_x = int((x_max - x_min) * 0.5)
42
+
43
+ # y_start = max(0, y_min - buffer_y)
44
+ # y_end = min(animator.lat_grid.shape[0], y_max + buffer_y + 1)
45
+ # x_start = max(0, x_min - buffer_x)
46
+ # x_end = min(animator.lon_grid.shape[1], x_max + buffer_x + 1)
47
+
48
+ # lat_zoom = animator.lats[y_start:y_end]
49
+ # lon_zoom = animator.lons[x_start:x_end]
50
+ # lon_zoom_grid, lat_zoom_grid = np.meshgrid(lon_zoom, lat_zoom)
51
+
52
+ # valid_frames = []
53
+ # for t in range(len(animator.datasets)):
54
+ # data = animator.datasets[t]['ash_concentration'].values[z_index]
55
+ # interp = interpolate_grid(data, animator.lon_grid, animator.lat_grid)
56
+ # interp = np.where(interp < 0, np.nan, interp)
57
+ # if np.isfinite(interp).sum() > 0:
58
+ # valid_frames.append(t)
59
+
60
+ # if not valid_frames:
61
+ # print(f"No valid frames for Z={z_val} km. Skipping animation.")
62
+ # plt.close()
63
+ # continue
64
+
65
+ # def update(t):
66
+ # ax1.clear()
67
+ # ax2.clear()
68
+
69
+ # data = animator.datasets[t]['ash_concentration'].values[z_index]
70
+ # interp = interpolate_grid(data, animator.lon_grid, animator.lat_grid)
71
+ # interp = np.where(interp < 0, np.nan, interp)
72
+ # zoom_plot = interp[y_start:y_end, x_start:x_end]
73
+
74
+ # valid_vals = interp[np.isfinite(interp)]
75
+ # if valid_vals.size == 0:
76
+ # return []
77
+
78
+ # min_val = np.nanmin(valid_vals)
79
+ # max_val = np.nanmax(valid_vals)
80
+ # log_cutoff = 1e-3
81
+ # log_ratio = max_val / (min_val + 1e-6)
82
+ # use_log = min_val > log_cutoff and log_ratio > 100
83
+
84
+ # if use_log:
85
+ # data_for_plot = np.where(interp > log_cutoff, interp, np.nan)
86
+ # levels = np.logspace(np.log10(log_cutoff), np.log10(max_val), 20)
87
+ # scale_label = "Hybrid Log"
88
+ # else:
89
+ # data_for_plot = interp
90
+ # levels = np.linspace(0, max_val, 20)
91
+ # scale_label = "Linear"
92
+
93
+ # draw_etopo_basemap(ax1, mode='stock')
94
+ # draw_etopo_basemap(ax2, mode='stock')
95
+
96
+ # c1 = ax1.contourf(animator.lons, animator.lats, data_for_plot, levels=levels,
97
+ # cmap="rainbow", alpha=0.6, transform=proj)
98
+ # ax1.contour(animator.lons, animator.lats, data_for_plot, levels=levels,
99
+ # colors='black', linewidths=0.5, transform=proj)
100
+ # ax1.set_title(f"T{t+1} | Alt: {z_val} km (Full - {scale_label})")
101
+ # ax1.set_extent([animator.lons.min(), animator.lons.max(), animator.lats.min(), animator.lats.max()])
102
+ # ax1.coastlines()
103
+ # ax1.add_feature(cfeature.BORDERS, linestyle=':')
104
+ # ax1.add_feature(cfeature.LAND)
105
+ # ax1.add_feature(cfeature.OCEAN)
106
+
107
+ # c2 = ax2.contourf(lon_zoom_grid, lat_zoom_grid, zoom_plot, levels=levels,
108
+ # cmap="rainbow", alpha=0.4, transform=proj)
109
+ # ax2.contour(lon_zoom_grid, lat_zoom_grid, zoom_plot, levels=levels,
110
+ # colors='black', linewidths=0.5, transform=proj)
111
+ # ax2.set_title(f"T{t+1} | Alt: {z_val} km (Zoom - {scale_label})")
112
+ # ax2.set_extent([lon_zoom.min(), lon_zoom.max(), lat_zoom.min(), lat_zoom.max()])
113
+ # ax2.coastlines()
114
+ # ax2.add_feature(cfeature.BORDERS, linestyle=':')
115
+ # ax2.add_feature(cfeature.LAND)
116
+ # ax2.add_feature(cfeature.OCEAN)
117
+
118
+ # ax2.text(animator.lons[0], animator.lats[0], animator.country_label, fontsize=9, color='white',
119
+ # transform=proj, bbox=dict(facecolor='black', alpha=0.5))
120
+
121
+ # texts_ax1, texts_ax2 = [], []
122
+ # for country in country_geoms:
123
+ # name = country.attributes['NAME_LONG']
124
+ # geom = country.geometry
125
+ # try:
126
+ # lon, lat = geom.centroid.x, geom.centroid.y
127
+ # if (lon_zoom.min() <= lon <= lon_zoom.max()) and (lat_zoom.min() <= lat <= lat_zoom.max()):
128
+ # text = ax2.text(lon, lat, name, fontsize=6, transform=proj,
129
+ # ha='center', va='center', color='white',
130
+ # bbox=dict(facecolor='black', alpha=0.5, linewidth=0))
131
+ # texts_ax2.append(text)
132
+
133
+ # if (animator.lons.min() <= lon <= animator.lons.max()) and (animator.lats.min() <= lat <= animator.lats.max()):
134
+ # text = ax1.text(lon, lat, name, fontsize=6, transform=proj,
135
+ # ha='center', va='center', color='white',
136
+ # bbox=dict(facecolor='black', alpha=0.5, linewidth=0))
137
+ # texts_ax1.append(text)
138
+ # except:
139
+ # continue
140
+
141
+ # adjust_text(texts_ax1, ax=ax1, only_move={'points': 'y', 'text': 'y'},
142
+ # arrowprops=dict(arrowstyle="->", color='white', lw=0.5))
143
+ # adjust_text(texts_ax2, ax=ax2, only_move={'points': 'y', 'text': 'y'},
144
+ # arrowprops=dict(arrowstyle="->", color='white', lw=0.5))
145
+
146
+ # if np.nanmax(valid_vals) > threshold:
147
+ # alert_text = f"⚠ Exceeds {threshold} g/m³!"
148
+ # for ax in [ax1, ax2]:
149
+ # ax.text(0.99, 0.01, alert_text, transform=ax.transAxes,
150
+ # ha='right', va='bottom', fontsize=10, color='red',
151
+ # bbox=dict(facecolor='white', alpha=0.8, edgecolor='red'))
152
+ # ax1.contour(animator.lons, animator.lats, interp, levels=[threshold], colors='red', linewidths=2, transform=proj)
153
+ # ax2.contour(lon_zoom_grid, lat_zoom_grid, zoom_plot, levels=[threshold], colors='red', linewidths=2, transform=proj)
154
+
155
+ # if not hasattr(update, "colorbar"):
156
+ # update.colorbar = fig.colorbar(c1, ax=[ax1, ax2], orientation='vertical',
157
+ # label="Ash concentration (g/m³)")
158
+ # formatter = mticker.FuncFormatter(lambda x, _: f'{x:.2g}')
159
+ # update.colorbar.ax.yaxis.set_major_formatter(formatter)
160
+ # if use_log:
161
+ # update.colorbar.ax.text(1.05, 1.02, "log scale", transform=update.colorbar.ax.transAxes,
162
+ # fontsize=9, color='gray', rotation=90, ha='left', va='bottom')
163
+
164
+ # return []
165
+
166
+ # ani = animation.FuncAnimation(fig, update, frames=valid_frames, blit=False)
167
+ # gif_path = os.path.join(output_folder, f"ash_T1-Tn_Z{z_index+1}.gif")
168
+ # ani.save(gif_path, writer='pillow', fps=fps)
169
+ # plt.close()
170
+ # print(f"✅ Saved animation for Z={z_val} km to {gif_path}")
171
+ ###################################################################################################################
172
+ # import os
173
+ # import numpy as np
174
+ # import matplotlib.pyplot as plt
175
+ # import matplotlib.animation as animation
176
+ # import matplotlib.ticker as mticker
177
+ # import cartopy.crs as ccrs
178
+ # import cartopy.feature as cfeature
179
+ # from adjustText import adjust_text
180
+ # import cartopy.io.shapereader as shpreader
181
+ # from .interpolation import interpolate_grid
182
+ # from .basemaps import draw_etopo_basemap
183
+
184
+ # def animate_all_z_levels(animator, output_folder: str, fps: int = 2, threshold: float = 0.1):
185
+ # os.makedirs(output_folder, exist_ok=True)
186
+
187
+ # countries_shp = shpreader.natural_earth(resolution='110m', category='cultural', name='admin_0_countries')
188
+ # reader = shpreader.Reader(countries_shp)
189
+ # country_geoms = list(reader.records())
190
+
191
+ # # Compute consistent zoom window across all z-levels and time frames
192
+ # valid_mask_all = np.zeros_like(animator.datasets[0]['ash_concentration'].values[0], dtype=bool)
193
+ # for ds in animator.datasets:
194
+ # for z in range(len(animator.levels)):
195
+ # valid_mask_all |= ds['ash_concentration'].values[z] > 0
196
+
197
+ # y_idx_all, x_idx_all = np.where(valid_mask_all)
198
+ # if y_idx_all.size == 0 or x_idx_all.size == 0:
199
+ # raise ValueError("No valid data found across any Z level or frame.")
200
+
201
+ # y_min, y_max = y_idx_all.min(), y_idx_all.max()
202
+ # x_min, x_max = x_idx_all.min(), x_idx_all.max()
203
+ # buffer_y = int((y_max - y_min) * 0.5)
204
+ # buffer_x = int((x_max - x_min) * 0.5)
205
+
206
+ # y_start = max(0, y_min - buffer_y)
207
+ # y_end = min(animator.lat_grid.shape[0], y_max + buffer_y + 1)
208
+ # x_start = max(0, x_min - buffer_x)
209
+ # x_end = min(animator.lon_grid.shape[1], x_max + buffer_x + 1)
210
+
211
+ # lat_zoom = animator.lats[y_start:y_end]
212
+ # lon_zoom = animator.lons[x_start:x_end]
213
+ # lon_zoom_grid, lat_zoom_grid = np.meshgrid(lon_zoom, lat_zoom)
214
+
215
+ # for z_index, z_val in enumerate(animator.levels):
216
+ # fig = plt.figure(figsize=(16, 7))
217
+ # proj = ccrs.PlateCarree()
218
+ # ax1 = fig.add_subplot(1, 2, 1, projection=proj)
219
+ # ax2 = fig.add_subplot(1, 2, 2, projection=proj)
220
+
221
+ # valid_frames = []
222
+ # for t in range(len(animator.datasets)):
223
+ # data = animator.datasets[t]['ash_concentration'].values[z_index]
224
+ # interp = interpolate_grid(data, animator.lon_grid, animator.lat_grid)
225
+ # interp = np.where(interp < 0, np.nan, interp)
226
+ # if np.isfinite(interp).sum() > 0:
227
+ # valid_frames.append(t)
228
+
229
+ # if not valid_frames:
230
+ # print(f"No valid frames for Z={z_val} km. Skipping animation.")
231
+ # plt.close()
232
+ # continue
233
+
234
+ # def update(t):
235
+ # ax1.clear()
236
+ # ax2.clear()
237
+
238
+ # data = animator.datasets[t]['ash_concentration'].values[z_index]
239
+ # interp = interpolate_grid(data, animator.lon_grid, animator.lat_grid)
240
+ # interp = np.where(interp < 0, np.nan, interp)
241
+ # zoom_plot = interp[y_start:y_end, x_start:x_end]
242
+
243
+ # valid_vals = interp[np.isfinite(interp)]
244
+ # if valid_vals.size == 0:
245
+ # return []
246
+
247
+ # min_val = np.nanmin(valid_vals)
248
+ # max_val = np.nanmax(valid_vals)
249
+ # log_cutoff = 1e-3
250
+ # log_ratio = max_val / (min_val + 1e-6)
251
+ # use_log = min_val > log_cutoff and log_ratio > 100
252
+
253
+ # if use_log:
254
+ # data_for_plot = np.where(interp > log_cutoff, interp, np.nan)
255
+ # levels = np.logspace(np.log10(log_cutoff), np.log10(max_val), 20)
256
+ # scale_label = "Hybrid Log"
257
+ # else:
258
+ # data_for_plot = interp
259
+ # levels = np.linspace(0, max_val, 20)
260
+ # scale_label = "Linear"
261
+
262
+ # draw_etopo_basemap(ax1, mode='stock')
263
+ # draw_etopo_basemap(ax2, mode='stock')
264
+
265
+ # c1 = ax1.contourf(animator.lons, animator.lats, data_for_plot, levels=levels,
266
+ # cmap="rainbow", alpha=0.6, transform=proj)
267
+ # ax1.contour(animator.lons, animator.lats, data_for_plot, levels=levels,
268
+ # colors='black', linewidths=0.5, transform=proj)
269
+ # ax1.set_title(f"T{t+1} | Alt: {z_val} km (Full - {scale_label})")
270
+ # ax1.set_extent([animator.lons.min(), animator.lons.max(), animator.lats.min(), animator.lats.max()])
271
+ # ax1.coastlines()
272
+ # ax1.add_feature(cfeature.BORDERS, linestyle=':')
273
+ # ax1.add_feature(cfeature.LAND)
274
+ # ax1.add_feature(cfeature.OCEAN)
275
+
276
+ # c2 = ax2.contourf(lon_zoom_grid, lat_zoom_grid, zoom_plot, levels=levels,
277
+ # cmap="rainbow", alpha=0.4, transform=proj)
278
+ # ax2.contour(lon_zoom_grid, lat_zoom_grid, zoom_plot, levels=levels,
279
+ # colors='black', linewidths=0.5, transform=proj)
280
+ # ax2.set_title(f"T{t+1} | Alt: {z_val} km (Zoom - {scale_label})")
281
+ # ax2.set_extent([lon_zoom.min(), lon_zoom.max(), lat_zoom.min(), lat_zoom.max()])
282
+ # ax2.coastlines()
283
+ # ax2.add_feature(cfeature.BORDERS, linestyle=':')
284
+ # ax2.add_feature(cfeature.LAND)
285
+ # ax2.add_feature(cfeature.OCEAN)
286
+
287
+ # ax2.text(animator.lons[0], animator.lats[0], animator.country_label, fontsize=9, color='white',
288
+ # transform=proj, bbox=dict(facecolor='black', alpha=0.5))
289
+
290
+ # texts_ax1, texts_ax2 = [], []
291
+ # for country in country_geoms:
292
+ # name = country.attributes['NAME_LONG']
293
+ # geom = country.geometry
294
+ # try:
295
+ # lon, lat = geom.centroid.x, geom.centroid.y
296
+ # if (lon_zoom.min() <= lon <= lon_zoom.max()) and (lat_zoom.min() <= lat <= lat_zoom.max()):
297
+ # text = ax2.text(lon, lat, name, fontsize=6, transform=proj,
298
+ # ha='center', va='center', color='white',
299
+ # bbox=dict(facecolor='black', alpha=0.5, linewidth=0))
300
+ # texts_ax2.append(text)
301
+
302
+ # if (animator.lons.min() <= lon <= animator.lons.max()) and (animator.lats.min() <= lat <= animator.lats.max()):
303
+ # text = ax1.text(lon, lat, name, fontsize=6, transform=proj,
304
+ # ha='center', va='center', color='white',
305
+ # bbox=dict(facecolor='black', alpha=0.5, linewidth=0))
306
+ # texts_ax1.append(text)
307
+ # except:
308
+ # continue
309
+
310
+ # adjust_text(texts_ax1, ax=ax1, only_move={'points': 'y', 'text': 'y'},
311
+ # arrowprops=dict(arrowstyle="->", color='white', lw=0.5))
312
+ # adjust_text(texts_ax2, ax=ax2, only_move={'points': 'y', 'text': 'y'},
313
+ # arrowprops=dict(arrowstyle="->", color='white', lw=0.5))
314
+
315
+ # if np.nanmax(valid_vals) > threshold:
316
+ # alert_text = f"⚠ Exceeds {threshold} g/m³!"
317
+ # for ax in [ax1, ax2]:
318
+ # ax.text(0.99, 0.01, alert_text, transform=ax.transAxes,
319
+ # ha='right', va='bottom', fontsize=10, color='red',
320
+ # bbox=dict(facecolor='white', alpha=0.8, edgecolor='red'))
321
+ # ax1.contour(animator.lons, animator.lats, interp, levels=[threshold], colors='red', linewidths=2, transform=proj)
322
+ # ax2.contour(lon_zoom_grid, lat_zoom_grid, zoom_plot, levels=[threshold], colors='red', linewidths=2, transform=proj)
323
+
324
+ # if not hasattr(update, "colorbar"):
325
+ # update.colorbar = fig.colorbar(c1, ax=[ax1, ax2], orientation='vertical',
326
+ # label="Ash concentration (g/m³)")
327
+ # formatter = mticker.FuncFormatter(lambda x, _: f'{x:.2g}')
328
+ # update.colorbar.ax.yaxis.set_major_formatter(formatter)
329
+ # if use_log:
330
+ # update.colorbar.ax.text(1.05, 1.02, "log scale", transform=update.colorbar.ax.transAxes,
331
+ # fontsize=9, color='gray', rotation=90, ha='left', va='bottom')
332
+
333
+ # return []
334
+
335
+ # ani = animation.FuncAnimation(fig, update, frames=valid_frames, blit=False)
336
+ # gif_path = os.path.join(output_folder, f"ash_T1-Tn_Z{z_index+1}.gif")
337
+ # ani.save(gif_path, writer='pillow', fps=fps)
338
+ # plt.close()
339
+ # print(f"✅ Saved animation for Z={z_val} km to {gif_path}")
340
+
341
+
342
+ import os
343
+ import numpy as np
344
+ import matplotlib.pyplot as plt
345
+ import matplotlib.animation as animation
346
+ import matplotlib.ticker as mticker
347
+ import cartopy.crs as ccrs
348
+ import cartopy.feature as cfeature
349
+ from adjustText import adjust_text
350
+ import cartopy.io.shapereader as shpreader
351
+ from .interpolation import interpolate_grid
352
+ from .basemaps import draw_etopo_basemap
353
+
354
+ def animate_all_z_levels(animator, output_folder: str, fps: int = 2, threshold: float = 0.1,
355
+ zoom_width_deg: float = 6.0, zoom_height_deg: float = 6.0):
356
+ os.makedirs(output_folder, exist_ok=True)
357
+
358
+ countries_shp = shpreader.natural_earth(resolution='110m', category='cultural', name='admin_0_countries')
359
+ reader = shpreader.Reader(countries_shp)
360
+ country_geoms = list(reader.records())
361
+
362
+ # Find the most active region (max concentration point)
363
+ max_conc = -np.inf
364
+ center_lat = center_lon = None
365
+ for ds in animator.datasets:
366
+ for z in range(len(animator.levels)):
367
+ data = ds['ash_concentration'].values[z]
368
+ if np.max(data) > max_conc:
369
+ max_conc = np.max(data)
370
+ max_idx = np.unravel_index(np.argmax(data), data.shape)
371
+ center_lat = animator.lat_grid[max_idx]
372
+ center_lon = animator.lon_grid[max_idx]
373
+
374
+ if center_lat is None or center_lon is None:
375
+ raise ValueError("No valid concentration found to determine zoom center.")
376
+
377
+ # Compute fixed zoom extents in lat/lon degrees
378
+ lon_zoom_min = center_lon - zoom_width_deg / 2
379
+ lon_zoom_max = center_lon + zoom_width_deg / 2
380
+ lat_zoom_min = center_lat - zoom_height_deg / 2
381
+ lat_zoom_max = center_lat + zoom_height_deg / 2
382
+
383
+ # Create zoom grids for plotting
384
+ lat_zoom = animator.lats[(animator.lats >= lat_zoom_min) & (animator.lats <= lat_zoom_max)]
385
+ lon_zoom = animator.lons[(animator.lons >= lon_zoom_min) & (animator.lons <= lon_zoom_max)]
386
+ lon_zoom_grid, lat_zoom_grid = np.meshgrid(lon_zoom, lat_zoom)
387
+
388
+ for z_index, z_val in enumerate(animator.levels):
389
+ fig = plt.figure(figsize=(16, 7))
390
+ proj = ccrs.PlateCarree()
391
+ ax1 = fig.add_subplot(1, 2, 1, projection=proj)
392
+ ax2 = fig.add_subplot(1, 2, 2, projection=proj)
393
+
394
+ valid_frames = []
395
+ for t in range(len(animator.datasets)):
396
+ data = animator.datasets[t]['ash_concentration'].values[z_index]
397
+ interp = interpolate_grid(data, animator.lon_grid, animator.lat_grid)
398
+ interp = np.where(interp < 0, np.nan, interp)
399
+ if np.isfinite(interp).sum() > 0:
400
+ valid_frames.append(t)
401
+
402
+ if not valid_frames:
403
+ print(f"No valid frames for Z={z_val} km. Skipping animation.")
404
+ plt.close()
405
+ continue
406
+
407
+ def update(t):
408
+ ax1.clear()
409
+ ax2.clear()
410
+
411
+ data = animator.datasets[t]['ash_concentration'].values[z_index]
412
+ interp = interpolate_grid(data, animator.lon_grid, animator.lat_grid)
413
+ interp = np.where(interp < 0, np.nan, interp)
414
+
415
+ # Extract zoom window from interpolated data
416
+ lat_idx = np.where((animator.lats >= lat_zoom_min) & (animator.lats <= lat_zoom_max))[0]
417
+ lon_idx = np.where((animator.lons >= lon_zoom_min) & (animator.lons <= lon_zoom_max))[0]
418
+ zoom_plot = interp[np.ix_(lat_idx, lon_idx)]
419
+
420
+ valid_vals = interp[np.isfinite(interp)]
421
+ if valid_vals.size == 0:
422
+ return []
423
+
424
+ min_val = np.nanmin(valid_vals)
425
+ max_val = np.nanmax(valid_vals)
426
+ log_cutoff = 1e-3
427
+ log_ratio = max_val / (min_val + 1e-6)
428
+ use_log = min_val > log_cutoff and log_ratio > 100
429
+
430
+ if use_log:
431
+ data_for_plot = np.where(interp > log_cutoff, interp, np.nan)
432
+ levels = np.logspace(np.log10(log_cutoff), np.log10(max_val), 20)
433
+ scale_label = "Hybrid Log"
434
+ else:
435
+ data_for_plot = interp
436
+ levels = np.linspace(0, max_val, 20)
437
+ scale_label = "Linear"
438
+
439
+ draw_etopo_basemap(ax1, mode='stock')
440
+ draw_etopo_basemap(ax2, mode='stock')
441
+
442
+ c1 = ax1.contourf(animator.lons, animator.lats, data_for_plot, levels=levels,
443
+ cmap="rainbow", alpha=0.6, transform=proj)
444
+ ax1.contour(animator.lons, animator.lats, data_for_plot, levels=levels,
445
+ colors='black', linewidths=0.5, transform=proj)
446
+ ax1.set_title(f"T{t+1} | Alt: {z_val} km (Full - {scale_label})")
447
+ ax1.set_extent([animator.lons.min(), animator.lons.max(), animator.lats.min(), animator.lats.max()])
448
+ ax1.coastlines()
449
+ ax1.add_feature(cfeature.BORDERS, linestyle=':')
450
+ ax1.add_feature(cfeature.LAND)
451
+ ax1.add_feature(cfeature.OCEAN)
452
+
453
+ c2 = ax2.contourf(lon_zoom_grid, lat_zoom_grid, zoom_plot, levels=levels,
454
+ cmap="rainbow", alpha=0.4, transform=proj)
455
+ ax2.contour(lon_zoom_grid, lat_zoom_grid, zoom_plot, levels=levels,
456
+ colors='black', linewidths=0.5, transform=proj)
457
+ ax2.set_title(f"T{t+1} | Alt: {z_val} km (Zoom - {scale_label})")
458
+ ax2.set_extent([lon_zoom_min, lon_zoom_max, lat_zoom_min, lat_zoom_max])
459
+ ax2.coastlines()
460
+ ax2.add_feature(cfeature.BORDERS, linestyle=':')
461
+ ax2.add_feature(cfeature.LAND)
462
+ ax2.add_feature(cfeature.OCEAN)
463
+
464
+ ax2.text(animator.lons[0], animator.lats[0], animator.country_label, fontsize=9, color='white',
465
+ transform=proj, bbox=dict(facecolor='black', alpha=0.5))
466
+
467
+ texts_ax1, texts_ax2 = [], []
468
+ for country in country_geoms:
469
+ name = country.attributes['NAME_LONG']
470
+ geom = country.geometry
471
+ try:
472
+ lon, lat = geom.centroid.x, geom.centroid.y
473
+ if (lon_zoom_min <= lon <= lon_zoom_max) and (lat_zoom_min <= lat <= lat_zoom_max):
474
+ text = ax2.text(lon, lat, name, fontsize=6, transform=proj,
475
+ ha='center', va='center', color='white',
476
+ bbox=dict(facecolor='black', alpha=0.5, linewidth=0))
477
+ texts_ax2.append(text)
478
+
479
+ if (animator.lons.min() <= lon <= animator.lons.max()) and (animator.lats.min() <= lat <= animator.lats.max()):
480
+ text = ax1.text(lon, lat, name, fontsize=6, transform=proj,
481
+ ha='center', va='center', color='white',
482
+ bbox=dict(facecolor='black', alpha=0.5, linewidth=0))
483
+ texts_ax1.append(text)
484
+ except:
485
+ continue
486
+
487
+ adjust_text(texts_ax1, ax=ax1, only_move={'points': 'y', 'text': 'y'},
488
+ arrowprops=dict(arrowstyle="->", color='white', lw=0.5))
489
+ adjust_text(texts_ax2, ax=ax2, only_move={'points': 'y', 'text': 'y'},
490
+ arrowprops=dict(arrowstyle="->", color='white', lw=0.5))
491
+
492
+ if np.nanmax(valid_vals) > threshold:
493
+ alert_text = f"⚠ Exceeds {threshold} g/m³!"
494
+ for ax in [ax1, ax2]:
495
+ ax.text(0.99, 0.01, alert_text, transform=ax.transAxes,
496
+ ha='right', va='bottom', fontsize=10, color='red',
497
+ bbox=dict(facecolor='white', alpha=0.8, edgecolor='red'))
498
+ ax1.contour(animator.lons, animator.lats, interp, levels=[threshold], colors='red', linewidths=2, transform=proj)
499
+ ax2.contour(lon_zoom_grid, lat_zoom_grid, zoom_plot, levels=[threshold], colors='red', linewidths=2, transform=proj)
500
+
501
+ if not hasattr(update, "colorbar"):
502
+ update.colorbar = fig.colorbar(c1, ax=[ax1, ax2], orientation='vertical',
503
+ label="Ash concentration (g/m³)")
504
+ formatter = mticker.FuncFormatter(lambda x, _: f'{x:.2g}')
505
+ update.colorbar.ax.yaxis.set_major_formatter(formatter)
506
+ if use_log:
507
+ update.colorbar.ax.text(1.05, 1.02, "log scale", transform=update.colorbar.ax.transAxes,
508
+ fontsize=9, color='gray', rotation=90, ha='left', va='bottom')
509
+
510
+ return []
511
+
512
+ ani = animation.FuncAnimation(fig, update, frames=valid_frames, blit=False)
513
+ gif_path = os.path.join(output_folder, f"ash_T1-Tn_Z{z_index+1}.gif")
514
+ ani.save(gif_path, writer='pillow', fps=fps)
515
+ plt.close()
516
+ print(f"✅ Saved animation for Z={z_val} km to {gif_path}")
ash_animator/animation_single.py ADDED
@@ -0,0 +1,147 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+
2
+ import os
3
+ import numpy as np
4
+ import matplotlib.pyplot as plt
5
+ import matplotlib.animation as animation
6
+ import matplotlib.ticker as mticker
7
+ import cartopy.crs as ccrs
8
+ import cartopy.feature as cfeature
9
+ from .interpolation import interpolate_grid
10
+ from .basemaps import draw_etopo_basemap
11
+
12
+ def animate_single_z_level(animator, z_km: float, output_path: str, fps: int = 2, include_metadata: bool = True, threshold: float = 0.1):
13
+ if z_km not in animator.levels:
14
+ print(f"Z level {z_km} km not found in dataset.")
15
+ return
16
+
17
+ z_index = np.where(animator.levels == z_km)[0][0]
18
+ fig = plt.figure(figsize=(16, 7))
19
+ proj = ccrs.PlateCarree()
20
+ ax1 = fig.add_subplot(1, 2, 1, projection=proj)
21
+ ax2 = fig.add_subplot(1, 2, 2, projection=proj)
22
+
23
+ meta = animator.datasets[0].attrs
24
+ legend_text = (
25
+ f"Run name: {meta.get('run_name', 'N/A')}\n"
26
+ f"Run time: {meta.get('run_time', 'N/A')}\n"
27
+ f"Met data: {meta.get('met_data', 'N/A')}\n"
28
+ f"Start release: {meta.get('start_of_release', 'N/A')}\n"
29
+ f"End release: {meta.get('end_of_release', 'N/A')}\n"
30
+ f"Source strength: {meta.get('source_strength', 'N/A')} g/s\n"
31
+ f"Release loc: {meta.get('release_location', 'N/A')}\n"
32
+ f"Release height: {meta.get('release_height', 'N/A')} m asl\n"
33
+ f"Run duration: {meta.get('run_duration', 'N/A')}"
34
+ )
35
+
36
+ valid_mask = np.stack([
37
+ ds['ash_concentration'].values[z_index] for ds in animator.datasets
38
+ ]).max(axis=0) > 0
39
+ y_idx, x_idx = np.where(valid_mask)
40
+
41
+ if y_idx.size == 0 or x_idx.size == 0:
42
+ print(f"Z level {z_km} km has no valid data. Skipping...")
43
+ plt.close()
44
+ return
45
+
46
+ y_min, y_max = y_idx.min(), y_idx.max()
47
+ x_min, x_max = x_idx.min(), x_idx.max()
48
+ buffer_y = int((y_max - y_min) * 0.5)
49
+ buffer_x = int((x_max - x_min) * 0.5)
50
+ y_start = max(0, y_min - buffer_y)
51
+ y_end = min(animator.lat_grid.shape[0], y_max + buffer_y + 1)
52
+ x_start = max(0, x_min - buffer_x)
53
+ x_end = min(animator.lon_grid.shape[1], x_max + buffer_x + 1)
54
+
55
+ lat_zoom = animator.lats[y_start:y_end]
56
+ lon_zoom = animator.lons[x_start:x_end]
57
+ lon_zoom_grid, lat_zoom_grid = np.meshgrid(lon_zoom, lat_zoom)
58
+
59
+ valid_frames = []
60
+ for t in range(len(animator.datasets)):
61
+ interp = interpolate_grid(animator.datasets[t]['ash_concentration'].values[z_index],
62
+ animator.lon_grid, animator.lat_grid)
63
+ if np.isfinite(interp).sum() > 0:
64
+ valid_frames.append(t)
65
+
66
+ if not valid_frames:
67
+ print(f"No valid frames for Z={z_km} km. Skipping animation.")
68
+ plt.close()
69
+ return
70
+
71
+ def update(t):
72
+ ax1.clear()
73
+ ax2.clear()
74
+
75
+ data = animator.datasets[t]['ash_concentration'].values[z_index]
76
+ interp = interpolate_grid(data, animator.lon_grid, animator.lat_grid)
77
+ interp = np.where(interp < 0, np.nan, interp)
78
+ zoom_plot = interp[y_start:y_end, x_start:x_end]
79
+
80
+ valid_vals = interp[np.isfinite(interp)]
81
+ if valid_vals.size == 0:
82
+ return []
83
+
84
+ min_val = np.nanmin(valid_vals)
85
+ max_val = np.nanmax(valid_vals)
86
+ log_cutoff = 1e-3
87
+ use_log = min_val > log_cutoff and (max_val / (min_val + 1e-6)) > 100
88
+
89
+ levels = np.logspace(np.log10(log_cutoff), np.log10(max_val), 20) if use_log else np.linspace(0, max_val, 20)
90
+ data_for_plot = np.where(interp > log_cutoff, interp, 0) if use_log else interp
91
+ scale_label = "Log" if use_log else "Linear"
92
+
93
+ draw_etopo_basemap(ax1, mode='stock')
94
+ draw_etopo_basemap(ax2, mode='stock')
95
+
96
+ c1 = ax1.contourf(animator.lons, animator.lats, data_for_plot, levels=levels,
97
+ cmap="rainbow", alpha=0.6, transform=proj)
98
+ ax1.set_title(f"T{t+1} | Alt: {z_km} km (Full - {scale_label})")
99
+ ax1.set_extent([animator.lons.min(), animator.lons.max(), animator.lats.min(), animator.lats.max()])
100
+ ax1.coastlines(); ax1.add_feature(cfeature.BORDERS); ax1.add_feature(cfeature.LAND); ax1.add_feature(cfeature.OCEAN)
101
+
102
+ c2 = ax2.contourf(lon_zoom_grid, lat_zoom_grid, zoom_plot, levels=levels,
103
+ cmap="rainbow", alpha=0.6, transform=proj)
104
+ ax2.set_title(f"T{t+1} | Alt: {z_km} km (Zoom - {scale_label})")
105
+ ax2.set_extent([lon_zoom.min(), lon_zoom.max(), lat_zoom.min(), lat_zoom.max()])
106
+ ax2.coastlines(); ax2.add_feature(cfeature.BORDERS); ax2.add_feature(cfeature.LAND); ax2.add_feature(cfeature.OCEAN)
107
+
108
+ if not hasattr(update, "colorbar"):
109
+ update.colorbar = fig.colorbar(c1, ax=[ax1, ax2], orientation='vertical',
110
+ label="Ash concentration (g/m³)")
111
+ formatter = mticker.FuncFormatter(lambda x, _: f'{x:.2g}')
112
+ update.colorbar.ax.yaxis.set_major_formatter(formatter)
113
+ if use_log:
114
+ update.colorbar.ax.text(1.05, 1.02, "log scale", transform=update.colorbar.ax.transAxes,
115
+ fontsize=9, color='gray', rotation=90, ha='left', va='bottom')
116
+
117
+ if include_metadata:
118
+ ax1.annotate(legend_text, xy=(0.75, 0.99), xycoords='axes fraction',
119
+ fontsize=8, ha='left', va='top',
120
+ bbox=dict(boxstyle="round", facecolor="white", edgecolor="gray"))
121
+ for ax in [ax1, ax2]:
122
+ ax.text(0.01, 0.01,
123
+ f"Source: NAME\nRes: {animator.x_res:.2f}°\n{meta.get('run_name', 'N/A')}",
124
+ transform=ax.transAxes, fontsize=8, color='white',
125
+ bbox=dict(facecolor='black', alpha=0.5))
126
+
127
+ for ax in [ax1, ax2]:
128
+ ax.text(0.01, 0.98, f"Time step T{t+1}", transform=ax.transAxes,
129
+ fontsize=9, color='white', va='top', ha='left',
130
+ bbox=dict(facecolor='black', alpha=0.4, boxstyle='round'))
131
+
132
+ if np.nanmax(valid_vals) > threshold:
133
+ alert_text = f"⚠ Exceeds {threshold} g/m³!"
134
+ for ax in [ax1, ax2]:
135
+ ax.text(0.99, 0.01, alert_text, transform=ax.transAxes,
136
+ ha='right', va='bottom', fontsize=10, color='red',
137
+ bbox=dict(facecolor='white', alpha=0.8, edgecolor='red'))
138
+ ax1.contour(animator.lons, animator.lats, interp, levels=[threshold], colors='red', linewidths=2, transform=proj)
139
+ ax2.contour(lon_zoom_grid, lat_zoom_grid, zoom_plot, levels=[threshold], colors='red', linewidths=2, transform=proj)
140
+
141
+ return []
142
+
143
+ ani = animation.FuncAnimation(fig, update, frames=valid_frames, blit=False)
144
+ os.makedirs(os.path.dirname(output_path), exist_ok=True)
145
+ ani.save(output_path, writer='pillow', fps=fps)
146
+ plt.close()
147
+ print(f"✅ Saved animation for Z={z_km} km to {output_path}")
ash_animator/animation_vertical.py ADDED
@@ -0,0 +1,360 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+
2
+ import os
3
+ import numpy as np
4
+ import matplotlib.pyplot as plt
5
+ import matplotlib.animation as animation
6
+ import matplotlib.ticker as mticker
7
+ import cartopy.crs as ccrs
8
+ import cartopy.feature as cfeature
9
+ import cartopy.io.shapereader as shpreader
10
+ from .interpolation import interpolate_grid
11
+ from .basemaps import draw_etopo_basemap
12
+
13
+ # def animate_vertical_profile(animator, t_index: int, output_path: str, fps: int = 2, include_metadata: bool = True, threshold: float = 0.1):
14
+ # if not (0 <= t_index < len(animator.datasets)):
15
+ # print(f"Invalid time index {t_index}. Must be between 0 and {len(animator.datasets) - 1}.")
16
+ # return
17
+
18
+ # ds = animator.datasets[t_index]
19
+ # fig = plt.figure(figsize=(16, 7))
20
+ # proj = ccrs.PlateCarree()
21
+ # ax1 = fig.add_subplot(1, 2, 1, projection=proj)
22
+ # ax2 = fig.add_subplot(1, 2, 2, projection=proj)
23
+
24
+ # meta = ds.attrs
25
+ # legend_text = (
26
+ # f"Run name: {meta.get('run_name', 'N/A')}\n"
27
+ # f"Run time: {meta.get('run_time', 'N/A')}\n"
28
+ # f"Met data: {meta.get('met_data', 'N/A')}\n"
29
+ # f"Start release: {meta.get('start_of_release', 'N/A')}\n"
30
+ # f"End release: {meta.get('end_of_release', 'N/A')}\n"
31
+ # f"Source strength: {meta.get('source_strength', 'N/A')} g/s\n"
32
+ # f"Release loc: {meta.get('release_location', 'N/A')}\n"
33
+ # f"Release height: {meta.get('release_height', 'N/A')} m asl\n"
34
+ # f"Run duration: {meta.get('run_duration', 'N/A')}"
35
+ # )
36
+
37
+ # valid_mask = np.stack([ds['ash_concentration'].values[z] for z in range(len(animator.levels))]).max(axis=0) > 0
38
+ # y_idx, x_idx = np.where(valid_mask)
39
+
40
+ # if y_idx.size == 0 or x_idx.size == 0:
41
+ # print(f"No valid data found for time T{t_index+1}. Skipping...")
42
+ # plt.close()
43
+ # return
44
+
45
+ # y_min, y_max = y_idx.min(), y_idx.max()
46
+ # x_min, x_max = x_idx.min(), x_idx.max()
47
+ # buffer_y = int((y_max - y_min) * 0.1)
48
+ # buffer_x = int((x_max - x_min) * 0.1)
49
+ # y_start = max(0, y_min - buffer_y)
50
+ # y_end = min(animator.lat_grid.shape[0], y_max + buffer_y + 1)
51
+ # x_start = max(0, x_min - buffer_x)
52
+ # x_end = min(animator.lon_grid.shape[1], x_max + buffer_x + 1)
53
+
54
+ # lat_zoom = animator.lats[y_start:y_end]
55
+ # lon_zoom = animator.lons[x_start:x_end]
56
+ # lon_zoom_grid, lat_zoom_grid = np.meshgrid(lon_zoom, lat_zoom)
57
+
58
+ # z_indices_with_data = []
59
+ # for z_index in range(len(animator.levels)):
60
+ # data = ds['ash_concentration'].values[z_index]
61
+ # interp = interpolate_grid(data, animator.lon_grid, animator.lat_grid)
62
+ # if np.isfinite(interp).sum() > 0:
63
+ # z_indices_with_data.append(z_index)
64
+
65
+ # if not z_indices_with_data:
66
+ # print(f"No valid Z-levels at time T{t_index+1}.")
67
+ # plt.close()
68
+ # return
69
+
70
+ # def update(z_index):
71
+ # ax1.clear()
72
+ # ax2.clear()
73
+
74
+ # data = ds['ash_concentration'].values[z_index]
75
+ # interp = interpolate_grid(data, animator.lon_grid, animator.lat_grid)
76
+ # interp = np.where(interp < 0, np.nan, interp)
77
+ # zoom_plot = interp[y_start:y_end, x_start:x_end]
78
+
79
+ # valid_vals = interp[np.isfinite(interp)]
80
+ # if valid_vals.size == 0:
81
+ # return []
82
+
83
+ # min_val = np.nanmin(valid_vals)
84
+ # max_val = np.nanmax(valid_vals)
85
+ # log_cutoff = 1e-3
86
+ # use_log = min_val > log_cutoff and (max_val / (min_val + 1e-6)) > 100
87
+
88
+ # levels = np.logspace(np.log10(log_cutoff), np.log10(max_val), 20) if use_log else np.linspace(0, max_val, 20)
89
+ # data_for_plot = np.where(interp > log_cutoff, interp, 0) if use_log else interp
90
+ # scale_label = "Log" if use_log else "Linear"
91
+
92
+ # draw_etopo_basemap(ax1, mode='stock')
93
+ # draw_etopo_basemap(ax2, mode='stock')
94
+
95
+ # c1 = ax1.contourf(animator.lons, animator.lats, data_for_plot, levels=levels,
96
+ # cmap="rainbow", alpha=0.6, transform=proj)
97
+ # ax1.set_title(f"T{t_index+1} | Alt: {animator.levels[z_index]} km (Full - {scale_label})")
98
+ # ax1.set_extent([animator.lons.min(), animator.lons.max(), animator.lats.min(), animator.lats.max()])
99
+ # ax1.coastlines(); ax1.add_feature(cfeature.BORDERS, linestyle=':')
100
+ # ax1.add_feature(cfeature.LAND); ax1.add_feature(cfeature.OCEAN)
101
+
102
+ # c2 = ax2.contourf(lon_zoom_grid, lat_zoom_grid, zoom_plot, levels=levels,
103
+ # cmap="rainbow", alpha=0.6, transform=proj)
104
+ # ax2.set_title(f"T{t_index+1} | Alt: {animator.levels[z_index]} km (Zoom - {scale_label})")
105
+ # ax2.set_extent([lon_zoom.min(), lon_zoom.max(), lat_zoom.min(), lat_zoom.max()])
106
+ # ax2.coastlines(); ax2.add_feature(cfeature.BORDERS, linestyle=':')
107
+ # ax2.add_feature(cfeature.LAND); ax2.add_feature(cfeature.OCEAN)
108
+
109
+ # for ax in [ax1, ax2]:
110
+ # ax.text(0.01, 0.98, f"Altitude: {animator.levels[z_index]:.2f} km", transform=ax.transAxes,
111
+ # fontsize=9, color='white', va='top', ha='left',
112
+ # bbox=dict(facecolor='black', alpha=0.4, boxstyle='round'))
113
+
114
+ # if include_metadata:
115
+ # ax.text(0.01, 0.01,
116
+ # f"Source: NAME\nRes: {animator.x_res:.2f}°\n{meta.get('run_name', 'N/A')}",
117
+ # transform=ax.transAxes, fontsize=8, color='white',
118
+ # bbox=dict(facecolor='black', alpha=0.5))
119
+
120
+ # if np.nanmax(valid_vals) > threshold:
121
+ # for ax in [ax1, ax2]:
122
+ # ax.text(0.99, 0.01, f"⚠ Exceeds {threshold} g/m³!", transform=ax.transAxes,
123
+ # ha='right', va='bottom', fontsize=10, color='red',
124
+ # bbox=dict(facecolor='white', alpha=0.8, edgecolor='red'))
125
+ # ax1.contour(animator.lons, animator.lats, interp, levels=[threshold], colors='red', linewidths=2, transform=proj)
126
+ # ax2.contour(lon_zoom_grid, lat_zoom_grid, zoom_plot, levels=[threshold], colors='red', linewidths=2, transform=proj)
127
+
128
+ # if include_metadata and not hasattr(update, "legend_text"):
129
+ # ax1.annotate(legend_text, xy=(0.75, 0.99), xycoords='axes fraction',
130
+ # fontsize=8, ha='left', va='top',
131
+ # bbox=dict(boxstyle="round", facecolor="white", edgecolor="gray"))
132
+
133
+ # if not hasattr(update, "colorbar"):
134
+ # update.colorbar = fig.colorbar(c1, ax=[ax1, ax2], orientation='vertical',
135
+ # label="Ash concentration (g/m³)")
136
+ # formatter = mticker.FuncFormatter(lambda x, _: f'{x:.2g}')
137
+ # update.colorbar.ax.yaxis.set_major_formatter(formatter)
138
+
139
+ # if use_log:
140
+ # update.colorbar.ax.text(1.05, 1.02, "log scale", transform=update.colorbar.ax.transAxes,
141
+ # fontsize=9, color='gray', rotation=90, ha='left', va='bottom')
142
+
143
+ # return []
144
+
145
+ # os.makedirs(os.path.dirname(output_path), exist_ok=True)
146
+ # ani = animation.FuncAnimation(fig, update, frames=z_indices_with_data, blit=False)
147
+ # ani.save(output_path, writer='pillow', fps=fps)
148
+ # plt.close()
149
+ # print(f"✅ Saved vertical profile animation for T{t_index+1} to {output_path}")
150
+
151
+ # def animate_all_vertical_profiles(animator, output_folder: str, fps: int = 2, include_metadata: bool = True, threshold: float = 0.1):
152
+ # os.makedirs(output_folder, exist_ok=True)
153
+ # for t_index in range(len(animator.datasets)):
154
+ # output_path = os.path.join(output_folder, f"vertical_T{t_index+1:02d}.gif")
155
+ # print(f"🔄 Generating vertical profile animation for T{t_index+1}...")
156
+ # animate_vertical_profile(animator, t_index, output_path, fps, include_metadata, threshold)
157
+
158
+ import os
159
+ import numpy as np
160
+ import matplotlib.pyplot as plt
161
+ import matplotlib.animation as animation
162
+ import matplotlib.ticker as mticker
163
+ import cartopy.crs as ccrs
164
+ import cartopy.feature as cfeature
165
+ import cartopy.io.shapereader as shpreader
166
+ from .interpolation import interpolate_grid
167
+ from .basemaps import draw_etopo_basemap
168
+ from adjustText import adjust_text
169
+
170
+ def animate_vertical_profile(animator, t_index: int, output_path: str, fps: int = 2,
171
+ include_metadata: bool = True, threshold: float = 0.1,
172
+ zoom_width_deg: float = 6.0, zoom_height_deg: float = 6.0):
173
+ if not (0 <= t_index < len(animator.datasets)):
174
+ print(f"Invalid time index {t_index}. Must be between 0 and {len(animator.datasets) - 1}.")
175
+ return
176
+
177
+ countries_shp = shpreader.natural_earth(resolution='110m', category='cultural', name='admin_0_countries')
178
+ reader = shpreader.Reader(countries_shp)
179
+ country_geoms = list(reader.records())
180
+
181
+ ds = animator.datasets[t_index]
182
+ fig = plt.figure(figsize=(18, 7)) # Wider for metadata outside
183
+ proj = ccrs.PlateCarree()
184
+ ax1 = fig.add_subplot(1, 2, 1, projection=proj)
185
+ ax2 = fig.add_subplot(1, 2, 2, projection=proj)
186
+
187
+ meta = ds.attrs
188
+ legend_text = (
189
+ f"Run name: {meta.get('run_name', 'N/A')}\n"
190
+ f"Run time: {meta.get('run_time', 'N/A')}\n"
191
+ f"Met data: {meta.get('met_data', 'N/A')}\n"
192
+ f"Start release: {meta.get('start_of_release', 'N/A')}\n"
193
+ f"End release: {meta.get('end_of_release', 'N/A')}\n"
194
+ f"Source strength: {meta.get('source_strength', 'N/A')} g/s\n"
195
+ f"Release loc: {meta.get('release_location', 'N/A')}\n"
196
+ f"Release height: {meta.get('release_height', 'N/A')} m asl\n"
197
+ f"Run duration: {meta.get('run_duration', 'N/A')}"
198
+ )
199
+
200
+ # 🔍 Find most active point at this time step
201
+ max_conc = -np.inf
202
+ center_lat = center_lon = None
203
+ for z in range(len(animator.levels)):
204
+ data = ds['ash_concentration'].values[z]
205
+ if np.max(data) > max_conc:
206
+ max_conc = np.max(data)
207
+ max_idx = np.unravel_index(np.argmax(data), data.shape)
208
+ center_lat = animator.lat_grid[max_idx]
209
+ center_lon = animator.lon_grid[max_idx]
210
+
211
+ if center_lat is None or center_lon is None:
212
+ print(f"No valid data found for time T{t_index+1}. Skipping...")
213
+ plt.close()
214
+ return
215
+
216
+ # 🌍 Define fixed zoom extents
217
+ lon_zoom_min = center_lon - zoom_width_deg / 2
218
+ lon_zoom_max = center_lon + zoom_width_deg / 2
219
+ lat_zoom_min = center_lat - zoom_height_deg / 2
220
+ lat_zoom_max = center_lat + zoom_height_deg / 2
221
+
222
+ lat_zoom = animator.lats[(animator.lats >= lat_zoom_min) & (animator.lats <= lat_zoom_max)]
223
+ lon_zoom = animator.lons[(animator.lons >= lon_zoom_min) & (animator.lons <= lon_zoom_max)]
224
+ lon_zoom_grid, lat_zoom_grid = np.meshgrid(lon_zoom, lat_zoom)
225
+
226
+ z_indices_with_data = []
227
+ for z_index in range(len(animator.levels)):
228
+ data = ds['ash_concentration'].values[z_index]
229
+ interp = interpolate_grid(data, animator.lon_grid, animator.lat_grid)
230
+ if np.isfinite(interp).sum() > 0:
231
+ z_indices_with_data.append(z_index)
232
+
233
+ if not z_indices_with_data:
234
+ print(f"No valid Z-levels at time T{t_index+1}.")
235
+ plt.close()
236
+ return
237
+
238
+ def update(z_index):
239
+ ax1.clear()
240
+ ax2.clear()
241
+
242
+ data = ds['ash_concentration'].values[z_index]
243
+ interp = interpolate_grid(data, animator.lon_grid, animator.lat_grid)
244
+ interp = np.where(interp < 0, np.nan, interp)
245
+
246
+ lat_idx = np.where((animator.lats >= lat_zoom_min) & (animator.lats <= lat_zoom_max))[0]
247
+ lon_idx = np.where((animator.lons >= lon_zoom_min) & (animator.lons <= lon_zoom_max))[0]
248
+ zoom_plot = interp[np.ix_(lat_idx, lon_idx)]
249
+
250
+ valid_vals = interp[np.isfinite(interp)]
251
+ if valid_vals.size == 0:
252
+ return []
253
+
254
+ min_val = np.nanmin(valid_vals)
255
+ max_val = np.nanmax(valid_vals)
256
+ log_cutoff = 1e-3
257
+ use_log = min_val > log_cutoff and (max_val / (min_val + 1e-6)) > 100
258
+
259
+ levels = np.logspace(np.log10(log_cutoff), np.log10(max_val), 20) if use_log else np.linspace(0, max_val, 20)
260
+ data_for_plot = np.where(interp > log_cutoff, interp, 0) if use_log else interp
261
+ scale_label = "Log" if use_log else "Linear"
262
+
263
+ draw_etopo_basemap(ax1, mode='stock')
264
+ draw_etopo_basemap(ax2, mode='stock')
265
+
266
+ c1 = ax1.contourf(animator.lons, animator.lats, data_for_plot, levels=levels,
267
+ cmap="rainbow", alpha=0.6, transform=proj)
268
+ ax1.set_title(f"T{t_index+1} | Alt: {animator.levels[z_index]} km (Full - {scale_label})")
269
+ ax1.set_extent([animator.lons.min(), animator.lons.max(), animator.lats.min(), animator.lats.max()])
270
+ ax1.coastlines(); ax1.add_feature(cfeature.BORDERS, linestyle=':')
271
+ ax1.add_feature(cfeature.LAND); ax1.add_feature(cfeature.OCEAN)
272
+
273
+ c2 = ax2.contourf(lon_zoom_grid, lat_zoom_grid, zoom_plot, levels=levels,
274
+ cmap="rainbow", alpha=0.6, transform=proj)
275
+ ax2.set_title(f"T{t_index+1} | Alt: {animator.levels[z_index]} km (Zoom - {scale_label})")
276
+ ax2.set_extent([lon_zoom_min, lon_zoom_max, lat_zoom_min, lat_zoom_max])
277
+ ax2.coastlines(); ax2.add_feature(cfeature.BORDERS, linestyle=':')
278
+ ax2.add_feature(cfeature.LAND); ax2.add_feature(cfeature.OCEAN)
279
+
280
+ for ax in [ax1, ax2]:
281
+ ax.text(0.01, 0.98, f"Altitude: {animator.levels[z_index]:.2f} km", transform=ax.transAxes,
282
+ fontsize=9, color='white', va='top', ha='left',
283
+ bbox=dict(facecolor='black', alpha=0.4, boxstyle='round'))
284
+
285
+ if include_metadata:
286
+ fig.text(0.50, 0.1, legend_text, va='center', ha='left', fontsize=8,
287
+ bbox=dict(facecolor='white', alpha=0.8, edgecolor='gray'),
288
+ transform=fig.transFigure)
289
+
290
+ if np.nanmax(valid_vals) > threshold:
291
+ for ax in [ax1, ax2]:
292
+ ax.text(0.99, 0.01, f"⚠ Exceeds {threshold} g/m³!", transform=ax.transAxes,
293
+ ha='right', va='bottom', fontsize=10, color='red',
294
+ bbox=dict(facecolor='white', alpha=0.8, edgecolor='red'))
295
+ ax1.contour(animator.lons, animator.lats, interp, levels=[threshold], colors='red', linewidths=2, transform=proj)
296
+ ax2.contour(lon_zoom_grid, lat_zoom_grid, zoom_plot, levels=[threshold], colors='red', linewidths=2, transform=proj)
297
+
298
+ if not hasattr(update, "colorbar"):
299
+ update.colorbar = fig.colorbar(c1, ax=[ax1, ax2], orientation='vertical',
300
+ label="Ash concentration (g/m³)", shrink=0.75)
301
+ formatter = mticker.FuncFormatter(lambda x, _: f'{x:.2g}')
302
+ update.colorbar.ax.yaxis.set_major_formatter(formatter)
303
+
304
+ if use_log:
305
+ update.colorbar.ax.text(1.05, 1.02, "log scale", transform=update.colorbar.ax.transAxes,
306
+ fontsize=9, color='gray', rotation=90, ha='left', va='bottom')
307
+
308
+ ######################3
309
+
310
+
311
+ texts_ax1, texts_ax2 = [], []
312
+ for country in country_geoms:
313
+ name = country.attributes['NAME_LONG']
314
+ geom = country.geometry
315
+ try:
316
+ lon, lat = geom.centroid.x, geom.centroid.y
317
+ if (lon_zoom_min <= lon <= lon_zoom_max) and (lat_zoom_min <= lat <= lat_zoom_max):
318
+ text = ax2.text(lon, lat, name, fontsize=6, transform=proj,
319
+ ha='center', va='center', color='white',
320
+ bbox=dict(facecolor='black', alpha=0.5, linewidth=0))
321
+ texts_ax2.append(text)
322
+
323
+ if (animator.lons.min() <= lon <= animator.lons.max()) and (animator.lats.min() <= lat <= animator.lats.max()):
324
+ text = ax1.text(lon, lat, name, fontsize=6, transform=proj,
325
+ ha='center', va='center', color='white',
326
+ bbox=dict(facecolor='black', alpha=0.5, linewidth=0))
327
+ texts_ax1.append(text)
328
+ except:
329
+ continue
330
+
331
+ adjust_text(texts_ax1, ax=ax1, only_move={'points': 'y', 'text': 'y'},
332
+ arrowprops=dict(arrowstyle="->", color='white', lw=0.5))
333
+ adjust_text(texts_ax2, ax=ax2, only_move={'points': 'y', 'text': 'y'},
334
+ arrowprops=dict(arrowstyle="->", color='white', lw=0.5))
335
+
336
+
337
+ ############################################
338
+
339
+
340
+
341
+
342
+ return []
343
+
344
+ os.makedirs(os.path.dirname(output_path), exist_ok=True)
345
+ ani = animation.FuncAnimation(fig, update, frames=z_indices_with_data, blit=False)
346
+ ani.save(output_path, writer='pillow', fps=fps)
347
+ plt.close()
348
+ print(f"✅ Saved vertical profile animation for T{t_index+1} to {output_path}")
349
+
350
+
351
+ def animate_all_vertical_profiles(animator, output_folder: str, fps: int = 2,
352
+ include_metadata: bool = True, threshold: float = 0.1,
353
+ zoom_width_deg: float = 10.0, zoom_height_deg: float = 6.0):
354
+ os.makedirs(output_folder, exist_ok=True)
355
+ for t_index in range(len(animator.datasets)):
356
+ output_path = os.path.join(output_folder, f"vertical_T{t_index+1:02d}.gif")
357
+ print(f"🔄 Generating vertical profile animation for T{t_index+1}...")
358
+ animate_vertical_profile(animator, t_index, output_path, fps,
359
+ include_metadata, threshold,
360
+ zoom_width_deg, zoom_height_deg)
ash_animator/basemaps.py ADDED
@@ -0,0 +1,131 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+
2
+ # import contextily as ctx
3
+ # from mpl_toolkits.basemap import Basemap
4
+ # import cartopy.crs as ccrs
5
+ # import cartopy.feature as cfeature
6
+
7
+ # def draw_etopo_basemap(ax, mode="basemap", zoom=7):
8
+ # try:
9
+ # if mode == "stock":
10
+ # ax.stock_img()
11
+ # elif mode == "contextily":
12
+ # extent = ax.get_extent(ccrs.PlateCarree())
13
+ # ax.set_extent(extent, crs=ccrs.PlateCarree())
14
+ # ctx.add_basemap(ax, crs=ccrs.PlateCarree(), source=ctx.providers.CartoDB.Voyager, zoom=zoom)
15
+ # elif mode == "basemap":
16
+ # extent = ax.get_extent(ccrs.PlateCarree())
17
+ # m = Basemap(projection='cyl',
18
+ # llcrnrlon=extent[0], urcrnrlon=extent[1],
19
+ # llcrnrlat=extent[2], urcrnrlat=extent[3],
20
+ # resolution='h', ax=ax)
21
+ # m.shadedrelief()
22
+ # m.drawcoastlines(linewidth=0.5)
23
+ # m.drawcountries(linewidth=0.7)
24
+ # m.drawmapboundary()
25
+ # else:
26
+ # raise ValueError(f"Unsupported basemap mode: {mode}")
27
+ # except Exception as e:
28
+ # print(f"[Relief Error - {mode} mode]:", e)
29
+ # ax.add_feature(cfeature.LAND)
30
+ # ax.add_feature(cfeature.OCEAN)
31
+
32
+ import os
33
+ import hashlib
34
+ import contextily as ctx
35
+ from mpl_toolkits.basemap import Basemap
36
+ import cartopy.crs as ccrs
37
+ import cartopy.feature as cfeature
38
+ from PIL import Image
39
+ import matplotlib.pyplot as plt
40
+
41
+ # Define cache directories
42
+ # Optional: Set tile cache directory (must be done before contextily downloads tiles)
43
+ os.environ["XDG_CACHE_HOME"] = os.path.expanduser("~/.contextily_cache")
44
+
45
+ CTX_TILE_CACHE_DIR = os.path.expanduser("~/.contextily_cache")
46
+ BASEMAP_TILE_CACHE_DIR = os.path.expanduser("~/.basemap_cache")
47
+
48
+ os.makedirs(CTX_TILE_CACHE_DIR, exist_ok=True)
49
+ os.makedirs(BASEMAP_TILE_CACHE_DIR, exist_ok=True)
50
+
51
+ def draw_etopo_basemap(ax, mode="basemap", zoom=11):
52
+ """
53
+ Draws a high-resolution basemap background on the provided Cartopy GeoAxes.
54
+
55
+ Parameters
56
+ ----------
57
+ ax : matplotlib.axes._subplots.AxesSubplot
58
+ The matplotlib Axes object (with Cartopy projection) to draw the map background on.
59
+
60
+ mode : str, optional
61
+ The basemap mode to use:
62
+ - "stock": Default stock image from Cartopy.
63
+ - "contextily": Web tile background (CartoDB Voyager), with caching.
64
+ - "basemap": High-resolution shaded relief using Basemap, with caching.
65
+ Default is "basemap".
66
+
67
+ zoom : int, optional
68
+ Tile zoom level (only for "contextily"). Higher = more detail. Default is 7.
69
+
70
+ Notes
71
+ -----
72
+ - Uses high resolution for Basemap (resolution='h') and saves figure at 300 DPI.
73
+ - Cached images are reused using extent-based hashing to avoid re-rendering.
74
+ - Basemap is deprecated; Cartopy with web tiles is recommended for new projects.
75
+ """
76
+ try:
77
+ if mode == "stock":
78
+ ax.stock_img()
79
+
80
+ elif mode == "contextily":
81
+ extent = ax.get_extent(crs=ccrs.PlateCarree())
82
+ ax.set_extent(extent, crs=ccrs.PlateCarree())
83
+ ctx.add_basemap(
84
+ ax,
85
+ crs=ccrs.PlateCarree(),
86
+ source=ctx.providers.CartoDB.Voyager,
87
+ zoom=zoom
88
+ )
89
+
90
+ elif mode == "basemap":
91
+ extent = ax.get_extent(crs=ccrs.PlateCarree())
92
+
93
+ # Create a hash key for this extent
94
+ extent_str = f"{extent[0]:.4f}_{extent[1]:.4f}_{extent[2]:.4f}_{extent[3]:.4f}"
95
+ cache_key = hashlib.md5(extent_str.encode()).hexdigest()
96
+ cache_file = os.path.join(BASEMAP_TILE_CACHE_DIR, f"{cache_key}_highres.png")
97
+
98
+ if os.path.exists(cache_file):
99
+ img = Image.open(cache_file)
100
+ ax.imshow(img, extent=extent, transform=ccrs.PlateCarree())
101
+ else:
102
+ # Create a high-resolution temporary figure
103
+ temp_fig, temp_ax = plt.subplots(figsize=(12, 9),
104
+ subplot_kw={'projection': ccrs.PlateCarree()})
105
+ temp_ax.set_extent(extent, crs=ccrs.PlateCarree())
106
+
107
+ m = Basemap(projection='cyl',
108
+ llcrnrlon=extent[0], urcrnrlon=extent[1],
109
+ llcrnrlat=extent[2], urcrnrlat=extent[3],
110
+ resolution='f', ax=temp_ax) # 'h' = high resolution
111
+
112
+ m.shadedrelief()
113
+ # m.drawcoastlines(linewidth=0.1)
114
+ # m.drawcountries(linewidth=0.1)
115
+ # m.drawmapboundary()
116
+
117
+ # Save high-DPI figure for clarity
118
+ temp_fig.savefig(cache_file, dpi=300, bbox_inches='tight', pad_inches=0)
119
+ plt.close(temp_fig)
120
+
121
+ # Load and display the cached image
122
+ img = Image.open(cache_file)
123
+ ax.imshow(img, extent=extent, transform=ccrs.PlateCarree())
124
+
125
+ else:
126
+ raise ValueError(f"Unsupported basemap mode: {mode}")
127
+
128
+ except Exception as e:
129
+ print(f"[Relief Error - {mode} mode]:", e)
130
+ ax.add_feature(cfeature.LAND)
131
+ ax.add_feature(cfeature.OCEAN)
ash_animator/converter.py ADDED
@@ -0,0 +1,414 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ # # Full updated and corrected version of NAMEDataConverter with sanitized metadata keys
2
+
3
+ # import os
4
+ # import re
5
+ # import zipfile
6
+ # import shutil
7
+ # import numpy as np
8
+ # import xarray as xr
9
+ # import matplotlib.pyplot as plt
10
+ # import matplotlib.animation as animation
11
+ # from typing import List, Tuple
12
+
13
+ # class NAMEDataConverter:
14
+ # def __init__(self, output_dir: str):
15
+ # self.output_dir = output_dir
16
+ # os.makedirs(self.output_dir, exist_ok=True)
17
+
18
+ # def _sanitize_key(self, key: str) -> str:
19
+ # # Replace non-alphanumeric characters with underscores, and ensure it starts with a letter
20
+ # key = re.sub(r'\W+', '_', key)
21
+ # if not key[0].isalpha():
22
+ # key = f"attr_{key}"
23
+ # return key
24
+
25
+ # def _parse_metadata(self, lines: List[str]) -> dict:
26
+ # metadata = {}
27
+ # for line in lines:
28
+ # if ":" in line:
29
+ # key, value = line.split(":", 1)
30
+ # clean_key = self._sanitize_key(key.strip().lower())
31
+ # metadata[clean_key] = value.strip()
32
+
33
+ # try:
34
+ # metadata.update({
35
+ # "x_origin": float(metadata["x_grid_origin"]),
36
+ # "y_origin": float(metadata["y_grid_origin"]),
37
+ # "x_size": int(metadata["x_grid_size"]),
38
+ # "y_size": int(metadata["y_grid_size"]),
39
+ # "x_res": float(metadata["x_grid_resolution"]),
40
+ # "y_res": float(metadata["y_grid_resolution"]),
41
+ # "prelim_cols": int(metadata["number_of_preliminary_cols"]),
42
+ # "n_fields": int(metadata["number_of_field_cols"]),
43
+ # })
44
+ # except KeyError as e:
45
+ # raise ValueError(f"Missing required metadata field: {e}")
46
+ # except ValueError as e:
47
+ # raise ValueError(f"Invalid value in metadata: {e}")
48
+
49
+ # if metadata["x_res"] == 0 or metadata["y_res"] == 0:
50
+ # raise ZeroDivisionError("Grid resolution cannot be zero.")
51
+
52
+ # return metadata
53
+
54
+ # def _get_data_lines(self, lines: List[str]) -> List[str]:
55
+ # idx = next(i for i, l in enumerate(lines) if l.strip() == "Fields:")
56
+ # return lines[idx + 1:]
57
+
58
+ # def convert_3d_group(self, group: List[Tuple[int, str]], output_filename: str) -> str:
59
+ # first_file_path = group[0][1]
60
+ # with open(first_file_path, 'r') as f:
61
+ # lines = f.readlines()
62
+ # meta = self._parse_metadata(lines)
63
+
64
+ # lons = np.round(np.arange(meta["x_origin"], meta["x_origin"] + meta["x_size"] * meta["x_res"], meta["x_res"]), 6)
65
+ # lats = np.round(np.arange(meta["y_origin"], meta["y_origin"] + meta["y_size"] * meta["y_res"], meta["y_res"]), 6)
66
+
67
+ # z_levels = []
68
+ # z_coords = []
69
+
70
+ # for z_idx, filepath in group:
71
+ # with open(filepath, 'r') as f:
72
+ # lines = f.readlines()
73
+ # data_lines = self._get_data_lines(lines)
74
+ # grid = np.zeros((meta["y_size"], meta["x_size"]), dtype=np.float32)
75
+
76
+ # for line in data_lines:
77
+ # parts = [p.strip().strip(',') for p in line.strip().split(',') if p.strip()]
78
+ # if len(parts) >= 5 and parts[0].isdigit() and parts[1].isdigit():
79
+ # try:
80
+ # x = int(parts[0]) - 1
81
+ # y = int(parts[1]) - 1
82
+ # val = float(parts[4])
83
+ # if 0 <= x < meta["x_size"] and 0 <= y < meta["y_size"]:
84
+ # grid[y, x] = val
85
+ # except Exception:
86
+ # continue
87
+ # z_levels.append(grid)
88
+ # z_coords.append(z_idx)
89
+
90
+ # z_cube = np.stack(z_levels, axis=0)
91
+ # ds = xr.Dataset(
92
+ # {
93
+ # "ash_concentration": (['altitude', 'latitude', 'longitude'], z_cube)
94
+ # },
95
+ # coords={
96
+ # "altitude": np.array(z_coords, dtype=np.float32),
97
+ # "latitude": lats,
98
+ # "longitude": lons
99
+ # },
100
+ # attrs={
101
+ # "title": "Volcanic Ash Concentration",
102
+ # "source": "NAME model output processed to NetCDF",
103
+ # **{k: str(v) for k, v in meta.items()} # Ensure all attrs are strings
104
+ # }
105
+ # )
106
+ # ds["ash_concentration"].attrs.update({
107
+ # "units": "g/m^3",
108
+ # "long_name": "Volcanic ash concentration"
109
+ # })
110
+ # ds["altitude"].attrs["units"] = "kilometers above sea level"
111
+ # ds["latitude"].attrs["units"] = "degrees_north"
112
+ # ds["longitude"].attrs["units"] = "degrees_east"
113
+
114
+ # out_path = os.path.join(self.output_dir, output_filename)
115
+ # ds.to_netcdf(out_path)
116
+ # return out_path
117
+
118
+ # def batch_process_zip(self, zip_path: str) -> List[str]:
119
+ # extract_dir = os.path.join(self.output_dir, "unzipped")
120
+ # os.makedirs(extract_dir, exist_ok=True)
121
+
122
+ # with zipfile.ZipFile(zip_path, 'r') as zip_ref:
123
+ # zip_ref.extractall(extract_dir)
124
+
125
+ # txt_files = []
126
+ # for root, _, files in os.walk(extract_dir):
127
+ # for file in files:
128
+ # if file.endswith(".txt"):
129
+ # txt_files.append(os.path.join(root, file))
130
+
131
+ # pattern = re.compile(r"_T(\d+)_.*_Z(\d+)\.txt$")
132
+ # grouped = {}
133
+ # for f in txt_files:
134
+ # match = pattern.search(f)
135
+ # if match:
136
+ # t = int(match.group(1))
137
+ # z = int(match.group(2))
138
+ # grouped.setdefault(t, []).append((z, f))
139
+
140
+ # nc_files = []
141
+ # for t_key in sorted(grouped):
142
+ # group = sorted(grouped[t_key])
143
+ # out_nc = self.convert_3d_group(group, f"T{t_key}.nc")
144
+ # nc_files.append(out_nc)
145
+ # return nc_files
146
+
147
+ # Re-defining the integrated class first
148
+ import os
149
+ import re
150
+ import zipfile
151
+ import numpy as np
152
+ import xarray as xr
153
+ from typing import List, Tuple
154
+ import shutil
155
+
156
+
157
+ class NAMEDataProcessor:
158
+ def __init__(self, output_root: str):
159
+ self.output_root = output_root
160
+ self.output_3d = os.path.join(self.output_root, "3D")
161
+ self.output_horizontal = os.path.join(self.output_root, "horizontal")
162
+ os.makedirs(self.output_3d, exist_ok=True)
163
+ os.makedirs(self.output_horizontal, exist_ok=True)
164
+
165
+ def _sanitize_key(self, key: str) -> str:
166
+ key = re.sub(r'\W+', '_', key)
167
+ if not key[0].isalpha():
168
+ key = f"attr_{key}"
169
+ return key
170
+
171
+ def _parse_metadata(self, lines: List[str]) -> dict:
172
+ metadata = {}
173
+ for line in lines:
174
+ if ":" in line:
175
+ key, value = line.split(":", 1)
176
+ clean_key = self._sanitize_key(key.strip().lower())
177
+ metadata[clean_key] = value.strip()
178
+
179
+ try:
180
+ metadata.update({
181
+ "x_origin": float(metadata["x_grid_origin"]),
182
+ "y_origin": float(metadata["y_grid_origin"]),
183
+ "x_size": int(metadata["x_grid_size"]),
184
+ "y_size": int(metadata["y_grid_size"]),
185
+ "x_res": float(metadata["x_grid_resolution"]),
186
+ "y_res": float(metadata["y_grid_resolution"]),
187
+ })
188
+ except KeyError as e:
189
+ raise ValueError(f"Missing required metadata field: {e}")
190
+ except ValueError as e:
191
+ raise ValueError(f"Invalid value in metadata: {e}")
192
+
193
+ if metadata["x_res"] == 0 or metadata["y_res"] == 0:
194
+ raise ZeroDivisionError("Grid resolution cannot be zero.")
195
+
196
+ return metadata
197
+
198
+ def _get_data_lines(self, lines: List[str]) -> List[str]:
199
+ idx = next(i for i, l in enumerate(lines) if l.strip() == "Fields:")
200
+ return lines[idx + 1:]
201
+
202
+ def _is_horizontal_file(self, filename: str) -> bool:
203
+ return "HorizontalField" in filename
204
+
205
+ def _convert_horizontal(self, filepath: str, output_filename: str) -> str:
206
+ with open(filepath, 'r') as f:
207
+ lines = f.readlines()
208
+
209
+ meta = self._parse_metadata(lines)
210
+ data_lines = self._get_data_lines(lines)
211
+
212
+ lons = np.round(np.arange(meta["x_origin"], meta["x_origin"] + meta["x_size"] * meta["x_res"], meta["x_res"]), 6)
213
+ lats = np.round(np.arange(meta["y_origin"], meta["y_origin"] + meta["y_size"] * meta["y_res"], meta["y_res"]), 6)
214
+
215
+ air_conc = np.zeros((meta["y_size"], meta["x_size"]), dtype=np.float32)
216
+ dry_depo = np.zeros((meta["y_size"], meta["x_size"]), dtype=np.float32)
217
+ wet_depo = np.zeros((meta["y_size"], meta["x_size"]), dtype=np.float32)
218
+
219
+ for line in data_lines:
220
+ parts = [p.strip().strip(',') for p in line.strip().split(',') if p.strip()]
221
+ if len(parts) >= 7 and parts[0].isdigit() and parts[1].isdigit():
222
+ try:
223
+ x = int(parts[0]) - 1
224
+ y = int(parts[1]) - 1
225
+ air_val = float(parts[4])
226
+ dry_val = float(parts[5])
227
+ wet_val = float(parts[6])
228
+ if 0 <= x < meta["x_size"] and 0 <= y < meta["y_size"]:
229
+ air_conc[y, x] = air_val
230
+ dry_depo[y, x] = dry_val
231
+ wet_depo[y, x] = wet_val
232
+ except Exception:
233
+ continue
234
+
235
+ ds = xr.Dataset(
236
+ {
237
+ "air_concentration": (['latitude', 'longitude'], air_conc),
238
+ "dry_deposition_rate": (['latitude', 'longitude'], dry_depo),
239
+ "wet_deposition_rate": (['latitude', 'longitude'], wet_depo)
240
+ },
241
+ coords={
242
+ "latitude": lats,
243
+ "longitude": lons
244
+ },
245
+ attrs={
246
+ "title": "Volcanic Ash Horizontal Output (Multiple Fields)",
247
+ "source": "NAME model output processed to NetCDF (horizontal multi-field)",
248
+ **{k: str(v) for k, v in meta.items()}
249
+ }
250
+ )
251
+
252
+ ds["air_concentration"].attrs.update({
253
+ "units": "g/m^3",
254
+ "long_name": "Boundary Layer Average Air Concentration"
255
+ })
256
+ ds["dry_deposition_rate"].attrs.update({
257
+ "units": "g/m^2/s",
258
+ "long_name": "Dry Deposition Rate"
259
+ })
260
+ ds["wet_deposition_rate"].attrs.update({
261
+ "units": "g/m^2/s",
262
+ "long_name": "Wet Deposition Rate"
263
+ })
264
+ ds["latitude"].attrs["units"] = "degrees_north"
265
+ ds["longitude"].attrs["units"] = "degrees_east"
266
+
267
+ out_path = os.path.join(self.output_horizontal, output_filename)
268
+ ds.to_netcdf(out_path, engine="netcdf4")
269
+
270
+ return out_path
271
+
272
+
273
+ def _convert_3d_group(self, group: List[Tuple[int, str]], output_filename: str) -> str:
274
+ first_file_path = group[0][1]
275
+ with open(first_file_path, 'r') as f:
276
+ lines = f.readlines()
277
+ meta = self._parse_metadata(lines)
278
+
279
+ lons = np.round(np.arange(meta["x_origin"], meta["x_origin"] + meta["x_size"] * meta["x_res"], meta["x_res"]), 6)
280
+ lats = np.round(np.arange(meta["y_origin"], meta["y_origin"] + meta["y_size"] * meta["y_res"], meta["y_res"]), 6)
281
+
282
+ z_levels = []
283
+ z_coords = []
284
+
285
+ for z_idx, filepath in group:
286
+ with open(filepath, 'r') as f:
287
+ lines = f.readlines()
288
+ data_lines = self._get_data_lines(lines)
289
+ grid = np.zeros((meta["y_size"], meta["x_size"]), dtype=np.float32)
290
+
291
+ for line in data_lines:
292
+ parts = [p.strip().strip(',') for p in line.strip().split(',') if p.strip()]
293
+ if len(parts) >= 5 and parts[0].isdigit() and parts[1].isdigit():
294
+ try:
295
+ x = int(parts[0]) - 1
296
+ y = int(parts[1]) - 1
297
+ val = float(parts[4])
298
+ if 0 <= x < meta["x_size"] and 0 <= y < meta["y_size"]:
299
+ grid[y, x] = val
300
+ except Exception:
301
+ continue
302
+ z_levels.append(grid)
303
+ z_coords.append(z_idx)
304
+
305
+ z_cube = np.stack(z_levels, axis=0)
306
+ ds = xr.Dataset(
307
+ {
308
+ "ash_concentration": (['altitude', 'latitude', 'longitude'], z_cube)
309
+ },
310
+ coords={
311
+ "altitude": np.array(z_coords, dtype=np.float32),
312
+ "latitude": lats,
313
+ "longitude": lons
314
+ },
315
+ attrs={
316
+ "title": "Volcanic Ash Concentration (3D)",
317
+ "source": "NAME model output processed to NetCDF (3D fields)",
318
+ **{k: str(v) for k, v in meta.items()}
319
+ }
320
+ )
321
+
322
+ out_path = os.path.join(self.output_3d, output_filename)
323
+
324
+ # 🔥 Check if file exists, delete it first
325
+ # if os.path.exists(out_path):
326
+ # os.remove(out_path)
327
+
328
+ # 🔥 Save NetCDF safely using netCDF4
329
+ ds.to_netcdf(out_path, engine="netcdf4")
330
+
331
+ return out_path
332
+
333
+
334
+ def batch_process_zip(self, zip_path: str) -> List[str]:
335
+ extract_dir = os.path.abspath("unzipped")
336
+
337
+ os.makedirs(extract_dir, exist_ok=True)
338
+
339
+ ###
340
+
341
+
342
+ # Function to empty folder contents
343
+ def empty_folder(folder_path):
344
+ import os
345
+ import glob
346
+ files = glob.glob(os.path.join(folder_path, '*'))
347
+ for f in files:
348
+ try:
349
+ os.remove(f)
350
+ except IsADirectoryError:
351
+ shutil.rmtree(f)
352
+
353
+ # 🛠 Clear cached open files and garbage collect before deleting
354
+
355
+ # 🔥 Empty previous outputs, do not delete folders
356
+ if os.path.exists(self.output_3d):
357
+ empty_folder(self.output_3d)
358
+ else:
359
+ os.makedirs(self.output_3d, exist_ok=True)
360
+
361
+ # if os.path.exists(self.output_horizontal):
362
+ # empty_folder(self.output_horizontal)
363
+ # else:
364
+ # os.makedirs(self.output_horizontal, exist_ok=True)
365
+
366
+ # if os.path.exists(extract_dir):
367
+ # shutil.rmtree(extract_dir)
368
+ # os.makedirs(extract_dir, exist_ok=True)
369
+
370
+
371
+
372
+
373
+
374
+ #####
375
+
376
+ with zipfile.ZipFile(zip_path, 'r') as zip_ref:
377
+ zip_ref.extractall(extract_dir)
378
+
379
+ txt_files = []
380
+ for root, _, files in os.walk(extract_dir):
381
+ for file in files:
382
+ if file.endswith(".txt"):
383
+ txt_files.append(os.path.join(root, file))
384
+
385
+ horizontal_files = []
386
+ grouped_3d = {}
387
+
388
+ pattern = re.compile(r"_T(\d+)_.*_Z(\d+)\.txt$")
389
+
390
+ for f in txt_files:
391
+ if self._is_horizontal_file(f):
392
+ horizontal_files.append(f)
393
+ else:
394
+ match = pattern.search(f)
395
+ if match:
396
+ t = int(match.group(1))
397
+ z = int(match.group(2))
398
+ grouped_3d.setdefault(t, []).append((z, f))
399
+
400
+ nc_files = []
401
+
402
+ # Process horizontal
403
+ for f in sorted(horizontal_files):
404
+ base_name = os.path.splitext(os.path.basename(f))[0]
405
+ out_nc = self._convert_horizontal(f, f"{base_name}.nc")
406
+ nc_files.append(out_nc)
407
+
408
+ # Process 3D
409
+ for t_key in sorted(grouped_3d):
410
+ group = sorted(grouped_3d[t_key])
411
+ out_nc = self._convert_3d_group(group, f"T{t_key}.nc")
412
+ nc_files.append(out_nc)
413
+
414
+ return nc_files
ash_animator/export.py ADDED
@@ -0,0 +1,119 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+
2
+ import os
3
+ import numpy as np
4
+ import matplotlib.pyplot as plt
5
+ import matplotlib.ticker as mticker
6
+ import cartopy.crs as ccrs
7
+ import cartopy.feature as cfeature
8
+ from .interpolation import interpolate_grid
9
+ from .basemaps import draw_etopo_basemap
10
+
11
+ def export_frames_as_jpgs(animator, output_folder: str, include_metadata: bool = True):
12
+ os.makedirs(output_folder, exist_ok=True)
13
+
14
+ meta = animator.datasets[0].attrs
15
+ legend_text = (
16
+ f"Run name: {meta.get('run_name', 'N/A')}\n"
17
+ f"Run time: {meta.get('run_time', 'N/A')}\n"
18
+ f"Met data: {meta.get('met_data', 'N/A')}\n"
19
+ f"Start of release: {meta.get('start_of_release', 'N/A')}\n"
20
+ f"End of release: {meta.get('end_of_release', 'N/A')}\n"
21
+ f"Source strength: {meta.get('source_strength', 'N/A')} g / s\n"
22
+ f"Release location: {meta.get('release_location', 'N/A')}\n"
23
+ f"Release height: {meta.get('release_height', 'N/A')} m asl\n"
24
+ f"Run duration: {meta.get('run_duration', 'N/A')}"
25
+ )
26
+
27
+ for z_index, z_val in enumerate(animator.levels):
28
+ z_dir = os.path.join(output_folder, f"ash_T1-Tn_Z{z_index+1}")
29
+ os.makedirs(z_dir, exist_ok=True)
30
+
31
+ valid_mask = np.stack([
32
+ ds['ash_concentration'].values[z_index] for ds in animator.datasets
33
+ ]).max(axis=0) > 0
34
+ y_idx, x_idx = np.where(valid_mask)
35
+
36
+ if y_idx.size == 0 or x_idx.size == 0:
37
+ print(f"Z level {z_val} km has no valid data. Skipping...")
38
+ continue
39
+
40
+ y_min, y_max = y_idx.min(), y_idx.max()
41
+ x_min, x_max = x_idx.min(), x_idx.max()
42
+
43
+ for t in range(len(animator.datasets)):
44
+ data = animator.datasets[t]['ash_concentration'].values[z_index]
45
+ interp = interpolate_grid(data, animator.lon_grid, animator.lat_grid)
46
+ if np.isfinite(interp).sum() == 0:
47
+ continue
48
+
49
+ fig, (ax1, ax2) = plt.subplots(1, 2, figsize=(18, 8), subplot_kw={'projection': ccrs.PlateCarree()})
50
+ valid_vals = interp[np.isfinite(interp)]
51
+ min_val = np.nanmin(valid_vals)
52
+ max_val = np.nanmax(valid_vals)
53
+ log_cutoff = 1e-3
54
+ log_ratio = max_val / (min_val + 1e-6)
55
+ use_log = min_val > log_cutoff and log_ratio > 100
56
+
57
+ levels = np.logspace(np.log10(log_cutoff), np.log10(max_val), 20) if use_log else np.linspace(0, max_val, 20)
58
+ data_for_plot = np.where(interp > log_cutoff, interp, np.nan) if use_log else interp
59
+ scale_label = "Hybrid Log" if use_log else "Linear"
60
+
61
+ # Plot full
62
+ c1 = ax1.contourf(animator.lons, animator.lats, data_for_plot, levels=levels,
63
+ cmap="rainbow", alpha=0.6, transform=ccrs.PlateCarree())
64
+ draw_etopo_basemap(ax1, mode='stock')
65
+ ax1.set_extent([animator.lons.min(), animator.lons.max(), animator.lats.min(), animator.lats.max()])
66
+ ax1.set_title(f"T{t+1} | Alt: {z_val} km (Full - {scale_label})")
67
+ ax1.coastlines(); ax1.add_feature(cfeature.BORDERS)
68
+ ax1.add_feature(cfeature.LAND); ax1.add_feature(cfeature.OCEAN)
69
+
70
+ # Zoom region
71
+ buffer_y = int((y_max - y_min) * 0.5)
72
+ buffer_x = int((x_max - x_min) * 0.5)
73
+
74
+ y_start = max(0, y_min - buffer_y)
75
+ y_end = min(data_for_plot.shape[0], y_max + buffer_y + 1)
76
+ x_start = max(0, x_min - buffer_x)
77
+ x_end = min(data_for_plot.shape[1], x_max + buffer_x + 1)
78
+
79
+ zoom = data_for_plot[y_start:y_end, x_start:x_end]
80
+ lon_zoom = animator.lons[x_start:x_end]
81
+ lat_zoom = animator.lats[y_start:y_end]
82
+
83
+ c2 = ax2.contourf(lon_zoom, lat_zoom, zoom, levels=levels,
84
+ cmap="rainbow", alpha=0.6, transform=ccrs.PlateCarree())
85
+ draw_etopo_basemap(ax2, mode='stock')
86
+ ax2.set_extent([lon_zoom.min(), lon_zoom.max(), lat_zoom.min(), lat_zoom.max()])
87
+ ax2.set_title(f"T{t+1} | Alt: {z_val} km (Zoom - {scale_label})")
88
+ ax2.coastlines(); ax2.add_feature(cfeature.BORDERS)
89
+ ax2.add_feature(cfeature.LAND); ax2.add_feature(cfeature.OCEAN)
90
+
91
+ for ax in [ax1, ax2]:
92
+ ax.text(0.01, 0.98, f"Time step T{t+1}", transform=ax.transAxes,
93
+ fontsize=9, color='white', va='top', ha='left',
94
+ bbox=dict(facecolor='black', alpha=0.4, boxstyle='round'))
95
+
96
+ if include_metadata:
97
+ for ax in [ax1, ax2]:
98
+ ax.text(0.01, 0.01,
99
+ f"Source: NAME model\nRes: {animator.x_res:.2f}°\n{meta.get('run_name', 'N/A')}",
100
+ transform=ax.transAxes, fontsize=8, color='white',
101
+ bbox=dict(facecolor='black', alpha=0.5))
102
+ ax1.annotate(legend_text, xy=(0.75, 0.99), xycoords='axes fraction',
103
+ fontsize=8, ha='left', va='top',
104
+ bbox=dict(boxstyle="round", facecolor="white", edgecolor="gray"),
105
+ annotation_clip=False)
106
+
107
+ cbar = fig.colorbar(c1, ax=[ax1, ax2], orientation='vertical', shrink=0.75, pad=0.03)
108
+ cbar.set_label("Ash concentration (g/m³)")
109
+ formatter = mticker.FuncFormatter(lambda x, _: f'{x:.2g}')
110
+ cbar.ax.yaxis.set_major_formatter(formatter)
111
+
112
+ if use_log:
113
+ cbar.ax.text(1.1, 1.02, "log scale", transform=cbar.ax.transAxes,
114
+ fontsize=9, color='gray', rotation=90, ha='left', va='bottom')
115
+
116
+ frame_path = os.path.join(z_dir, f"frame_{t+1:04d}.jpg")
117
+ plt.savefig(frame_path, dpi=150, bbox_inches='tight')
118
+ plt.close(fig)
119
+ print(f"Saved {frame_path}")
ash_animator/interpolation.py ADDED
@@ -0,0 +1,14 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+
2
+ import numpy as np
3
+ from scipy.interpolate import griddata
4
+
5
+ def interpolate_grid(data, lon_grid, lat_grid):
6
+ data = np.where(data < 0, np.nan, data)
7
+ mask = data > 0
8
+ if np.count_nonzero(mask) < 10:
9
+ return np.full_like(data, np.nan)
10
+
11
+ points = np.column_stack((lon_grid[mask], lat_grid[mask]))
12
+ values = data[mask]
13
+ grid_z = griddata(points, values, (lon_grid, lat_grid), method='cubic')
14
+ return np.where(grid_z < 0, 0, grid_z)
ash_animator/plot_3dfield_data.py ADDED
@@ -0,0 +1,465 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ import os
2
+ import numpy as np
3
+ import matplotlib.pyplot as plt
4
+ import matplotlib.animation as animation
5
+ import matplotlib.ticker as mticker
6
+ import cartopy.crs as ccrs
7
+ import cartopy.feature as cfeature
8
+ import cartopy.io.shapereader as shpreader
9
+ from adjustText import adjust_text
10
+ from .interpolation import interpolate_grid
11
+ from .basemaps import draw_etopo_basemap
12
+ import imageio.v2 as imageio
13
+ import shutil
14
+
15
+ class Plot_3DField_Data:
16
+
17
+ """
18
+ A class for visualizing 3D spatiotemporal field data (e.g., ash concentration) across time and altitude levels.
19
+
20
+ This class uses matplotlib and cartopy to create:
21
+ - Animated GIFs of spatial fields at given altitudes
22
+ - Vertical profile animations over time
23
+ - Exported static frames with metadata annotations and zoomed views
24
+
25
+ Parameters
26
+ ----------
27
+ animator : object
28
+ A container holding the dataset, including:
29
+ - datasets: list of xarray-like DataArrays with 'ash_concentration'
30
+ - lons, lats: 1D longitude and latitude arrays
31
+ - lat_grid, lon_grid: 2D grid arrays for spatial mapping
32
+ - levels: 1D array of vertical altitude levels (e.g., in km)
33
+ output_dir : str
34
+ Base directory for saving all outputs. Defaults to "plots".
35
+ cmap : str
36
+ Matplotlib colormap name. Defaults to "rainbow".
37
+ fps : int
38
+ Frames per second for GIFs. Defaults to 2.
39
+ include_metadata : bool
40
+ Whether to annotate each figure with simulation metadata. Defaults to True.
41
+ threshold : float
42
+ Value threshold (e.g., in g/m³) to highlight exceedances. Defaults to 0.1.
43
+ zoom_width_deg : float
44
+ Width of the zoomed-in region in degrees. Defaults to 6.0.
45
+ zoom_height_deg : float
46
+ Height of the zoomed-in region in degrees. Defaults to 6.0.
47
+ zoom_level : int
48
+ Zoom level passed to basemap drawing. Defaults to 7.
49
+ basemap_type : str
50
+ Type of basemap to draw (passed to draw_etopo_basemap). Defaults to "basemap".
51
+
52
+ Methods
53
+ -------
54
+ plot_single_z_level(z_km, filename)
55
+ Generate animation over time at a specific altitude level.
56
+
57
+ plot_vertical_profile_at_time(t_index, filename=None)
58
+ Generate vertical profile GIF for a single timestep.
59
+
60
+ animate_altitude(t_index, output_path)
61
+ Animate altitude slices for one timestep.
62
+
63
+ animate_all_altitude_profiles(output_folder='altitude_profiles')
64
+ Generate vertical animations for all time steps.
65
+
66
+ export_frames_as_jpgs(include_metadata=True)
67
+ Export individual frames as static `.jpg` images with annotations.
68
+ """
69
+ def __init__(self, animator, output_dir="plots", cmap="rainbow", fps=2,
70
+ include_metadata=True, threshold=0.1,
71
+ zoom_width_deg=6.0, zoom_height_deg=6.0, zoom_level=7, basemap_type="basemap"):
72
+ self.animator = animator
73
+ self.output_dir = os.path.abspath(os.path.join(os.getcwd(), output_dir))
74
+ os.makedirs(self.output_dir, exist_ok=True)
75
+ self.cmap = cmap
76
+ self.fps = fps
77
+ self.include_metadata = include_metadata
78
+ self.threshold = threshold
79
+ self.zoom_width = zoom_width_deg
80
+ self.zoom_height = zoom_height_deg
81
+ shp = shpreader.natural_earth(resolution='110m', category='cultural', name='admin_0_countries')
82
+ self.country_geoms = list(shpreader.Reader(shp).records())
83
+ self.zoom_level=zoom_level
84
+ self.basemap_type=basemap_type
85
+
86
+ #############3
87
+
88
+
89
+ # Load shapefile once
90
+ countries_shp = shpreader.natural_earth(
91
+ resolution='110m',
92
+ category='cultural',
93
+ name='admin_0_countries'
94
+ )
95
+ self.country_geoms = list(shpreader.Reader(countries_shp).records())
96
+
97
+ # Cache extent bounds
98
+ self.lon_min = np.min(self.animator.lons)
99
+ self.lon_max = np.max(self.animator.lons)
100
+ self.lat_min = np.min(self.animator.lats)
101
+ self.lat_max = np.max(self.animator.lats)
102
+
103
+ #####################3
104
+
105
+ def _make_dirs(self, path):
106
+ path = os.path.abspath(os.path.join(os.getcwd(), os.path.dirname(path)))
107
+ os.makedirs(path, exist_ok=True)
108
+
109
+ def _get_zoom_indices(self, center_lat, center_lon):
110
+ lon_min = center_lon - self.zoom_width / 2
111
+ lon_max = center_lon + self.zoom_width / 2
112
+ lat_min = center_lat - self.zoom_height / 2
113
+ lat_max = center_lat + self.zoom_height / 2
114
+ lat_idx = np.where((self.animator.lats >= lat_min) & (self.animator.lats <= lat_max))[0]
115
+ lon_idx = np.where((self.animator.lons >= lon_min) & (self.animator.lons <= lon_max))[0]
116
+ return lat_idx, lon_idx, lon_min, lon_max, lat_min, lat_max
117
+
118
+ def _get_max_concentration_location(self):
119
+ max_conc = -np.inf
120
+ center_lat = center_lon = None
121
+ for ds in self.animator.datasets:
122
+ for z in range(len(self.animator.levels)):
123
+ data = ds['ash_concentration'].values[z]
124
+ if np.max(data) > max_conc:
125
+ max_conc = np.max(data)
126
+ max_idx = np.unravel_index(np.argmax(data), data.shape)
127
+ center_lat = self.animator.lat_grid[max_idx]
128
+ center_lon = self.animator.lon_grid[max_idx]
129
+ return center_lat, center_lon
130
+
131
+ def _add_country_labels(self, ax, extent):
132
+ proj = ccrs.PlateCarree()
133
+ texts = []
134
+ for country in self.country_geoms:
135
+ name = country.attributes['NAME_LONG']
136
+ geom = country.geometry
137
+ try:
138
+ lon, lat = geom.centroid.x, geom.centroid.y
139
+ if extent[0] <= lon <= extent[1] and extent[2] <= lat <= extent[3]:
140
+ text = ax.text(lon, lat, name, fontsize=6, transform=proj,
141
+ ha='center', va='center', color='white',
142
+ bbox=dict(facecolor='black', alpha=0.5, linewidth=0))
143
+ texts.append(text)
144
+ except:
145
+ continue
146
+ adjust_text(texts, ax=ax, only_move={'points': 'y', 'text': 'y'},
147
+ arrowprops=dict(arrowstyle="->", color='white', lw=0.5))
148
+
149
+ def _plot_frame(self, ax, data, lons, lats, title, levels, scale_label, proj):
150
+ draw_etopo_basemap(ax, mode=self.basemap_type, zoom=self.zoom_level)
151
+ c = ax.contourf(lons, lats, data, levels=levels, cmap=self.cmap, alpha=0.6, transform=proj)
152
+ ax.contour(lons, lats, data, levels=levels, colors='black', linewidths=0.5, transform=proj)
153
+ ax.set_title(title)
154
+ ax.set_extent([lons.min(), lons.max(), lats.min(), lats.max()])
155
+ ax.coastlines()
156
+ ax.add_feature(cfeature.BORDERS, linestyle=':')
157
+ ax.add_feature(cfeature.LAND)
158
+ ax.add_feature(cfeature.OCEAN)
159
+ return c
160
+
161
+
162
+
163
+ # metadata placement function and usage
164
+
165
+ def _draw_metadata_sidebar(self, fig, meta_dict):
166
+ lines = [
167
+ f"Run name: {meta_dict.get('run_name', 'N/A')}",
168
+ f"Run time: {meta_dict.get('run_time', 'N/A')}",
169
+ f"Met data: {meta_dict.get('met_data', 'N/A')}",
170
+ f"Start release: {meta_dict.get('start_of_release', 'N/A')}",
171
+ f"End release: {meta_dict.get('end_of_release', 'N/A')}",
172
+ f"Source strength: {meta_dict.get('source_strength', 'N/A')} g/s",
173
+ f"Release loc: {meta_dict.get('release_location', 'N/A')}",
174
+ f"Release height: {meta_dict.get('release_height', 'N/A')} m asl",
175
+ f"Run duration: {meta_dict.get('run_duration', 'N/A')}"
176
+ ]
177
+ full_text = "\n".join(lines) # ✅ actual newlines
178
+ fig.text(0.1, 0.095, full_text, va='center', ha='left',
179
+ fontsize=9, family='monospace', color='black',
180
+ bbox=dict(facecolor='white', alpha=0.8, edgecolor='gray'))
181
+
182
+
183
+
184
+ def plot_single_z_level(self, z_km, filename="z_level.gif"):
185
+
186
+ if z_km not in self.animator.levels:
187
+ print(f"Z level {z_km} km not found.")
188
+ return
189
+ z_index = np.where(self.animator.levels == z_km)[0][0]
190
+ output_path = os.path.join(self.output_dir, "z_levels", filename)
191
+ fig = plt.figure(figsize=(16, 8))
192
+ proj = ccrs.PlateCarree()
193
+ ax1 = fig.add_subplot(1, 2, 1, projection=proj)
194
+ ax2 = fig.add_subplot(1, 2, 2, projection=proj)
195
+
196
+ center_lat, center_lon = self._get_max_concentration_location()
197
+ lat_idx, lon_idx, lon_min, lon_max, lat_min, lat_max = self._get_zoom_indices(center_lat, center_lon)
198
+ lat_zoom = self.animator.lats[lat_idx]
199
+ lon_zoom = self.animator.lons[lon_idx]
200
+ lon_zoom_grid, lat_zoom_grid = np.meshgrid(lon_zoom, lat_zoom)
201
+
202
+
203
+
204
+ meta = self.animator.datasets[0].attrs
205
+ valid_frames = []
206
+ for t in range(len(self.animator.datasets)):
207
+ interp = interpolate_grid(self.animator.datasets[t]['ash_concentration'].values[z_index],
208
+ self.animator.lon_grid, self.animator.lat_grid)
209
+ if np.isfinite(interp).sum() > 0:
210
+ valid_frames.append(t)
211
+ if not valid_frames:
212
+ print(f"No valid frames for Z={z_km} km.")
213
+ plt.close()
214
+ return
215
+
216
+ def update(t):
217
+ ax1.clear()
218
+ ax2.clear()
219
+
220
+ data = self.animator.datasets[t]['ash_concentration'].values[z_index]
221
+ interp = interpolate_grid(data, self.animator.lon_grid, self.animator.lat_grid)
222
+ interp = np.where(interp < 0, np.nan, interp)
223
+ zoom_plot = interp[np.ix_(lat_idx, lon_idx)]
224
+
225
+ valid_vals = interp[np.isfinite(interp)]
226
+ if valid_vals.size == 0:
227
+ return []
228
+
229
+ min_val, max_val = np.nanmin(valid_vals), np.nanmax(valid_vals)
230
+ log_cutoff = 1e-3
231
+ use_log = min_val > log_cutoff and (max_val / (min_val + 1e-6)) > 100
232
+
233
+ levels = (
234
+ np.logspace(np.log10(log_cutoff), np.log10(max_val), 20)
235
+ if use_log else
236
+ np.linspace(0, max_val, 20)
237
+ )
238
+ data_for_plot = np.where(interp > log_cutoff, interp, np.nan) if use_log else interp
239
+ scale_label = "Log" if use_log else "Linear"
240
+
241
+ c = self._plot_frame(ax1, data_for_plot, self.animator.lons, self.animator.lats,
242
+ f"T{t+1} | Alt: {z_km} km (Full - {scale_label})", levels, scale_label, proj)
243
+ self._plot_frame(ax2, zoom_plot, lon_zoom, lat_zoom,
244
+ f"T{t} | Alt: {z_km} km (Zoom - {scale_label})", levels, scale_label, proj)
245
+
246
+ self._add_country_labels(ax1, [self.animator.lons.min(), self.animator.lons.max(),
247
+ self.animator.lats.min(), self.animator.lats.max()])
248
+ self._add_country_labels(ax2, [lon_min, lon_max, lat_min, lat_max])
249
+
250
+ if not hasattr(update, "colorbar"):
251
+ update.colorbar = fig.colorbar(c, ax=[ax1, ax2], orientation='vertical',
252
+ label="Ash concentration (g/m³)")
253
+ formatter = mticker.FuncFormatter(lambda x, _: f'{x:.2g}')
254
+ update.colorbar.ax.yaxis.set_major_formatter(formatter)
255
+
256
+ # ✅ Draw threshold outline and label only if exceeded
257
+ if np.nanmax(valid_vals) > self.threshold:
258
+ ax1.contour(self.animator.lons, self.animator.lats, interp, levels=[self.threshold],
259
+ colors='red', linewidths=2, transform=proj)
260
+ ax2.contour(lon_zoom, lat_zoom, zoom_plot, levels=[self.threshold],
261
+ colors='red', linewidths=2, transform=proj)
262
+ ax2.text(0.99, 0.01, f"⚠ Max Thresold Exceed: {np.nanmax(valid_vals):.2f} > {self.threshold} g/m³",
263
+ transform=ax2.transAxes, ha='right', va='bottom',
264
+ fontsize=9, color='red',
265
+ bbox=dict(facecolor='white', alpha=0.8, edgecolor='red'))
266
+
267
+ return []
268
+
269
+
270
+
271
+
272
+ self._draw_metadata_sidebar(fig, meta)
273
+ self._make_dirs(output_path)
274
+ fig.tight_layout()
275
+ ani = animation.FuncAnimation(fig, update, frames=valid_frames, blit=False, cache_frame_data =False)
276
+ ani.save(output_path, writer='pillow', fps=self.fps, dpi=300)
277
+ plt.close()
278
+ print(f"✅ Saved Z-level animation to {output_path}")
279
+
280
+ def plot_vertical_profile_at_time(self, t_index, filename=None):
281
+ time_label = f"T{t_index+1}"
282
+ for z_index, z_val in enumerate(self.animator.levels):
283
+ filename = f"TimeSlices_Z{z_val:.1f}km.gif"
284
+ self.plot_single_z_level(z_val, filename=os.path.join("vertical_profiles_timeSlice", filename))
285
+
286
+
287
+ ################################################
288
+
289
+
290
+
291
+ def animate_altitude(self, t_index: int, output_path: str):
292
+ if not (0 <= t_index < len(self.animator.datasets)):
293
+ print(f"Invalid time index {t_index}. Must be between 0 and {len(self.animator.datasets) - 1}.")
294
+
295
+
296
+ ds = self.animator.datasets[t_index]
297
+ fig = plt.figure(figsize=(18, 7))
298
+ proj = ccrs.PlateCarree()
299
+ ax1 = fig.add_subplot(1, 2, 1, projection=proj)
300
+ ax2 = fig.add_subplot(1, 2, 2, projection=proj)
301
+
302
+ meta = ds.attrs
303
+ center_lat, center_lon = self._get_max_concentration_location()
304
+ if center_lat is None or center_lon is None:
305
+ print(f"No valid data found for time T{t_index + 1}. Skipping...")
306
+ plt.close()
307
+ return
308
+
309
+ lat_idx, lon_idx, lon_min, lon_max, lat_min, lat_max = self._get_zoom_indices(center_lat, center_lon)
310
+ lat_zoom = self.animator.lats[lat_idx]
311
+ lon_zoom = self.animator.lons[lon_idx]
312
+ lon_zoom_grid, lat_zoom_grid = np.meshgrid(lon_zoom, lat_zoom)
313
+
314
+ z_indices_with_data = []
315
+ for z_index in range(len(self.animator.levels)):
316
+ data = ds['ash_concentration'].values[z_index]
317
+ interp = interpolate_grid(data, self.animator.lon_grid, self.animator.lat_grid)
318
+ if np.isfinite(interp).sum() > 0:
319
+ z_indices_with_data.append(z_index)
320
+
321
+ if not z_indices_with_data:
322
+ print(f"No valid Z-levels at time T{t_index + 1}.")
323
+ plt.close()
324
+ return
325
+
326
+ def update(z_index):
327
+ ax1.clear()
328
+ ax2.clear()
329
+
330
+ data = ds['ash_concentration'].values[z_index]
331
+ interp = interpolate_grid(data, self.animator.lon_grid, self.animator.lat_grid)
332
+ interp = np.where(interp < 0, np.nan, interp)
333
+ zoom_plot = interp[np.ix_(lat_idx, lon_idx)]
334
+
335
+ valid_vals = interp[np.isfinite(interp)]
336
+ if valid_vals.size == 0:
337
+ return []
338
+
339
+ min_val, max_val = np.nanmin(valid_vals), np.nanmax(valid_vals)
340
+ log_cutoff = 1e-3
341
+ use_log = min_val > log_cutoff and (max_val / (min_val + 1e-6)) > 100
342
+
343
+ levels = np.logspace(np.log10(log_cutoff), np.log10(max_val), 20) if use_log else np.linspace(0, max_val, 20)
344
+ data_for_plot = np.where(interp > log_cutoff, interp, np.nan) if use_log else interp
345
+ scale_label = "Log" if use_log else "Linear"
346
+
347
+ title1 = f"T{t_index + 1} | Alt: {self.animator.levels[z_index]} km (Full - {scale_label})"
348
+ title2 = f"T{t_index + 1} | Alt: {self.animator.levels[z_index]} km (Zoom - {scale_label})"
349
+
350
+ c1 = self._plot_frame(ax1, data_for_plot, self.animator.lons, self.animator.lats, title1, levels, scale_label, proj)
351
+ self._plot_frame(ax2, zoom_plot, lon_zoom, lat_zoom, title2, levels, scale_label, proj)
352
+
353
+ self._add_country_labels(ax1, [self.lon_min, self.lon_max, self.lat_min, self.lat_max])
354
+ self._add_country_labels(ax2, [lon_min, lon_max, lat_min, lat_max])
355
+
356
+ if self.include_metadata:
357
+ self._draw_metadata_sidebar(fig, meta)
358
+
359
+ if not hasattr(update, "colorbar"):
360
+ update.colorbar = fig.colorbar(c1, ax=[ax1, ax2], orientation='vertical',
361
+ label="Ash concentration (g/m³)", shrink=0.75)
362
+ formatter = mticker.FuncFormatter(lambda x, _: f'{x:.2g}')
363
+ update.colorbar.ax.yaxis.set_major_formatter(formatter)
364
+
365
+ if np.nanmax(valid_vals) > self.threshold:
366
+ ax1.contour(self.animator.lons, self.animator.lats, interp, levels=[self.threshold],
367
+ colors='red', linewidths=2, transform=proj)
368
+ ax2.contour(lon_zoom, lat_zoom, zoom_plot, levels=[self.threshold],
369
+ colors='red', linewidths=2, transform=proj)
370
+
371
+
372
+ ax2.text(0.99, 0.01, f"⚠ Max Thresold Exceed: {np.nanmax(valid_vals):.2f} > {self.threshold} g/m³",
373
+ transform=ax2.transAxes, ha='right', va='bottom',
374
+ fontsize=9, color='red',
375
+ bbox=dict(facecolor='white', alpha=0.8, edgecolor='red'))
376
+ return []
377
+
378
+ os.makedirs(os.path.dirname(output_path), exist_ok=True)
379
+ #fig.set_size_inches(18, 7)
380
+ fig.tight_layout(rect=[0.02, 0.02, 0.98, 0.98])
381
+ ani = animation.FuncAnimation(fig, update, frames=z_indices_with_data, blit=False, cache_frame_data =False)
382
+ ani.save(output_path, writer='pillow', fps=self.fps, dpi=300)
383
+ plt.close()
384
+ print(f"✅ Saved vertical profile animation for T{t_index + 1} to {output_path}")
385
+
386
+
387
+
388
+ def animate_all_altitude_profiles(self, output_folder='altitude_profiles'):
389
+ output_folder = os.path.join(self.output_dir, "altitude_profiles")
390
+ os.makedirs(output_folder, exist_ok=True)
391
+ for t_index in range(len(self.animator.datasets)):
392
+ output_path = os.path.join(output_folder, f"vertical_T{t_index + 1:02d}.gif")
393
+ print(f"🔄 Generating vertical profile animation for T{t_index + 1}...")
394
+ self.animate_altitude(t_index, output_path)
395
+
396
+
397
+
398
+
399
+
400
+
401
+ def export_frames_as_jpgs(self, include_metadata: bool = True):
402
+ output_folder = os.path.join(self.output_dir, "frames")
403
+ os.makedirs(output_folder, exist_ok=True)
404
+ meta = self.animator.datasets[0].attrs
405
+ legend_text = "\\n".join([
406
+ f"Run name: {meta.get('run_name', 'N/A')}",
407
+ f"Run time: {meta.get('run_time', 'N/A')}",
408
+ f"Met data: {meta.get('met_data', 'N/A')}",
409
+ f"Start release: {meta.get('start_of_release', 'N/A')}",
410
+ f"End release: {meta.get('end_of_release', 'N/A')}",
411
+ f"Strength: {meta.get('source_strength', 'N/A')} g/s",
412
+ f"Location: {meta.get('release_location', 'N/A')}",
413
+ f"Height: {meta.get('release_height', 'N/A')} m asl",
414
+ f"Duration: {meta.get('run_duration', 'N/A')}"
415
+ ])
416
+ for z_index, z_val in enumerate(self.animator.levels):
417
+ z_dir = os.path.join(output_folder, f"Z{z_val:.1f}km")
418
+ os.makedirs(z_dir, exist_ok=True)
419
+ for t in range(len(self.animator.datasets)):
420
+ data = self.animator.datasets[t]['ash_concentration'].values[z_index]
421
+ interp = interpolate_grid(data, self.animator.lon_grid, self.animator.lat_grid)
422
+ if not np.isfinite(interp).any():
423
+ continue
424
+ fig = plt.figure(figsize=(16, 8))
425
+ proj = ccrs.PlateCarree()
426
+ ax1 = fig.add_subplot(1, 2, 1, projection=proj)
427
+ ax2 = fig.add_subplot(1, 2, 2, projection=proj)
428
+ valid_vals = interp[np.isfinite(interp)]
429
+ min_val, max_val = np.nanmin(valid_vals), np.nanmax(valid_vals)
430
+ log_cutoff = 1e-3
431
+ use_log = min_val > log_cutoff and (max_val / (min_val + 1e-6)) > 100
432
+ levels = np.logspace(np.log10(log_cutoff), np.log10(max_val), 20) if use_log else np.linspace(0, max_val, 20)
433
+ data_for_plot = np.where(interp > log_cutoff, interp, np.nan) if use_log else interp
434
+ scale_label = "Log" if use_log else "Linear"
435
+ center_lat, center_lon = self._get_max_concentration_location()
436
+ lat_idx, lon_idx, lon_min, lon_max, lat_min, lat_max = self._get_zoom_indices(center_lat, center_lon)
437
+ zoom_plot = interp[np.ix_(lat_idx, lon_idx)]
438
+ lon_zoom = self.animator.lons[lon_idx]
439
+ lat_zoom = self.animator.lats[lat_idx]
440
+ c1 = self._plot_frame(ax1, data_for_plot, self.animator.lons, self.animator.lats,
441
+ f"T{t+1} | Alt: {z_val} km (Full - {scale_label})", levels, scale_label, proj)
442
+ self._plot_frame(ax2, zoom_plot, lon_zoom, lat_zoom,
443
+ f"T{t+1} | Alt: {z_val} km (Zoom - {scale_label})", levels, scale_label, proj)
444
+ self._add_country_labels(ax1, [self.animator.lons.min(), self.animator.lons.max(),
445
+ self.animator.lats.min(), self.animator.lats.max()])
446
+ self._add_country_labels(ax2, [lon_min, lon_max, lat_min, lat_max])
447
+ if np.nanmax(valid_vals) > self.threshold:
448
+ ax1.contour(self.animator.lons, self.animator.lats, interp, levels=[self.threshold],
449
+ colors='red', linewidths=2, transform=proj)
450
+ ax2.contour(lon_zoom, lat_zoom, zoom_plot, levels=[self.threshold],
451
+ colors='red', linewidths=2, transform=proj)
452
+ ax2.text(0.99, 0.01, f"⚠ Max: {np.nanmax(valid_vals):.2f} > {self.threshold} g/m³",
453
+ transform=ax2.transAxes, ha='right', va='bottom',
454
+ fontsize=9, color='red',
455
+ bbox=dict(facecolor='white', alpha=0.8, edgecolor='red'))
456
+ if include_metadata:
457
+ self._draw_metadata_sidebar(fig, meta)
458
+ cbar = fig.colorbar(c1, ax=[ax1, ax2], orientation='vertical', shrink=0.75, pad=0.03)
459
+ cbar.set_label("Ash concentration (g/m³)")
460
+ formatter = mticker.FuncFormatter(lambda x, _: f'{x:.2g}')
461
+ cbar.ax.yaxis.set_major_formatter(formatter)
462
+ frame_path = os.path.join(z_dir, f"frame_{t+1:04d}.jpg")
463
+ plt.savefig(frame_path, dpi=150, bbox_inches='tight')
464
+ plt.close(fig)
465
+ print(f"📸 Saved {frame_path}")
ash_animator/plot_horizontal_data.py ADDED
@@ -0,0 +1,564 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ ''' import os
2
+ import numpy as np
3
+ import matplotlib.pyplot as plt
4
+ import matplotlib.animation as animation
5
+ import matplotlib.ticker as mticker
6
+ import cartopy.crs as ccrs
7
+ import cartopy.feature as cfeature
8
+ import cartopy.io.shapereader as shpreader
9
+ from adjustText import adjust_text
10
+ from ash_animator.interpolation import interpolate_grid
11
+ from ash_animator.basemaps import draw_etopo_basemap
12
+
13
+ class Plot_Horizontal_Data:
14
+ def __init__(self, animator, output_dir="plots", cmap="rainbow", fps=2,
15
+ include_metadata=True, threshold=0.1,
16
+ zoom_width_deg=6.0, zoom_height_deg=6.0, zoom_level=7, static_frame_export=False):
17
+ self.animator = animator
18
+ self.output_dir = os.path.abspath(os.path.join(os.getcwd(), output_dir))
19
+ os.makedirs(self.output_dir, exist_ok=True)
20
+ self.cmap = cmap
21
+ self.fps = fps
22
+ self.include_metadata = include_metadata
23
+ self.threshold = threshold
24
+ self.zoom_width = zoom_width_deg
25
+ self.zoom_height = zoom_height_deg
26
+ shp = shpreader.natural_earth(resolution='110m', category='cultural', name='admin_0_countries')
27
+ self.country_geoms = list(shpreader.Reader(shp).records())
28
+ self.interpolate_grid= interpolate_grid
29
+ self._draw_etopo_basemap=draw_etopo_basemap
30
+ self.zoom_level=zoom_level
31
+ self.static_frame_export=static_frame_export
32
+
33
+ def _make_dirs(self, path):
34
+ os.makedirs(os.path.abspath(os.path.join(os.getcwd(), os.path.dirname(path))), exist_ok=True)
35
+
36
+ def _get_max_concentration_location(self, field):
37
+ max_val = -np.inf
38
+ lat = lon = None
39
+ for ds in self.animator.datasets:
40
+ data = ds[field].values
41
+ if np.max(data) > max_val:
42
+ max_val = np.max(data)
43
+ idx = np.unravel_index(np.argmax(data), data.shape)
44
+ lat = self.animator.lat_grid[idx]
45
+ lon = self.animator.lon_grid[idx]
46
+ return lat, lon
47
+
48
+ def _get_zoom_indices(self, center_lat, center_lon):
49
+ lon_min = center_lon - self.zoom_width / 2
50
+ lon_max = center_lon + self.zoom_width / 2
51
+ lat_min = center_lat - self.zoom_height / 2
52
+ lat_max = center_lat + self.zoom_height / 2
53
+ lat_idx = np.where((self.animator.lats >= lat_min) & (self.animator.lats <= lat_max))[0]
54
+ lon_idx = np.where((self.animator.lons >= lon_min) & (self.animator.lons <= lon_max))[0]
55
+ return lat_idx, lon_idx, lon_min, lon_max, lat_min, lat_max
56
+
57
+ def _add_country_labels(self, ax, extent):
58
+ proj = ccrs.PlateCarree()
59
+ texts = []
60
+ for country in self.country_geoms:
61
+ name = country.attributes['NAME_LONG']
62
+ geom = country.geometry
63
+ try:
64
+ lon, lat = geom.centroid.x, geom.centroid.y
65
+ if extent[0] <= lon <= extent[1] and extent[2] <= lat <= extent[3]:
66
+ text = ax.text(lon, lat, name, fontsize=6, transform=proj,
67
+ ha='center', va='center', color='white',
68
+ bbox=dict(facecolor='black', alpha=0.5, linewidth=0))
69
+ texts.append(text)
70
+ except:
71
+ continue
72
+ adjust_text(texts, ax=ax, only_move={'points': 'y', 'text': 'y'},
73
+ arrowprops=dict(arrowstyle="->", color='white', lw=0.5))
74
+
75
+ def _draw_metadata_sidebar(self, fig, meta_dict):
76
+ lines = [
77
+ f"Run name: {meta_dict.get('run_name', 'N/A')}",
78
+ f"Run time: {meta_dict.get('run_time', 'N/A')}",
79
+ f"Met data: {meta_dict.get('met_data', 'N/A')}",
80
+ f"Start release: {meta_dict.get('start_of_release', 'N/A')}",
81
+ f"End release: {meta_dict.get('end_of_release', 'N/A')}",
82
+ f"Source strength: {meta_dict.get('source_strength', 'N/A')} g/s",
83
+ f"Release loc: {meta_dict.get('release_location', 'N/A')}",
84
+ f"Release height: {meta_dict.get('release_height', 'N/A')} m asl",
85
+ f"Run duration: {meta_dict.get('run_duration', 'N/A')}"
86
+ ]
87
+
88
+ # Split into two columns
89
+ mid = len(lines) // 2 + len(lines) % 2
90
+ left_lines = lines[:mid]
91
+ right_lines = lines[mid:]
92
+
93
+ left_text = "\n".join(left_lines)
94
+ right_text = "\n".join(right_lines)
95
+
96
+ # right column
97
+ fig.text(0.05, 0.05, left_text, va='bottom', ha='left',
98
+ fontsize=9, family='monospace', color='black',
99
+ bbox=dict(facecolor='white', alpha=0.8, edgecolor='gray'))
100
+
101
+ # left column
102
+ fig.text(0.3, 0.05, right_text, va='bottom', ha='left',
103
+ fontsize=9, family='monospace', color='black',
104
+ bbox=dict(facecolor='white', alpha=0.8, edgecolor='gray'))
105
+
106
+
107
+
108
+
109
+
110
+ def _plot_frame(self, ax, data, lons, lats, title, levels, scale_label, proj):
111
+ self._draw_etopo_basemap(ax, mode='basemap', zoom=self.zoom_level)
112
+ c = ax.contourf(lons, lats, data, levels=levels, cmap=self.cmap, alpha=0.6, transform=proj)
113
+ ax.set_title(title)
114
+ ax.set_extent([lons.min(), lons.max(), lats.min(), lats.max()])
115
+ ax.coastlines()
116
+ ax.add_feature(cfeature.BORDERS, linestyle=':')
117
+ ax.add_feature(cfeature.LAND)
118
+ ax.add_feature(cfeature.OCEAN)
119
+ return c
120
+
121
+ def get_available_2d_fields(self):
122
+ ds = self.animator.datasets[0]
123
+ return [v for v in ds.data_vars if ds[v].ndim == 2]
124
+
125
+ def plot_single_field_over_time(self, field, filename="field.gif"):
126
+ output_path = os.path.join(self.output_dir, "2d_fields", field, filename)
127
+ meta = self.animator.datasets[0].attrs
128
+ center_lat, center_lon = self._get_max_concentration_location(field)
129
+ lat_idx, lon_idx, lon_min, lon_max, lat_min, lat_max = self._get_zoom_indices(center_lat, center_lon)
130
+ lat_zoom = self.animator.lats[lat_idx]
131
+ lon_zoom = self.animator.lons[lon_idx]
132
+
133
+ valid_frames = []
134
+ for t in range(len(self.animator.datasets)):
135
+ data = self.animator.datasets[t][field].values
136
+ interp = self.interpolate_grid(data, self.animator.lon_grid, self.animator.lat_grid)
137
+ if np.isfinite(interp).sum() > 0:
138
+ valid_frames.append(t)
139
+
140
+ if not valid_frames:
141
+ print(f"No valid frames to plot for field '{field}'.")
142
+ return
143
+
144
+ fig = plt.figure(figsize=(16, 8))
145
+ proj = ccrs.PlateCarree()
146
+ ax1 = fig.add_subplot(1, 2, 1, projection=proj)
147
+ ax2 = fig.add_subplot(1, 2, 2, projection=proj)
148
+
149
+ def update(t):
150
+ ax1.clear()
151
+ ax2.clear()
152
+ data = self.animator.datasets[t][field].values
153
+ interp = self.interpolate_grid(data, self.animator.lon_grid, self.animator.lat_grid)
154
+ zoom = interp[np.ix_(lat_idx, lon_idx)]
155
+ valid = interp[np.isfinite(interp)]
156
+ if valid.size == 0:
157
+ return []
158
+
159
+ min_val, max_val = np.nanmin(valid), np.nanmax(valid)
160
+ log_cutoff = 1e-3
161
+ use_log = min_val > log_cutoff and (max_val / (min_val + 1e-6)) > 100
162
+ levels = np.logspace(np.log10(log_cutoff), np.log10(max_val), 20) if use_log else np.linspace(0, max_val, 20)
163
+ plot_data = np.where(interp > log_cutoff, interp, np.nan) if use_log else interp
164
+ scale_label = "Log" if use_log else "Linear"
165
+
166
+ c = self._plot_frame(ax1, plot_data, self.animator.lons, self.animator.lats,
167
+ f"T{t+1} | {field} (Full - {scale_label})", levels, scale_label, proj)
168
+ self._plot_frame(ax2, zoom, lon_zoom, lat_zoom,
169
+ f"T{t+1} | {field} (Zoom - {scale_label})", levels, scale_label, proj)
170
+
171
+ self._add_country_labels(ax1, [self.animator.lons.min(), self.animator.lons.max(),
172
+ self.animator.lats.min(), self.animator.lats.max()])
173
+ self._add_country_labels(ax2, [lon_min, lon_max, lat_min, lat_max])
174
+
175
+ # Inside update() function:
176
+ if not hasattr(update, "colorbar"):
177
+ unit_label = f"{field}:({self.animator.datasets[0][field].attrs.get("units", field)})" #self.animator.datasets[0][field].attrs.get("units", field)
178
+ update.colorbar = fig.colorbar(c, ax=[ax1, ax2], orientation='vertical', label=unit_label)
179
+ formatter = mticker.FuncFormatter(lambda x, _: f'{x:.2g}')
180
+ update.colorbar.ax.yaxis.set_major_formatter(formatter)
181
+
182
+
183
+ if np.nanmax(valid) > self.threshold:
184
+ ax1.contour(self.animator.lons, self.animator.lats, interp, levels=[self.threshold],
185
+ colors='red', linewidths=2, transform=proj)
186
+ ax2.contour(lon_zoom, lat_zoom, zoom, levels=[self.threshold],
187
+ colors='red', linewidths=2, transform=proj)
188
+ ax2.text(0.99, 0.01, f"⚠ Max Thresold Exceed: {np.nanmax(valid):.2f} > {self.threshold}",
189
+ transform=ax2.transAxes, ha='right', va='bottom',
190
+ fontsize=9, color='red',
191
+ bbox=dict(facecolor='white', alpha=0.8, edgecolor='red'))
192
+
193
+ if self.static_frame_export:
194
+ frame_folder = os.path.join(self.output_dir, "frames", field)
195
+ os.makedirs(frame_folder, exist_ok=True)
196
+ frame_path = os.path.join(frame_folder, f"frame_{t+1:04d}.jpg")
197
+ plt.savefig(frame_path, dpi=300, bbox_inches='tight')
198
+ print(f"🖼️ Saved static frame: {frame_path}")
199
+
200
+ return []
201
+
202
+ if self.include_metadata:
203
+ self._draw_metadata_sidebar(fig, meta)
204
+
205
+ self._make_dirs(output_path)
206
+ fig.tight_layout()
207
+ ani = animation.FuncAnimation(fig, update, frames=valid_frames, blit=False, cache_frame_data =False)
208
+ ani.save(output_path, writer='pillow', fps=self.fps)
209
+ plt.close()
210
+ print(f"✅ Saved enhanced 2D animation for {field} to {output_path}")
211
+
212
+ # def export_frames_as_jpgs(self, fields=None, include_metadata=True):
213
+ # all_fields = self.get_available_2d_fields()
214
+ # if fields:
215
+ # fields = [f for f in fields if f in all_fields]
216
+ # else:
217
+ # fields = all_fields
218
+
219
+ # meta = self.animator.datasets[0].attrs
220
+
221
+ # for field in fields:
222
+ # print(f"📤 Exporting frames for field: {field}")
223
+ # output_folder = os.path.join(self.output_dir, "frames", field)
224
+ # os.makedirs(output_folder, exist_ok=True)
225
+
226
+ # center_lat, center_lon = self._get_max_concentration_location(field)
227
+ # lat_idx, lon_idx, lon_min, lon_max, lat_min, lat_max = self._get_zoom_indices(center_lat, center_lon)
228
+ # lat_zoom = self.animator.lats[lat_idx]
229
+ # lon_zoom = self.animator.lons[lon_idx]
230
+
231
+ # for t, ds in enumerate(self.animator.datasets):
232
+ # data = ds[field].values
233
+ # interp = self.interpolate_grid(data, self.animator.lon_grid, self.animator.lat_grid)
234
+ # if not np.isfinite(interp).any():
235
+ # continue
236
+
237
+ # fig = plt.figure(figsize=(16, 8))
238
+ # proj = ccrs.PlateCarree()
239
+ # ax1 = fig.add_subplot(1, 2, 1, projection=proj)
240
+ # ax2 = fig.add_subplot(1, 2, 2, projection=proj)
241
+ # zoom = interp[np.ix_(lat_idx, lon_idx)]
242
+ # valid = interp[np.isfinite(interp)]
243
+ # min_val, max_val = np.nanmin(valid), np.nanmax(valid)
244
+ # log_cutoff = 1e-3
245
+ # use_log = min_val > log_cutoff and (max_val / (min_val + 1e-6)) > 100
246
+ # levels = np.logspace(np.log10(log_cutoff), np.log10(max_val), 20) if use_log else np.linspace(0, max_val, 20)
247
+ # plot_data = np.where(interp > log_cutoff, interp, np.nan) if use_log else interp
248
+ # scale_label = "Log" if use_log else "Linear"
249
+
250
+ # c = self._plot_frame(ax1, plot_data, self.animator.lons, self.animator.lats,
251
+ # f"T{t+1} | {field} (Full - {scale_label})", levels, scale_label, proj)
252
+ # self._plot_frame(ax2, zoom, lon_zoom, lat_zoom,
253
+ # f"T{t+1} | {field} (Zoom - {scale_label})", levels, scale_label, proj)
254
+
255
+ # self._add_country_labels(ax1, [self.animator.lons.min(), self.animator.lons.max(),
256
+ # self.animator.lats.min(), self.animator.lats.max()])
257
+ # self._add_country_labels(ax2, [lon_min, lon_max, lat_min, lat_max])
258
+
259
+ # if include_metadata:
260
+ # self._draw_metadata_sidebar(fig, meta)
261
+
262
+ # cbar = fig.colorbar(c, ax=[ax1, ax2], orientation='vertical', shrink=0.75, pad=0.03)
263
+ # unit_label = f"{field}:({self.animator.datasets[0][field].attrs.get('units', field)})"
264
+ # cbar.set_label(unit_label)
265
+ # formatter = mticker.FuncFormatter(lambda x, _: f'{x:.2g}')
266
+ # cbar.ax.yaxis.set_major_formatter(formatter)
267
+
268
+ # if np.nanmax(valid) > self.threshold:
269
+ # ax1.contour(self.animator.lons, self.animator.lats, interp, levels=[self.threshold],
270
+ # colors='red', linewidths=2, transform=proj)
271
+ # ax2.contour(lon_zoom, lat_zoom, zoom, levels=[self.threshold],
272
+ # colors='red', linewidths=2, transform=proj)
273
+ # ax2.text(0.99, 0.01, f"⚠ Max: {np.nanmax(valid):.2f} > {self.threshold}",
274
+ # transform=ax2.transAxes, ha='right', va='bottom',
275
+ # fontsize=9, color='red',
276
+ # bbox=dict(facecolor='white', alpha=0.8, edgecolor='red'))
277
+
278
+ # frame_path = os.path.join(output_folder, f"frame_{t+1:04d}.jpg")
279
+ # plt.savefig(frame_path, dpi=150, bbox_inches='tight')
280
+ # plt.close(fig)
281
+ # print(f"📸 Saved {frame_path}")
282
+ '''
283
+
284
+ import os
285
+ import numpy as np
286
+ import matplotlib.pyplot as plt
287
+ import matplotlib.animation as animation
288
+ import matplotlib.ticker as mticker
289
+ import cartopy.crs as ccrs
290
+ import cartopy.feature as cfeature
291
+ import cartopy.io.shapereader as shpreader
292
+ from adjustText import adjust_text
293
+ from ash_animator.interpolation import interpolate_grid
294
+ from ash_animator.basemaps import draw_etopo_basemap
295
+
296
+ class Plot_Horizontal_Data:
297
+ def __init__(self, animator, output_dir="plots", cmap="rainbow", fps=2,
298
+ include_metadata=True, threshold=0.1,
299
+ zoom_width_deg=6.0, zoom_height_deg=6.0, zoom_level=7, static_frame_export=False):
300
+ self.animator = animator
301
+ self.output_dir = os.path.abspath(os.path.join(os.getcwd(), output_dir))
302
+ os.makedirs(self.output_dir, exist_ok=True)
303
+ self.cmap = cmap
304
+ self.fps = fps
305
+ self.include_metadata = include_metadata
306
+ self.threshold = threshold
307
+ self.zoom_width = zoom_width_deg
308
+ self.zoom_height = zoom_height_deg
309
+ shp = shpreader.natural_earth(resolution='110m', category='cultural', name='admin_0_countries')
310
+ self.country_geoms = list(shpreader.Reader(shp).records())
311
+ self.interpolate_grid= interpolate_grid
312
+ self._draw_etopo_basemap=draw_etopo_basemap
313
+ self.zoom_level=zoom_level
314
+ self.static_frame_export=static_frame_export
315
+
316
+ def _make_dirs(self, path):
317
+ os.makedirs(os.path.abspath(os.path.join(os.getcwd(), os.path.dirname(path))), exist_ok=True)
318
+
319
+ def _get_max_concentration_location(self, field):
320
+ max_val = -np.inf
321
+ lat = lon = None
322
+ for ds in self.animator.datasets:
323
+ data = ds[field].values
324
+ if np.max(data) > max_val:
325
+ max_val = np.max(data)
326
+ idx = np.unravel_index(np.argmax(data), data.shape)
327
+ lat = self.animator.lat_grid[idx]
328
+ lon = self.animator.lon_grid[idx]
329
+ return lat, lon
330
+
331
+ def _get_zoom_indices(self, center_lat, center_lon):
332
+ lon_min = center_lon - self.zoom_width / 2
333
+ lon_max = center_lon + self.zoom_width / 2
334
+ lat_min = center_lat - self.zoom_height / 2
335
+ lat_max = center_lat + self.zoom_height / 2
336
+ lat_idx = np.where((self.animator.lats >= lat_min) & (self.animator.lats <= lat_max))[0]
337
+ lon_idx = np.where((self.animator.lons >= lon_min) & (self.animator.lons <= lon_max))[0]
338
+ return lat_idx, lon_idx, lon_min, lon_max, lat_min, lat_max
339
+
340
+ def _add_country_labels(self, ax, extent):
341
+ proj = ccrs.PlateCarree()
342
+ texts = []
343
+ for country in self.country_geoms:
344
+ name = country.attributes['NAME_LONG']
345
+ geom = country.geometry
346
+ try:
347
+ lon, lat = geom.centroid.x, geom.centroid.y
348
+ if extent[0] <= lon <= extent[1] and extent[2] <= lat <= extent[3]:
349
+ text = ax.text(lon, lat, name, fontsize=6, transform=proj,
350
+ ha='center', va='center', color='white',
351
+ bbox=dict(facecolor='black', alpha=0.5, linewidth=0))
352
+ texts.append(text)
353
+ except:
354
+ continue
355
+ adjust_text(texts, ax=ax, only_move={'points': 'y', 'text': 'y'},
356
+ arrowprops=dict(arrowstyle="->", color='white', lw=0.5))
357
+
358
+ def _draw_metadata_sidebar(self, fig, meta_dict):
359
+ lines = [
360
+ f"Run name: {meta_dict.get('run_name', 'N/A')}",
361
+ f"Run time: {meta_dict.get('run_time', 'N/A')}",
362
+ f"Met data: {meta_dict.get('met_data', 'N/A')}",
363
+ f"Start release: {meta_dict.get('start_of_release', 'N/A')}",
364
+ f"End release: {meta_dict.get('end_of_release', 'N/A')}",
365
+ f"Source strength: {meta_dict.get('source_strength', 'N/A')} g/s",
366
+ f"Release loc: {meta_dict.get('release_location', 'N/A')}",
367
+ f"Release height: {meta_dict.get('release_height', 'N/A')} m asl",
368
+ f"Run duration: {meta_dict.get('run_duration', 'N/A')}"
369
+ ]
370
+
371
+ # Split into two columns
372
+ mid = len(lines) // 2 + len(lines) % 2
373
+ left_lines = lines[:mid]
374
+ right_lines = lines[mid:]
375
+
376
+ left_text = "\n".join(left_lines)
377
+ right_text = "\n".join(right_lines)
378
+
379
+ # right column
380
+ fig.text(0.05, 0.05, left_text, va='bottom', ha='left',
381
+ fontsize=9, family='monospace', color='black',
382
+ bbox=dict(facecolor='white', alpha=0.8, edgecolor='gray'))
383
+
384
+ # left column
385
+ fig.text(0.3, 0.05, right_text, va='bottom', ha='left',
386
+ fontsize=9, family='monospace', color='black',
387
+ bbox=dict(facecolor='white', alpha=0.8, edgecolor='gray'))
388
+
389
+
390
+
391
+
392
+
393
+ def _plot_frame(self, ax, data, lons, lats, title, levels, scale_label, proj):
394
+ self._draw_etopo_basemap(ax, mode='basemap', zoom=self.zoom_level)
395
+ c = ax.contourf(lons, lats, data, levels=levels, cmap=self.cmap, alpha=0.6, transform=proj)
396
+ ax.set_title(title)
397
+ ax.set_extent([lons.min(), lons.max(), lats.min(), lats.max()])
398
+ ax.coastlines()
399
+ ax.add_feature(cfeature.BORDERS, linestyle=':')
400
+ ax.add_feature(cfeature.LAND)
401
+ ax.add_feature(cfeature.OCEAN)
402
+ return c
403
+
404
+ def get_available_2d_fields(self):
405
+ ds = self.animator.datasets[0]
406
+ return [v for v in ds.data_vars if ds[v].ndim == 2]
407
+
408
+ def plot_single_field_over_time(self, field, filename="field.gif"):
409
+ output_path = os.path.join(self.output_dir, "2d_fields", field, filename)
410
+ meta = self.animator.datasets[0].attrs
411
+ center_lat, center_lon = self._get_max_concentration_location(field)
412
+ lat_idx, lon_idx, lon_min, lon_max, lat_min, lat_max = self._get_zoom_indices(center_lat, center_lon)
413
+ lat_zoom = self.animator.lats[lat_idx]
414
+ lon_zoom = self.animator.lons[lon_idx]
415
+
416
+ valid_frames = []
417
+ for t in range(len(self.animator.datasets)):
418
+ data = self.animator.datasets[t][field].values
419
+ interp = self.interpolate_grid(data, self.animator.lon_grid, self.animator.lat_grid)
420
+ if np.isfinite(interp).sum() > 0:
421
+ valid_frames.append(t)
422
+
423
+ if not valid_frames:
424
+ print(f"No valid frames to plot for field '{field}'.")
425
+ return
426
+
427
+ fig = plt.figure(figsize=(16, 8))
428
+ proj = ccrs.PlateCarree()
429
+ ax1 = fig.add_subplot(1, 2, 1, projection=proj)
430
+ ax2 = fig.add_subplot(1, 2, 2, projection=proj)
431
+
432
+ def update(t):
433
+ ax1.clear()
434
+ ax2.clear()
435
+ data = self.animator.datasets[t][field].values
436
+ interp = self.interpolate_grid(data, self.animator.lon_grid, self.animator.lat_grid)
437
+ zoom = interp[np.ix_(lat_idx, lon_idx)]
438
+ valid = interp[np.isfinite(interp)]
439
+ if valid.size == 0:
440
+ return []
441
+
442
+ min_val, max_val = np.nanmin(valid), np.nanmax(valid)
443
+ log_cutoff = 1e-3
444
+ use_log = min_val > log_cutoff and (max_val / (min_val + 1e-6)) > 100
445
+ levels = np.logspace(np.log10(log_cutoff), np.log10(max_val), 20) if use_log else np.linspace(0, max_val, 20)
446
+ plot_data = np.where(interp > log_cutoff, interp, np.nan) if use_log else interp
447
+ scale_label = "Log" if use_log else "Linear"
448
+
449
+ c = self._plot_frame(ax1, plot_data, self.animator.lons, self.animator.lats,
450
+ f"T{t+1} | {field} (Full - {scale_label})", levels, scale_label, proj)
451
+ self._plot_frame(ax2, zoom, lon_zoom, lat_zoom,
452
+ f"T{t+1} | {field} (Zoom - {scale_label})", levels, scale_label, proj)
453
+
454
+ self._add_country_labels(ax1, [self.animator.lons.min(), self.animator.lons.max(),
455
+ self.animator.lats.min(), self.animator.lats.max()])
456
+ self._add_country_labels(ax2, [lon_min, lon_max, lat_min, lat_max])
457
+
458
+ # Inside update() function:
459
+ if not hasattr(update, "colorbar"):
460
+ unit_label = f"{field}:({self.animator.datasets[0][field].attrs.get('units', field)})" #self.animator.datasets[0][field].attrs.get("units", field)
461
+ update.colorbar = fig.colorbar(c, ax=[ax1, ax2], orientation='vertical', label=unit_label)
462
+ formatter = mticker.FuncFormatter(lambda x, _: f'{x:.2g}')
463
+ update.colorbar.ax.yaxis.set_major_formatter(formatter)
464
+
465
+
466
+ if np.nanmax(valid) > self.threshold:
467
+ ax1.contour(self.animator.lons, self.animator.lats, interp, levels=[self.threshold],
468
+ colors='red', linewidths=2, transform=proj)
469
+ ax2.contour(lon_zoom, lat_zoom, zoom, levels=[self.threshold],
470
+ colors='red', linewidths=2, transform=proj)
471
+ ax2.text(0.99, 0.01, f"⚠ Max Thresold Exceed: {np.nanmax(valid):.2f} > {self.threshold}",
472
+ transform=ax2.transAxes, ha='right', va='bottom',
473
+ fontsize=9, color='red',
474
+ bbox=dict(facecolor='white', alpha=0.8, edgecolor='red'))
475
+
476
+ if self.static_frame_export:
477
+ frame_folder = os.path.join(self.output_dir, "frames", field)
478
+ os.makedirs(frame_folder, exist_ok=True)
479
+ frame_path = os.path.join(frame_folder, f"frame_{t+1:04d}.jpg")
480
+ plt.savefig(frame_path, dpi=300, bbox_inches='tight')
481
+ print(f"🖼️ Saved static frame: {frame_path}")
482
+
483
+ return []
484
+
485
+ if self.include_metadata:
486
+ self._draw_metadata_sidebar(fig, meta)
487
+
488
+ self._make_dirs(output_path)
489
+ fig.tight_layout()
490
+ ani = animation.FuncAnimation(fig, update, frames=valid_frames, blit=False, cache_frame_data =False)
491
+ ani.save(output_path, writer='pillow', fps=self.fps)
492
+ plt.close()
493
+ print(f"✅ Saved enhanced 2D animation for {field} to {output_path}")
494
+
495
+ # def export_frames_as_jpgs(self, fields=None, include_metadata=True):
496
+ # all_fields = self.get_available_2d_fields()
497
+ # if fields:
498
+ # fields = [f for f in fields if f in all_fields]
499
+ # else:
500
+ # fields = all_fields
501
+
502
+ # meta = self.animator.datasets[0].attrs
503
+
504
+ # for field in fields:
505
+ # print(f"📤 Exporting frames for field: {field}")
506
+ # output_folder = os.path.join(self.output_dir, "frames", field)
507
+ # os.makedirs(output_folder, exist_ok=True)
508
+
509
+ # center_lat, center_lon = self._get_max_concentration_location(field)
510
+ # lat_idx, lon_idx, lon_min, lon_max, lat_min, lat_max = self._get_zoom_indices(center_lat, center_lon)
511
+ # lat_zoom = self.animator.lats[lat_idx]
512
+ # lon_zoom = self.animator.lons[lon_idx]
513
+
514
+ # for t, ds in enumerate(self.animator.datasets):
515
+ # data = ds[field].values
516
+ # interp = self.interpolate_grid(data, self.animator.lon_grid, self.animator.lat_grid)
517
+ # if not np.isfinite(interp).any():
518
+ # continue
519
+
520
+ # fig = plt.figure(figsize=(16, 8))
521
+ # proj = ccrs.PlateCarree()
522
+ # ax1 = fig.add_subplot(1, 2, 1, projection=proj)
523
+ # ax2 = fig.add_subplot(1, 2, 2, projection=proj)
524
+ # zoom = interp[np.ix_(lat_idx, lon_idx)]
525
+ # valid = interp[np.isfinite(interp)]
526
+ # min_val, max_val = np.nanmin(valid), np.nanmax(valid)
527
+ # log_cutoff = 1e-3
528
+ # use_log = min_val > log_cutoff and (max_val / (min_val + 1e-6)) > 100
529
+ # levels = np.logspace(np.log10(log_cutoff), np.log10(max_val), 20) if use_log else np.linspace(0, max_val, 20)
530
+ # plot_data = np.where(interp > log_cutoff, interp, np.nan) if use_log else interp
531
+ # scale_label = "Log" if use_log else "Linear"
532
+
533
+ # c = self._plot_frame(ax1, plot_data, self.animator.lons, self.animator.lats,
534
+ # f"T{t+1} | {field} (Full - {scale_label})", levels, scale_label, proj)
535
+ # self._plot_frame(ax2, zoom, lon_zoom, lat_zoom,
536
+ # f"T{t+1} | {field} (Zoom - {scale_label})", levels, scale_label, proj)
537
+
538
+ # self._add_country_labels(ax1, [self.animator.lons.min(), self.animator.lons.max(),
539
+ # self.animator.lats.min(), self.animator.lats.max()])
540
+ # self._add_country_labels(ax2, [lon_min, lon_max, lat_min, lat_max])
541
+
542
+ # if include_metadata:
543
+ # self._draw_metadata_sidebar(fig, meta)
544
+
545
+ # cbar = fig.colorbar(c, ax=[ax1, ax2], orientation='vertical', shrink=0.75, pad=0.03)
546
+ # unit_label = f"{field}:({self.animator.datasets[0][field].attrs.get('units', field)})"
547
+ # cbar.set_label(unit_label)
548
+ # formatter = mticker.FuncFormatter(lambda x, _: f'{x:.2g}')
549
+ # cbar.ax.yaxis.set_major_formatter(formatter)
550
+
551
+ # if np.nanmax(valid) > self.threshold:
552
+ # ax1.contour(self.animator.lons, self.animator.lats, interp, levels=[self.threshold],
553
+ # colors='red', linewidths=2, transform=proj)
554
+ # ax2.contour(lon_zoom, lat_zoom, zoom, levels=[self.threshold],
555
+ # colors='red', linewidths=2, transform=proj)
556
+ # ax2.text(0.99, 0.01, f"⚠ Max: {np.nanmax(valid):.2f} > {self.threshold}",
557
+ # transform=ax2.transAxes, ha='right', va='bottom',
558
+ # fontsize=9, color='red',
559
+ # bbox=dict(facecolor='white', alpha=0.8, edgecolor='red'))
560
+
561
+ # frame_path = os.path.join(output_folder, f"frame_{t+1:04d}.jpg")
562
+ # plt.savefig(frame_path, dpi=150, bbox_inches='tight')
563
+ # plt.close(fig)
564
+ # print(f"📸 Saved {frame_path}")
ash_animator/utils.py ADDED
@@ -0,0 +1,23 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+
2
+ from geopy.geocoders import Nominatim
3
+ import numpy as np
4
+
5
+ def create_grid(attrs):
6
+ x_origin = float(attrs["x_origin"])
7
+ y_origin = float(attrs["y_origin"])
8
+ x_res = float(attrs["x_res"])
9
+ y_res = float(attrs["y_res"])
10
+ x_grid_size = int(attrs["x_grid_size"])
11
+ y_grid_size = int(attrs["y_grid_size"])
12
+
13
+ lons = np.round(np.linspace(x_origin, x_origin + (x_grid_size - 1) * x_res, x_grid_size), 6)
14
+ lats = np.round(np.linspace(y_origin, y_origin + (y_grid_size - 1) * y_res, y_grid_size), 6)
15
+ return lons, lats, np.meshgrid(lons, lats)
16
+
17
+ def get_country_label(lat, lon):
18
+ geolocator = Nominatim(user_agent="ash_animator")
19
+ try:
20
+ location = geolocator.reverse((lat, lon), language='en')
21
+ return location.raw['address'].get('country', 'Unknown')
22
+ except:
23
+ return "Unknown"
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